Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-biopython for openSUSE:Factory checked in at 2021-02-21 22:14:31 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/python-biopython (Old) and /work/SRC/openSUSE:Factory/.python-biopython.new.28504 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-biopython" Sun Feb 21 22:14:31 2021 rev:7 rq:874102 version:1.78 Changes: -------- --- /work/SRC/openSUSE:Factory/python-biopython/python-biopython.changes 2020-11-04 18:31:57.384205692 +0100 +++ /work/SRC/openSUSE:Factory/.python-biopython.new.28504/python-biopython.changes 2021-02-21 22:14:38.854120611 +0100 @@ -1,0 +2,22 @@ +Sat Feb 20 19:29:23 UTC 2021 - andy great <andythe_gr...@pm.me> + +- Update to version 1.7.8. + * The main change is that Bio.Alphabet is no longer used. In some + cases you will now have to specify expected letters, molecule + type (DNA, RNA, protein), or gap character explicitly. + * Bio.SeqIO.parse() is faster with "fastq" format due to small + improvements in the Bio.SeqIO.QualityIO module. + * The SeqFeature object's .extract() method can now be used for + trans-spliced locations via an optional dictionary of references. + * As in recent releases, more of our code is now explicitly + available under either our original "Biopython License Agreement", + or the very similar but more commonly used "3-Clause BSD License". + See the LICENSE.rst file for more details. + * Additionally, a number of small bugs and typos have been fixed + with additions to the test suite. There has been further work to + follow the Python PEP8, PEP257 and best practice standard coding + style, and all of the tests have been reformatted with the black + tool to match the main code base. +- Skip python36 because numpy no longer support it. + +------------------------------------------------------------------- Old: ---- biopython-1.77.tar.gz New: ---- biopython-1.78.tar.gz ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ python-biopython.spec ++++++ --- /var/tmp/diff_new_pack.g2NLoP/_old 2021-02-21 22:14:39.418121206 +0100 +++ /var/tmp/diff_new_pack.g2NLoP/_new 2021-02-21 22:14:39.418121206 +0100 @@ -1,7 +1,7 @@ # # spec file for package python-biopython # -# Copyright (c) 2020 SUSE LLC +# Copyright (c) 2021 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -20,8 +20,9 @@ # Tests require a network connection %bcond_with test %define skip_python2 1 +%define skip_python36 1 Name: python-biopython -Version: 1.77 +Version: 1.78 Release: 0 Summary: Python Tools for Computational Molecular Biology License: MIT AND BSD-3-Clause @@ -54,7 +55,6 @@ %prep %setup -q -n biopython-%{version} find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';' -sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' Scripts/Structure/hsexpo # Example scripts cannot be in a subdirectory mv -v Doc/examples examples ++++++ biopython-1.77.tar.gz -> biopython-1.78.tar.gz ++++++ /work/SRC/openSUSE:Factory/python-biopython/biopython-1.77.tar.gz /work/SRC/openSUSE:Factory/.python-biopython.new.28504/biopython-1.78.tar.gz differ: char 5, line 1