Hello! I'm trying to realize substructure search. As I understand, the ShortestPathFingerprinter is suitable for this. I ran into the following problem. I attach two file(in molecules.zip). when using butane.mol as query, should find ciclopentane.mol. When i found BitSet for butane i got: {115, 503, 540, 653, 893} {115, 503, 542, 653, 893} - for ciclopentane. So i cannot find ciclopentane. Is there a way to make it work?
-- С уважением, Николаев Артём
butane.MOL
Description: Binary data
ciclopentane.MOL
Description: Binary data
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