Script 'mail_helper' called by obssrc
Hello community,
here is the log from the commit of package python-emcee for openSUSE:Factory
checked in at 2022-05-30 12:43:56
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-emcee (Old)
and /work/SRC/openSUSE:Factory/.python-emcee.new.2254 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-emcee"
Mon May 30 12:43:56 2022 rev:5 rq:979711 version:3.1.2
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-emcee/python-emcee.changes
2021-09-20 23:34:35.183279812 +0200
+++ /work/SRC/openSUSE:Factory/.python-emcee.new.2254/python-emcee.changes
2022-05-30 12:44:50.320461462 +0200
@@ -1,0 +2,7 @@
+Sun May 29 15:29:08 UTC 2022 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Update to version 3.1.2:
+ - Make the sample state indexable [gh#dfm/emcee#425].
+ - Remove NumPy from SETUP_REQUIRES [gh#dfm/emcee#427].
+
+-------------------------------------------------------------------
Old:
----
emcee-3.1.1.tar.gz
New:
----
emcee-3.1.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-emcee.spec ++++++
--- /var/tmp/diff_new_pack.0EgquM/_old 2022-05-30 12:44:50.888462218 +0200
+++ /var/tmp/diff_new_pack.0EgquM/_new 2022-05-30 12:44:50.892462224 +0200
@@ -1,7 +1,7 @@
#
# spec file for package python-emcee
#
-# Copyright (c) 2021 SUSE LLC
+# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -20,7 +20,7 @@
# NEP 29: python36-numpy and -scipy are no longer available in TW
%define skip_python36 1
Name: python-emcee
-Version: 3.1.1
+Version: 3.1.2
Release: 0
Summary: Python affine-invariant ensemble MCMC sampling
License: MIT
++++++ emcee-3.1.1.tar.gz -> emcee-3.1.2.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/.github/workflows/tests.yml
new/emcee-3.1.2/.github/workflows/tests.yml
--- old/emcee-3.1.1/.github/workflows/tests.yml 2021-08-23 17:16:30.000000000
+0200
+++ new/emcee-3.1.2/.github/workflows/tests.yml 2022-05-10 17:20:45.000000000
+0200
@@ -16,12 +16,12 @@
runs-on: ${{ matrix.os }}
strategy:
matrix:
- python-version: ["3.7", "3.8", "3.9"]
+ python-version: ["3.7", "3.8", "3.9", "3.10"]
os: ["ubuntu-latest"]
include:
- - python-version: "3.8"
+ - python-version: "3.9"
os: "macos-latest"
- - python-version: "3.8"
+ - python-version: "3.9"
os: "windows-latest"
steps:
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/.gitignore new/emcee-3.1.2/.gitignore
--- old/emcee-3.1.1/.gitignore 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/.gitignore 2022-05-10 17:20:45.000000000 +0200
@@ -22,3 +22,4 @@
.tox
env
.eggs
+.coverage.*
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/.pre-commit-config.yaml
new/emcee-3.1.2/.pre-commit-config.yaml
--- old/emcee-3.1.1/.pre-commit-config.yaml 2021-08-23 17:16:30.000000000
+0200
+++ new/emcee-3.1.2/.pre-commit-config.yaml 2022-05-10 17:20:45.000000000
+0200
@@ -1,14 +1,14 @@
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.0.1
+ rev: v4.2.0
hooks:
- id: trailing-whitespace
- id: end-of-file-fixer
- id: debug-statements
- repo: https://github.com/PyCQA/isort
- rev: "5.9.3"
+ rev: "5.10.1"
hooks:
- id: isort
args: []
@@ -16,11 +16,11 @@
