Which version did you generate it with? There should be a blank line after
M END?
John
On 24 July 2017 at 11:03, Staffan Arvidsson <staffan.arvids...@gmail.com>
wrote:
> I just bumped the CDK version in our code repo (from 1.5.13) and found
> that some of my tests are now failing. The issue is reading v3000 SDF files
> were properties are not set on the molecules. I attached the file that I've
> used in one of tests. Basic code for showing things are not working:
>
> IteratingSDFReader iter = new IteratingSDFReader(new
> FileInputStream(file), SilentChemObjectBuilder.getInstance());
>
> while(iter.hasNext()){
>
> System.out.println(iter.next().getProperties());
> }
>
> The output is simply an empty map. Or did I miss something here?
>
> Also, I've found that the keys in properties are somehow 'cleaned' by
> switching out space, dots, equal signs to lower case character? Any reason
> behind this?
>
>
> Best,
> Staffan
>
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