Sure, rebuild_cache was the first I tried. The test-errors remain even in the 
master tree of today.
Performing now on a clean build ...
        #ctest -R Qt5Autogen.Moc
Test project /BUILD/BUILDMint18/BuildCmakeGit
Guessing configuration NoConfig
     Start 553: Qt5Autogen.MocOnly
1/8 Test #553: Qt5Autogen.MocOnly ...............   Passed    2.04 sec
     Start 554: Qt5Autogen.MocOptions
2/8 Test #554: Qt5Autogen.MocOptions ............   Passed    1.40 sec
     Start 576: Qt5Autogen.MocCMP0071
3/8 Test #576: Qt5Autogen.MocCMP0071 ............   Passed    2.48 sec
     Start 577: Qt5Autogen.MocIncludeRelaxed
4/8 Test #577: Qt5Autogen.MocIncludeRelaxed .....***Failed    4.37 sec
     Start 578: Qt5Autogen.MocIncludeStrict
5/8 Test #578: Qt5Autogen.MocIncludeStrict ......***Failed    4.24 sec
     Start 579: Qt5Autogen.MocSkipSource
6/8 Test #579: Qt5Autogen.MocSkipSource .........***Failed    2.99 sec
     Start 580: Qt5Autogen.MocMacroName
7/8 Test #580: Qt5Autogen.MocMacroName ..........   Passed    1.95 sec
     Start 581: Qt5Autogen.MocOsMacros
8/8 Test #581: Qt5Autogen.MocOsMacros ...........   Passed    0.56 sec

63% tests passed, 3 tests failed out of 8

Total Test time (real) =  20.09 sec

The following tests FAILED:
        577 - Qt5Autogen.MocIncludeRelaxed (Failed)
        578 - Qt5Autogen.MocIncludeStrict (Failed)
        579 - Qt5Autogen.MocSkipSource (Failed)
Errors while running CTest


Okay, it looks like SKIP_AUTOMOC doesn't work properly.
Can you please post the output of

- `ctest -R Qt5Autogen.MocSkip -VV`
- `cat Tests/Qt5Autogen/MocSkipSource/CMakeFiles/skipMocA_autogen.dir/AutogenInfo.cmake` - `cat Tests/Qt5Autogen/MocSkipSource/CMakeFiles/skipMocB_autogen.dir/AutogenInfo.cmake`
--

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