exclude: docs/tutorials
- repo: https://github.com/psf/black
- rev: "21.7b0"
+ rev: "22.3.0"
hooks:
- id: black
- repo: https://github.com/dfm/black_nbconvert
- rev: v0.3.0
+ rev: v0.4.0
hooks:
- id: black_nbconvert
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/HISTORY.rst new/emcee-3.1.2/HISTORY.rst
--- old/emcee-3.1.1/HISTORY.rst 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/HISTORY.rst 2022-05-10 17:20:45.000000000 +0200
@@ -1,5 +1,12 @@
.. :changelog:
+3.1.2 (2022-05-10)
+++++++++++++++++++
+
+- Removed ``numpy`` from ``setup_requires`` `#427
<https://github.com/dfm/emcee/pull/427>`_
+- Made the sampler state indexable `#425
<https://github.com/dfm/emcee/pull/425>`_
+
+
3.1.1 (2021-08-23)
++++++++++++++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/PKG-INFO new/emcee-3.1.2/PKG-INFO
--- old/emcee-3.1.1/PKG-INFO 2021-08-23 17:16:43.005506300 +0200
+++ new/emcee-3.1.2/PKG-INFO 2022-05-10 17:20:57.214236000 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: emcee
-Version: 3.1.1
+Version: 3.1.2
Summary: The Python ensemble sampling toolkit for MCMC
Home-page: https://emcee.readthedocs.io
Author: Daniel Foreman-Mackey
@@ -8,6 +8,7 @@
Maintainer: Daniel Foreman-Mackey
Maintainer-email: foreman.mac...@gmail.com
License: MIT
+Project-URL: Source, https://github.com/dfm/emcee
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/conf.py new/emcee-3.1.2/docs/conf.py
--- old/emcee-3.1.1/docs/conf.py 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/docs/conf.py 2022-05-10 17:20:45.000000000 +0200
@@ -48,5 +48,5 @@
"use_repository_button": True,
"use_download_button": True,
}
-jupyter_execute_notebooks = "off"
-execution_timeout = -1
+nb_execution_mode = "off"
+nb_execution_timeout = -1
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/requirements.txt
new/emcee-3.1.2/docs/requirements.txt
--- old/emcee-3.1.1/docs/requirements.txt 2021-08-23 17:16:30.000000000
+0200
+++ new/emcee-3.1.2/docs/requirements.txt 2022-05-10 17:20:45.000000000
+0200
@@ -1,4 +1,4 @@
-sphinx-book-theme @ git+https://github.com/dfm/sphinx-book-theme.git@fix-outdir
+sphinx-book-theme
myst-nb
matplotlib
scipy
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/tutorials/autocorr.ipynb
new/emcee-3.1.2/docs/tutorials/autocorr.ipynb
--- old/emcee-3.1.1/docs/tutorials/autocorr.ipynb 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/docs/tutorials/autocorr.ipynb 2022-05-10
17:20:45.000000000 +0200
@@ -450,7 +450,7 @@
"\n",
"\n",
"def log_prob(p):\n",
- " return np.logaddexp(-0.5 * np.sum(p ** 2), -0.5 * np.sum((p - 4.0) **
2))\n",
+ " return np.logaddexp(-0.5 * np.sum(p**2), -0.5 * np.sum((p - 4.0) **
2))\n",
"\n",
"\n",
"sampler = emcee.EnsembleSampler(32, 3, log_prob)\n",
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/tutorials/line.ipynb
new/emcee-3.1.2/docs/tutorials/line.ipynb
--- old/emcee-3.1.1/docs/tutorials/line.ipynb 2021-08-23 17:16:30.000000000
+0200
+++ new/emcee-3.1.2/docs/tutorials/line.ipynb 2022-05-10 17:20:45.000000000
+0200
@@ -148,9 +148,9 @@
"source": [
"A = np.vander(x, 2)\n",
"C = np.diag(yerr * yerr)\n",
