Hi JohnThanks for the reply,but i am not using SMILE format, instead i am using a textfile with data(.mol or .rxn.. please refer attchment).basically i am using openscience/jchempaint to read and capture the image here code snippet for jchempaintpanel properties Renderer rr= panel.getRenderPanel().getRenderer(); RendererModel rrm = rr.getRenderer2DModel(); rrm.setZoomFactor(1);//setting the zoom factor rrm.setBondDistance(0.1);//setting the length between 2 bonds of the double or triple bonds rrm.setBondWidth(1);//setting the width of the bond rrm.setBondLength(1); rrm.setShowEndCarbons(true);//show end carbons only rrm.setWedgeWidth(0.2);//setting the width of wedge rrm.setMargin(20); rrm.setScale(1); rrm.setArrowHeadWidth(1);//arrow head width
On Friday, 27 January 2017 5:24 PM,
"cdk-user-requ...@lists.sourceforge.net"
<cdk-user-requ...@lists.sourceforge.net> wrote:
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1. Re: Cdk-user post from r6...@ymail.com requires approval
(John Mayfield)
----------------------------------------------------------------------
Message: 1
Date: Fri, 27 Jan 2017 11:54:08 +0000
From: John Mayfield <john.wilkinson...@gmail.com>
Subject: Re: [Cdk-user] Cdk-user post from r6...@ymail.com requires
approval
To: cdkuser <cdk-user@lists.sourceforge.net>, Rajesh C
<r6...@ymail.com>
Message-ID:
<CAFdOP2s13gq05B25iB=skrh4yptk6o2amr20jv0bo-e1x5c...@mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Hi Rajesh,
Not sure why this message didn't come though to my inbox after being
approved.
A subset of text positions are supported, you can put text in a depiction
as:
- molecule title
- reaction title
- reaction conditions
- atom annotations
- bond annotations
Beyond that you will have to roll on your own and either draw on the raster
image with AWT or append elements to the SVG.
For you described use case it looks like you actually don't want text at
all but rather list agents.
[H][H].C>>[H][H]
https://cdkdepict-openchem.rhcloud.com/depict/bow/svg?smi=[H][H].C%3E%3E[H][H]&abbr=on&suppressh=true&showtitle=false&zoom=1.3&annotate=none
[image: Inline images 7]
vs
[H][H].C>CCO>[H][H]
https://cdkdepict-openchem.rhcloud.com/depict/bow/svg?smi=[H][H].C%3ECCO%3E[H][H]&w=210&h=50&abbr=on&suppressh=true&showtitle=false&zoom=2.05&annotate=none
[image: Inline images 6]
If you want to describe reaction conditions set the property
'cdk:ReactionConditions' on the molecule.
[H][H].C>CCO>[H][H] |SgD::cdk:ReactionConditions:RT|
https://cdkdepict-openchem.rhcloud.com/depict/bow/svg?smi=[H][H].C%3ECCO%3E[H][H]%20%7CSgD%3A%3Acdk%26%2358%3BReactionConditions%3ART%7C&w=210&h=50&abbr=on&suppressh=true&showtitle=false&zoom=2.05&annotate=none
[image: Inline images 8]
John
On 25 January 2017 at 20:18, <cdk-user-ow...@lists.sourceforge.net> wrote:
> As list administrator, your authorization is requested for the
> following mailing list posting:
>
> List: Cdk-user@lists.sourceforge.net
> From: r6...@ymail.com
> Subject: Store image with text elements
> Reason: Post by non-member to a members-only list
>
> At your convenience, visit:
>
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> to approve or deny the request.
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> ---------- Forwarded message ----------
> From: Rajesh C <r6...@ymail.com>
> To: "cdk-user@lists.sourceforge.net" <cdk-user@lists.sourceforge.net>
> Cc:
> Date: Wed, 25 Jan 2017 20:15:34 +0000 (UTC)
> Subject: Store image with text elements
> Hi cdk user,
> Can you please help me in storing a structural as an jpeg image(read from
> Mol) with text in it.
>
> Thanks
>
>
>
>
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