Hi, I developed an app using CDK, and in particular it’s InChi Generator. It runs perfectly with IntelliJ, and as a jar on MacOS and on CentOS. I wanted to make it run within a Docker container (openjdk:8-jdk-alpine with additional installation of gcc), the image is created without any problem, but when I run the container, I get the following error just once:
npls-db-filler_1 | 0 [main] INFO net.sf.jnati.deploy.artefact.ConfigManager - Loading global configuration npls-db-filler_1 | 4 [main] DEBUG net.sf.jnati.deploy.artefact.ConfigManager - Loading defaults: jar:file:/app.jar!/BOOT-INF/lib/jnati-deploy-0.3.jar!/META-INF/jnati/jnati.default-properties npls-db-filler_1 | 5 [main] INFO net.sf.jnati.deploy.artefact.ConfigManager - Loading artefact configuration: jniinchi-1.03_1 npls-db-filler_1 | 6 [main] DEBUG net.sf.jnati.deploy.artefact.ConfigManager - Loading instance defaults: jar:file:/app.jar!/BOOT-INF/lib/jnati-deploy-0.3.jar!/META-INF/jnati/jnati.instance.default-properties npls-db-filler_1 | 9 [main] INFO net.sf.jnati.deploy.repository.ClasspathRepository - Searching classpath for: jniinchi-1.03_1-LINUX-AMD64 npls-db-filler_1 | 14 [main] INFO net.sf.jnati.deploy.repository.LocalRepository - Searching local repository for: jniinchi-1.03_1-LINUX-AMD64 npls-db-filler_1 | 16 [main] DEBUG net.sf.jnati.deploy.repository.LocalRepository - Artefact path: /root/.jnati/repo/jniinchi/1.03_1/LINUX-AMD64 npls-db-filler_1 | 16 [main] INFO net.sf.jnati.deploy.repository.LocalRepository - Creating artefact: /root/.jnati/repo/jniinchi/1.03_1/LINUX-AMD64 npls-db-filler_1 | 18 [main] DEBUG net.sf.jnati.deploy.source.JarSource - Opening jar: /app.jar npls-db-filler_1 | 19 [main] WARN net.sf.jnati.deploy.NativeArtefactLocator - Error resolving artefact to local repository npls-db-filler_1 | java.io.FileNotFoundException: File not found: MANIFEST.xml npls-db-filler_1 | at net.sf.jnati.deploy.source.JarSource.openFile(JarSource.java:67) npls-db-filler_1 | at net.sf.jnati.deploy.source.ArtefactSource.loadManifest(ArtefactSource.java:41) And this every time the InChiGenerator is called in my code: Error loading JNI InChI native code. npls-db-filler_1 | You may need to compile the native code for your platform. npls-db-filler_1 | See http://jni-inchi.sourceforge.net for instructions. npls-db-filler_1 | npls-db-filler_1 | 1033 [main] INFO net.sf.jnati.deploy.artefact.ConfigManager - Loading artefact configuration: jniinchi-1.03_1 npls-db-filler_1 | 1037 [main] DEBUG net.sf.jnati.deploy.artefact.ConfigManager - Loading instance defaults: jar:file:/app.jar!/BOOT-INF/lib/jnati-deploy-0.3.jar!/META-INF/jnati/jnati.instance.default-properties npls-db-filler_1 | 1039 [main] INFO net.sf.jnati.deploy.repository.ClasspathRepository - Searching classpath for: jniinchi-1.03_1-LINUX-AMD64 npls-db-filler_1 | 1039 [main] INFO net.sf.jnati.deploy.repository.LocalRepository - Searching local repository for: jniinchi-1.03_1-LINUX-AMD64 npls-db-filler_1 | 1039 [main] DEBUG net.sf.jnati.deploy.repository.LocalRepository - Artefact path: /root/.jnati/repo/jniinchi/1.03_1/LINUX-AMD64 npls-db-filler_1 | 1040 [main] INFO net.sf.jnati.deploy.repository.LocalRepository - Creating artefact: /root/.jnati/repo/jniinchi/1.03_1/LINUX-AMD64 npls-db-filler_1 | 1040 [main] DEBUG net.sf.jnati.deploy.source.JarSource - Opening jar: /app.jar npls-db-filler_1 | 1041 [main] WARN net.sf.jnati.deploy.NativeArtefactLocator - Error resolving artefact to local repository npls-db-filler_1 | java.io.FileNotFoundException: File not found: MANIFEST.xml npls-db-filler_1 | at net.sf.jnati.deploy.source.JarSource.openFile(JarSource.java:67) Have anybody tried and succeed using InChiGenerator within a Docker container? Which package/library/software I should add to either my Docker image, either to my Maven repo to make it work within this container? Thank you for your help! Kind regards, Maria Sorokina, PhD Steinbeck Research Group Analytical Chemistry - Cheminformatics and Chemometrics Friedrich-Schiller-University Jena, Germany http://cheminf.uni-jena.de
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