- "ATA = np.dot(A.T, A / (yerr ** 2)[:, None])\n",
+ "ATA = np.dot(A.T, A / (yerr**2)[:, None])\n",
"cov = np.linalg.inv(ATA)\n",
- "w = np.linalg.solve(ATA, np.dot(A.T, y / yerr ** 2))\n",
+ "w = np.linalg.solve(ATA, np.dot(A.T, y / yerr**2))\n",
"print(\"Least-squares estimates:\")\n",
"print(\"m = {0:.3f} ?? {1:.3f}\".format(w[0], np.sqrt(cov[0, 0])))\n",
"print(\"b = {0:.3f} ?? {1:.3f}\".format(w[1], np.sqrt(cov[1, 1])))\n",
@@ -218,7 +218,7 @@
"def log_likelihood(theta, x, y, yerr):\n",
" m, b, log_f = theta\n",
" model = m * x + b\n",
- " sigma2 = yerr ** 2 + model ** 2 * np.exp(2 * log_f)\n",
+ " sigma2 = yerr**2 + model**2 * np.exp(2 * log_f)\n",
" return -0.5 * np.sum((y - model) ** 2 / sigma2 + np.log(sigma2))"
]
},
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/tutorials/monitor.ipynb
new/emcee-3.1.2/docs/tutorials/monitor.ipynb
--- old/emcee-3.1.1/docs/tutorials/monitor.ipynb 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/docs/tutorials/monitor.ipynb 2022-05-10
17:20:45.000000000 +0200
@@ -58,7 +58,7 @@
"# We'll also use the \"blobs\" feature to track the \"log prior\" for
each step\n",
"def log_prob(theta):\n",
" log_prior = -0.5 * np.sum((theta - 1.0) ** 2 / 100.0)\n",
- " log_prob = -0.5 * np.sum(theta ** 2) + log_prior\n",
+ " log_prob = -0.5 * np.sum(theta**2) + log_prior\n",
" return log_prob, log_prior\n",
"\n",
"\n",
@@ -341,7 +341,7 @@
"# this time, with a subtly different prior\n",
"def log_prob2(theta):\n",
" log_prior = -0.5 * np.sum((theta - 2.0) ** 2 / 100.0)\n",
- " log_prob = -0.5 * np.sum(theta ** 2) + log_prior\n",
+ " log_prob = -0.5 * np.sum(theta**2) + log_prior\n",
" return log_prob, log_prior\n",
"\n",
"\n",
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/tutorials/parallel.ipynb
new/emcee-3.1.2/docs/tutorials/parallel.ipynb
--- old/emcee-3.1.1/docs/tutorials/parallel.ipynb 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/docs/tutorials/parallel.ipynb 2022-05-10
17:20:45.000000000 +0200
@@ -85,7 +85,7 @@
" while True:\n",
" if time.time() >= t:\n",
" break\n",
- " return -0.5 * np.sum(theta ** 2)"
+ " return -0.5 * np.sum(theta**2)"
]
},
{
@@ -348,7 +348,7 @@
" while True:\n",
" if time.time() >= t:\n",
" break\n",
- " return -0.5 * np.sum(theta ** 2)\n",
+ " return -0.5 * np.sum(theta**2)\n",
"\n",
"\n",
"data = np.random.randn(5000, 200)\n",
@@ -459,7 +459,7 @@
" while True:\n",
" if time.time() >= t:\n",
" break\n",
- " return -0.5 * np.sum(theta ** 2)\n",
+ " return -0.5 * np.sum(theta**2)\n",
"\n",
"\n",
"with Pool() as pool:\n",
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/docs/tutorials/quickstart.ipynb
new/emcee-3.1.2/docs/tutorials/quickstart.ipynb
--- old/emcee-3.1.1/docs/tutorials/quickstart.ipynb 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/docs/tutorials/quickstart.ipynb 2022-05-10
17:20:45.000000000 +0200
@@ -101,7 +101,7 @@
"np.random.seed(42)\n",
"means = np.random.rand(ndim)\n",
"\n",
- "cov = 0.5 - np.random.rand(ndim ** 2).reshape((ndim, ndim))\n",
+ "cov = 0.5 - np.random.rand(ndim**2).reshape((ndim, ndim))\n",
"cov = np.triu(cov)\n",
