Yes they are round tripped by MDL (BondStereo.UP_OR_DOWN) for sure, however could be a JChemPaint issue - and that's no longer actively developed.
Corner-case but are you using a JChemPaint release or built one yourself? If you've mixed in a new version of CDK it may be tripped up with the new Bond "Display" property. https://github.com/cdk/cdk/blob/master/base/interfaces/src/main/java/org/openscience/cdk/interfaces/IBond.java#L137 On Wed, 1 Apr 2020 at 04:31, Shao Frankro <frankro3...@outlook.com> wrote: > Dear all, > I am reading the source code of JChemPaint and writing a molecule > editor based on CDK. I found the wavy bonds become solid bonds when I > save them to a MDL/CML format file and reopen it in JChemPaint. > So I want to know if there's any file format or any way that can save > all the informations of CDK's memory model to a file and I cound reload > it(maybe like serialization and deserialization), If not, what is the > easiest way to achieve this? > > Thanks for your help! > > > PS: I found the CDKSourceCodeWriter may save the informations of CDK's > memory model, but I don't know how to use these codes and it also > lose Stereo information. > _______________________________________________ > Cdk-user mailing list > Cdk-user@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/cdk-user >
_______________________________________________ Cdk-user mailing list Cdk-user@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/cdk-user
