I found the following:
(letfn [(foo [a b] (subvec a (count b)))] (foo [1 2 3 4] [1 2]))

but is it the best one?

Good day,
>
> There is a function FOO that receives two sequences: say, A and B. There 
> is an absolute guarantee that sequence B is received from sequence A by 
> applying next to it N times, e.g. B == (next (next (next... A) | A.
> What is the fastest way to return sequence C from the function FOO that 
> contains all the heading entries in sequence A in the same order, that are 
> not included in B?
>
> Example: A == [1 2 3 4], B == [3 4], (FOO A B) -> [1 2]
>
> I feel it is impossible to introduce a fast O(N) solution when A and B 
> just sequences, and if it is so, what *standard* clojure data structures 
> that preserves the order of elements can be used for doing so?
>
> BR,
> Alex
>

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