"cov += cov.T - np.diag(cov.diagonal())\n",
"cov = np.dot(cov, cov)"
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/pyproject.toml
new/emcee-3.1.2/pyproject.toml
--- old/emcee-3.1.1/pyproject.toml 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/pyproject.toml 2022-05-10 17:20:45.000000000 +0200
@@ -4,7 +4,6 @@
[tool.black]
line-length = 79
-target-version = ['py35']
exclude = '''
/(
\.eggs
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/setup.py new/emcee-3.1.2/setup.py
--- old/emcee-3.1.1/setup.py 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/setup.py 2022-05-10 17:20:45.000000000 +0200
@@ -23,7 +23,7 @@
"Programming Language :: Python",
]
INSTALL_REQUIRES = ["numpy"]
-SETUP_REQUIRES = INSTALL_REQUIRES + [
+SETUP_REQUIRES = [
"setuptools>=40.6.0",
"setuptools_scm",
"wheel",
@@ -67,6 +67,9 @@
maintainer=find_meta("author"),
maintainer_email=find_meta("email"),
url=find_meta("uri"),
+ project_urls={
+ "Source": "https://github.com/dfm/emcee";,
+ },
license=find_meta("license"),
description=find_meta("description"),
long_description=read("README.rst"),
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/emcee_version.py
new/emcee-3.1.2/src/emcee/emcee_version.py
--- old/emcee-3.1.1/src/emcee/emcee_version.py 2021-08-23 17:16:42.000000000
+0200
+++ new/emcee-3.1.2/src/emcee/emcee_version.py 2022-05-10 17:20:55.000000000
+0200
@@ -1 +1 @@
-__version__ = "3.1.1"
+__version__ = "3.1.2"
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/ensemble.py
new/emcee-3.1.2/src/emcee/ensemble.py
--- old/emcee-3.1.1/src/emcee/ensemble.py 2021-08-23 17:16:30.000000000
+0200
+++ new/emcee-3.1.2/src/emcee/ensemble.py 2022-05-10 17:20:45.000000000
+0200
@@ -642,7 +642,7 @@
if np.any(C_colmax == 0):
return False
C /= C_colmax
- C_colsum = np.sqrt(np.sum(C ** 2, axis=0))
+ C_colsum = np.sqrt(np.sum(C**2, axis=0))
C /= C_colsum
return np.linalg.cond(C.astype(float)) <= 1e8
@@ -655,11 +655,11 @@
def _scaled_cond(a):
- asum = np.sqrt((a ** 2).sum(axis=0))[None, :]
+ asum = np.sqrt((a**2).sum(axis=0))[None, :]
if np.any(asum == 0):
return np.inf
b = a / asum
- bsum = np.sqrt((b ** 2).sum(axis=1))[:, None]
+ bsum = np.sqrt((b**2).sum(axis=1))[:, None]
if np.any(bsum == 0):
return np.inf
c = b / bsum
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/state.py
new/emcee-3.1.2/src/emcee/state.py
--- old/emcee-3.1.1/src/emcee/state.py 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/state.py 2022-05-10 17:20:45.000000000 +0200
@@ -44,6 +44,11 @@
self.blobs = dc(blobs)
self.random_state = dc(random_state)
+ def __len__(self):
+ if self.blobs is None:
+ return 3
+ return 4
+
def __repr__(self):
return "State({0}, log_prob={1}, blobs={2}, random_state={3})".format(
self.coords, self.log_prob, self.blobs, self.random_state
@@ -55,3 +60,16 @@
return iter(
(self.coords, self.log_prob, self.random_state, self.blobs)
)
+
+ def __getitem__(self, index):
+ if index < 0:
+ return self[len(self) + index]
+ if index == 0:
+ return self.coords
+ elif index == 1:
+ return self.log_prob
+ elif index == 2:
+ return self.random_state
+ elif index == 3 and self.blobs is not None:
