I'm using StructureDiagramGenerator.generateCoordinates() to create a layout before using CDKMolDepict to generate images for molecules, and I've hit a problem when using molecules that already have 3D coordinates as StructureDiagramGenerator.generateCoordinates() does not generate a new 2D layout if 3D coordinates are present, and passing in a molecule with 3D coordinates seems to make CDKMolDepict crash badly.
So, what is the best way to clear the 3D coordinates for a molecule, so that StructureDiagramGenerator.generateCoordinates() can do its job?
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