Hi, I am thankfull for all help. Now, it is working :-)
Radovan, thank you to try to run and your comments. My CMakeList.txt is showed below. I would like to know about best practice to make a CMakeList. If agree, I will compile others executables of my project based on how I compiled this executable. In [1] contains my full project. cmake_minimum_required(VERSION 2.8) # project Information project(2pg_cartesian) set(PROJECT_VERSION "1.0") # Set compiler flags SET ( CMAKE_CXX_FLAGS "-lm -pedantic") #Set CXX compiler for all files below set_source_files_properties(include/LoadConfig.h PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/protpred-Gromacs-NSGA2.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/LoadConfig.cpp PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/ea_mono.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/topology.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/pdbio.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/protein.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/futil.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/pdbatom.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/messages.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/topologyio.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/topologylib.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/randomlib.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/vector_math.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/string_owner.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/math_owner.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/osutil.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/load_parameters.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/objective.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/aminoacids.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/aminoacids_io.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/populationio.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/rotation.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/solution.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/gromacs_objectives.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/solutionio.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/algorithms.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/ea_nsga2.c PROPERTIES LANGUAGE CXX ) set_source_files_properties(src/dominance.c PROPERTIES LANGUAGE CXX ) # set include include_directories(include) # add libries add_library(2PG-NSGA2_lib STATIC src/LoadConfig.cpp src/ea_mono.c src/topology.c src/pdbio.c src/protein.c src/futil.c src/pdbatom.c src/messages.c src/topologyio.c src/topologylib.c src/randomlib.c src/vector_math.c src/string_owner.c src/math_owner.c src/osutil.c src/load_parameters.c src/objective.c src/aminoacids.c src/aminoacids_io.c src/populationio.c src/rotation.c src/solution.c src/gromacs_objectives.c src/solutionio.c src/algorithms.c src/ea_nsga2.c src/dominance.c ) #end of 2PG-NSGA2_lib # add target add_executable(protpred-Gromacs-NSGA2 src/protpred-Gromacs-NSGA2.c) target_link_libraries(protpred-Gromacs-NSGA2 2PG-NSGA2_lib) # install install(TARGETS protpred-Gromacs-NSGA2 DESTINATION bin) [1] https://dl.dropboxusercontent.com/u/4270818/2pg_cartesian_cmake.zip Best regards, -- Rodrigo Antonio Faccioli, Ph.D Development Software for Structural Bioinformatics Barao de Maua University University of Sao Paulo Lindedin - br.linkedin.com/pub/rodrigo-antonio-faccioli/7/589/a5/ Curriculum Lattes - http://lattes.cnpq.br/1025157978990218 On Tue, Aug 5, 2014 at 3:39 PM, radovan bast <b...@kth.se> wrote: > dear Rodrigo, > > i tried it but ran into many other problems in the source, not cmake. > > but also some cmake suggestions: > - list the language(s) that the project uses > - the c99 flag is not a definition but a compiler flag, use > CMAKE_CXX_FLAGS_... for portability > - "ALL" is not a good library name > - i recommend to not glob sources but to list them explicitly, there are > several discussions on the net > which explain why if you search for the topic > > good luck! > radovan > > > On Tue, Aug 5, 2014 at 5:08 PM, Rodrigo Faccioli < > rodrigo.facci...