+ return self.blobs
+ raise IndexError("Invalid index '{0}'".format(index))
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore'
old/emcee-3.1.1/src/emcee/tests/integration/test_longdouble.py
new/emcee-3.1.2/src/emcee/tests/integration/test_longdouble.py
--- old/emcee-3.1.1/src/emcee/tests/integration/test_longdouble.py
2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/integration/test_longdouble.py
2022-05-10 17:20:45.000000000 +0200
@@ -7,7 +7,7 @@
def test_longdouble_doesnt_crash_bug_312():
def log_prob(x, ivar):
- return -0.5 * np.sum(ivar * x ** 2)
+ return -0.5 * np.sum(ivar * x**2)
ndim, nwalkers = 5, 20
ivar = 1.0 / np.random.rand(ndim).astype(np.longdouble)
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore'
old/emcee-3.1.1/src/emcee/tests/integration/test_proposal.py
new/emcee-3.1.2/src/emcee/tests/integration/test_proposal.py
--- old/emcee-3.1.1/src/emcee/tests/integration/test_proposal.py
2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/integration/test_proposal.py
2022-05-10 17:20:45.000000000 +0200
@@ -15,11 +15,11 @@
def normal_log_prob_blobs(params):
- return -0.5 * np.sum(params ** 2), params
+ return -0.5 * np.sum(params**2), params
def normal_log_prob(params):
- return -0.5 * np.sum(params ** 2)
+ return -0.5 * np.sum(params**2)
def uniform_log_prob(params):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/tests/unit/test_backends.py
new/emcee-3.1.2/src/emcee/tests/unit/test_backends.py
--- old/emcee-3.1.1/src/emcee/tests/unit/test_backends.py 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/unit/test_backends.py 2022-05-10
17:20:45.000000000 +0200
@@ -23,7 +23,7 @@
def normal_log_prob(params):
- return -0.5 * np.sum(params ** 2)
+ return -0.5 * np.sum(params**2)
def normal_log_prob_blobs(params):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/tests/unit/test_blobs.py
new/emcee-3.1.2/src/emcee/tests/unit/test_blobs.py
--- old/emcee-3.1.1/src/emcee/tests/unit/test_blobs.py 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/unit/test_blobs.py 2022-05-10
17:20:45.000000000 +0200
@@ -15,7 +15,7 @@
self.blob_function = blob_function
def __call__(self, params):
- return -0.5 * np.sum(params ** 2), self.blob_function(params)
+ return -0.5 * np.sum(params**2), self.blob_function(params)
@pytest.mark.parametrize("backend", backends.get_test_backends())
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/tests/unit/test_sampler.py
new/emcee-3.1.2/src/emcee/tests/unit/test_sampler.py
--- old/emcee-3.1.1/src/emcee/tests/unit/test_sampler.py 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/unit/test_sampler.py 2022-05-10
17:20:45.000000000 +0200
@@ -14,7 +14,7 @@
def normal_log_prob(params):
- return -0.5 * np.sum(params ** 2)
+ return -0.5 * np.sum(params**2)
@pytest.mark.parametrize(
@@ -211,7 +211,7 @@
def test_vectorize():
def lp_vec(p):
- return -0.5 * np.sum(p ** 2, axis=1)
+ return -0.5 * np.sum(p**2, axis=1)
np.random.seed(42)
nwalkers, ndim = 32, 3
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee/tests/unit/test_state.py
new/emcee-3.1.2/src/emcee/tests/unit/test_state.py
