Where can I put build instructions that are build-host-wide, not project-wide?

I'm relatively new to cmake. I want to "inject" some code before the project's own script, and I'd prefer not to modify the project (since then I'd have to maintain the patch).

I want to set the CMAKE_<target>_PREFIX variables based on the version of Visual Studio used and whether it's a debug or release build. (I've been given code to do this on the VTK list, but I don't see how to use it apart from editing VTK's file.)
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