@gmail.com> wrote: > >> Hi, >> >> Thanks Angeliki and Bill for your attentation. >> >> I have updated my CMakeList.txt based on your post. Below my >> CMakeList.txt is showed. >> >> cmake_minimum_required(VERSION 2.8) >> # project Information >> project(2pg_cartesian) >> set(PROJECT_VERSION "1.0") >> # add definitions to compiler >> add_definitions(-std=c99) >> # get all files under directory src >> file(GLOB SRC_FILES "src/*.c") >> # set include >> include_directories(include) >> # added libries >> add_library(ALL STATIC ${SRC_FILES}) >> # add target >> add_executable(protpred-Gromacs-NSGA2 src/protpred-Gromacs-NSGA2.c) >> target_link_libraries(protpred-Gromacs-NSGA2 ALL) >> >> Unfortunatelly, I have received error messages as cited below: >> faccioli@faccioli:~/Downloads/2pg_cartesian/build$ make >> Scanning dependencies of target ALL >> [ 2%] Building C object CMakeFiles/ALL.dir/src/protpred-Gromacs-NSGA2.c.o >> [ 5%] Building C object CMakeFiles/ALL.dir/src/ea_mono.c.o >> [ 7%] Building C object CMakeFiles/ALL.dir/src/topologyio.c.o >> [ 10%] Building C object CMakeFiles/ALL.dir/src/aminoacids.c.o >> [ 12%] Building C object CMakeFiles/ALL.dir/src/populationio.c.o >> [ 15%] Building C object CMakeFiles/ALL.dir/src/osutil.c.o >> [ 17%] Building C object CMakeFiles/ALL.dir/src/aminoacids_io.c.o >> [ 20%] Building C object >> CMakeFiles/ALL.dir/src/protpred-Gromacs-Sort_Method_Files_by_Front_Dominance.c.o >> [ 23%] Building C object CMakeFiles/ALL.dir/src/pdbio.c.o >> [ 25%] Building C object CMakeFiles/ALL.dir/src/solution.c.o >> [ 28%] Building C object CMakeFiles/ALL.dir/src/vector_math.c.o >> [ 30%] Building C object CMakeFiles/ALL.dir/src/math_owner.c.o >> [ 33%] Building C object CMakeFiles/ALL.dir/src/protein.c.o >> [ 35%] Building C object CMakeFiles/ALL.dir/src/load_parameters.c.o >> In file included from >> /home/faccioli/Downloads/2pg_cartesian/src/load_parameters.c:7:0: >> /home/faccioli/Downloads/2pg_cartesian/include/LoadConfig.h:1:18: fatal >> error: string: Arquivo ou diretório não encontrado >> compilation terminated. >> make[2]: ** [CMakeFiles/ALL.dir/src/load_parameters.c.o] Erro 1 >> make[1]: ** [CMakeFiles/ALL.dir/all] Erro 2 >> make: ** [all] Erro 2 >> faccioli@faccioli:~/Downloads/2pg_cartesian/build$ >> >> I did not understand what mistakes I have done since all files share same >> structure of directory. In [1] is my project completly. If prefer I can >> send its github repository. >> >> I appreciate any help. >> >> Best regards, >> >> [1] https://dl.dropboxusercontent.com/u/4270818/2pg_cartesian_cmake.zip >> >> >> -- >> Rodrigo Antonio Faccioli, Ph.D >> Development Software for Structural Bioinformatics >> Barao de Maua University >> University of Sao Paulo >> Lindedin - br.linkedin.com/pub/rodrigo-antonio-faccioli/7/589/a5/ >> Curriculum Lattes - http://lattes.cnpq.br/1025157978990218 >> >> >> On Mon, Aug 4, 2014 at 12:54 PM, Bill Hoffman <bill.hoff...@kitware.com> >> wrote: >> >>> On 8/4/2014 10:26 AM, Rodrigo Faccioli wrote: >>> >>>> protpred-Gromacs-NSGA2.c:(.text+0x1e): undefined reference to >>>> `display_msg' >>>> protpred-Gromacs-NSGA2.c:(.text+0x3e): undefined reference to >>>> `load_parameters_from_file' >>>> protpred-Gromacs-NSGA2.c:(.text+0x58): undefined reference to >>>> `ea_nsga2' >>>> protpred-Gromacs-NSGA2.c:(.text+0x64): undefined reference to >>>> `fatal_error' >>>> protpred-Gromacs-NSGA2.c:(.text+0x73): undefined reference to >>>> `deAllocateload_parameters' >>>> protpred-Gromacs-NSGA2.c:(.text+0x7d): undefined reference to >>>> `display_msg' >>>> >>> You have to find out where these symbols are defined. If you have a >>> working Makefile version use nm and grep to find the places. You can also >>> grep your source tree. You are either missing a source file, or a -D >>> option. >>> >>> Another approach is to run make VERBOSE=1 and compare the build command >>> lines to your Makefile build. >>> >>> -Bill >>> >>> -- >>> >>> Powered by www.kitware.com >>> >>> Please keep messages on-topic and check the CMake FAQ at: >>> http://www.cmake.org/Wiki/CMake_FAQ >>> >>> Kitware offers various services to support the CMake community. For more >>> information on each offering, please visit: >>> >>> CMake Support: http://cmake.org/cmake/help/support.html >>> CMake Consulting: http://cmake.org/cmake/help/consulting.html >>> CMake Training Courses: http://cmake.org/cmake/help/training.html >>> >>> Visit other Kitware open-source projects at http://www.kitware.com/ >>> opensource/opensource.html >>> >>> Follow this link to subscribe/unsubscribe: >>> http://public.kitware.com/mailman/listinfo/cmake >>> >> >> >> -- >> >> Powered by www.kitware.com >> >> Please keep messages on-topic and check the CMake FAQ at: >> http://www.cmake.org/Wiki/CMake_FAQ >> >> Kitware offers various services to support the CMake community. For more >> information on each offering, please visit: >> >> CMake Support: http://cmake.org/cmake/help/support.html >> CMake Consulting: http://cmake.org/cmake/help/consulting.html >> CMake Training Courses: http://cmake.org/cmake/help/training.html >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/cmake >> > > > > -- > # PDC Center for High Performance Computing & > # Department of Theoretical Chemistry and Biology > # Royal Institute of Technology, Stockholm > # +46-8-790-6628 >
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