For background on "holding onto the head of a sequence" type problems, see

https://stuartsierra.com/2015/04/26/clojure-donts-concat

and

https://stackoverflow.com/questions/15994316/clojure-head-retention

On Tue, Aug 8, 2017 at 6:19 PM, Nathan Smutz <nsm...@gmail.com> wrote:
> The one thing I'm aware of holding on to is a filtered file-seq:
> (def the-files (filter #(s/ends-with? (.getName %) ".xml" ) (rest (file-seq
> (io/file dw-path)))))
> There are 7,000+ files; but I'm assuming the elements there are just
> file-references and shouldn't take much space.
>
> The rest of the process is a transducer sequence:
> (def requirement-seq (sequence
>                          (comp
>                            (map xml-zip-from-file)
>                            (remove degree-complete?)
>                            (map student-and-requirements))
>                          the-files))
>
> Those functions are admittedly space inefficient (lots of work with
> zippers); but are pure.  What comes out the other end is a sequence of
> Clojure maps.  Could holding on to the file references prevent all that
> processing effluvia from being collected?
>
> The original files add up to 1.3 gigs altogether.  I'd expect the gleaned
> data to be significantly smaller; but I'd better check into how close that's
> getting to the default heap-size.
>
> Best,
> Nathan
>
> On Tuesday, August 8, 2017 at 1:20:21 AM UTC-7, Peter Hull wrote:
>>
>>
>> On Tuesday, 8 August 2017 06:20:56 UTC+1, Nathan Smutz wrote:
>>>
>>> Does this message sometimes present because the non-garbage data is
>>> getting too big?
>>
>> Yes, it's when most of your heap is non-garbage, so the GC has to keep
>> running but doesn't succeed in freeing much memory each time.
>> See
>> https://docs.oracle.com/javase/8/docs/technotes/guides/troubleshoot/memleaks002.html
>>
>> You can increases the heap but that might only defer the problem.
>>
>> As you process all your files, are you holding on to references to objects
>> that you don't need any more?
>
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