The error itself I believe is a side effect of CMake trying to operate assuming it's using normal Linux, which makes some assumptions regarding shared runtime libraries for libc, position independent code, etc. The default behaviour of the Cray compiler wrappers, however, is to create fully static executables, which CMake has a bit of difficulty with using the defaault Linux platform. This behaviour of the wrappers can be changed by setting the env var CRAYPE_LINK_TYPE=dynamic, but really the right way is to use the CrayLinuxEnvironment platform file which puts CMake into cross-compiling mode for the Cray-specific link environment instead of generic Linux and tests for static, shared, implicit link and include dirs, implicit libraries, etc.
- Chuck On Fri, Dec 18, 2015 at 11:12 AM, JR Cary <c...@txcorp.com> wrote: > Working on a just delivered Cray I am again challenged by the way that > CMake adds libraries to the end of the link line that I did not specify. > > The Cray requires use of the compiler wrappers. After adding the > appropriate libraries (hdf5, z) to my target, the link line is > > /opt/cray/craype/2.4.2/bin/CC -DMPICH_IGNORE_CXX_SEEK -std=c++11 -O3 > -DNDEBUG -msse2 CMakeFiles/io.dir/io.cxx.o -o io > -L/opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib ../libtxio.a > ../../txstreams/libtxstreams.a > /opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib/libhdf5.a -Wl,-Bstatic -lz > -Wl,-Bdynamic /opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib/libhdf5.a > -Wl,-Bstatic -lz -Wl,-Bdynamic > -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib > > and the link fails with > > ld: dynamic STT_GNU_IFUNC symbol `strcmp' with pointer equality in > `/usr/lib/../lib64/libc.a(strcmp.o)' can not be used when making an > executable; recompile with -fPIE and relink with -pie > > Now I believe that Cray has the appropriate libraries in its compiler > wrapper, because > if I just link without all the additions: > > /opt/cray/craype/2.4.2/bin/CC -DMPICH_IGNORE_CXX_SEEK -std=c++11 -O3 > -DNDEBUG -msse2 CMakeFiles/io.dir/io.cxx.o -o io > -L/opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib ../libtxio.a > ../../txstreams/libtxstreams.a > /opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib/libhdf5.a -lz > > it all just works. > > Is there a way to tell cmake not to append > "-Wl,-Bdynamic /opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib/libhdf5.a > -Wl,-Bstatic -lz -Wl,-Bdynamic > -Wl,-rpath,/opt/cray/hdf5-parallel/1.8.14/INTEL/14.0/lib" > to the link line and not to insert -Wl,-Bstatic in front of -lz > ? > > Thx....John Cary > > -- > > Powered by www.kitware.com > > Please keep messages on-topic and check the CMake FAQ at: > http://www.cmake.org/Wiki/CMake_FAQ > > Kitware offers various services to support the CMake community. For more > information on each offering, please visit: > > CMake Support: http://cmake.org/cmake/help/support.html > CMake Consulting: http://cmake.org/cmake/help/consulting.html > CMake Training Courses: http://cmake.org/cmake/help/training.html > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/cmake >
-- Powered by www.kitware.com Please keep messages on-topic and check the CMake FAQ at: http://www.cmake.org/Wiki/CMake_FAQ Kitware offers various services to support the CMake community. For more information on each offering, please visit: CMake Support: http://cmake.org/cmake/help/support.html CMake Consulting: http://cmake.org/cmake/help/consulting.html CMake Training Courses: http://cmake.org/cmake/help/training.html Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/cmake