--- old/emcee-3.1.1/src/emcee/tests/unit/test_state.py 2021-08-23
17:16:30.000000000 +0200
+++ new/emcee-3.1.2/src/emcee/tests/unit/test_state.py 2022-05-10
17:20:45.000000000 +0200
@@ -1,11 +1,16 @@
# -*- coding: utf-8 -*-
import numpy as np
+import pytest
from emcee import EnsembleSampler
from emcee.state import State
+def check_rstate(a, b):
+ assert all(np.allclose(a_, b_) for a_, b_ in zip(a[1:], b[1:]))
+
+
def test_back_compat(seed=1234):
np.random.seed(seed)
coords = np.random.randn(16, 3)
@@ -18,20 +23,20 @@
assert np.allclose(coords, c)
assert np.allclose(log_prob, l)
assert np.allclose(blobs, b)
- assert all(np.allclose(a, b) for a, b in zip(rstate[1:], r[1:]))
+ check_rstate(rstate, r)
state = State(coords, log_prob, None, rstate)
c, l, r = state
assert np.allclose(coords, c)
assert np.allclose(log_prob, l)
- assert all(np.allclose(a, b) for a, b in zip(rstate[1:], r[1:]))
+ check_rstate(rstate, r)
def test_overwrite(seed=1234):
np.random.seed(seed)
def ll(x):
- return -0.5 * np.sum(x ** 2)
+ return -0.5 * np.sum(x**2)
nwalkers = 64
p0 = np.random.normal(size=(nwalkers, 1))
@@ -40,3 +45,28 @@
sampler = EnsembleSampler(nwalkers, 1, ll)
sampler.run_mcmc(p0, 10)
assert np.allclose(init, p0)
+
+
+def test_indexing(seed=1234):
+ np.random.seed(seed)
+ coords = np.random.randn(16, 3)
+ log_prob = np.random.randn(len(coords))
+ blobs = np.random.randn(len(coords))
+ rstate = np.random.get_state()
+
+ state = State(coords, log_prob, blobs, rstate)
+ np.testing.assert_allclose(state[0], state.coords)
+ np.testing.assert_allclose(state[1], state.log_prob)
+ check_rstate(state[2], state.random_state)
+ np.testing.assert_allclose(state[3], state.blobs)
+ np.testing.assert_allclose(state[-1], state.blobs)
+ with pytest.raises(IndexError):
+ state[4]
+
+ state = State(coords, log_prob, random_state=rstate)
+ np.testing.assert_allclose(state[0], state.coords)
+ np.testing.assert_allclose(state[1], state.log_prob)
+ check_rstate(state[2], state.random_state)
+ check_rstate(state[-1], state.random_state)
+ with pytest.raises(IndexError):
+ state[3]
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/src/emcee.egg-info/PKG-INFO
new/emcee-3.1.2/src/emcee.egg-info/PKG-INFO
--- old/emcee-3.1.1/src/emcee.egg-info/PKG-INFO 2021-08-23 17:16:42.000000000
+0200
+++ new/emcee-3.1.2/src/emcee.egg-info/PKG-INFO 2022-05-10 17:20:56.000000000
+0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: emcee
-Version: 3.1.1
+Version: 3.1.2
Summary: The Python ensemble sampling toolkit for MCMC
Home-page: https://emcee.readthedocs.io
Author: Daniel Foreman-Mackey
@@ -8,6 +8,7 @@
Maintainer: Daniel Foreman-Mackey
Maintainer-email: foreman.mac...@gmail.com
License: MIT
+Project-URL: Source, https://github.com/dfm/emcee
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/emcee-3.1.1/tox.ini new/emcee-3.1.2/tox.ini
--- old/emcee-3.1.1/tox.ini 2021-08-23 17:16:30.000000000 +0200
+++ new/emcee-3.1.2/tox.ini 2022-05-10 17:20:45.000000000 +0200
@@ -1,11 +1,12 @@
[tox]
-envlist = py{37,38,39}{,-extras},lint
+envlist = py{37,38,39,310}{,-extras},lint
[gh-actions]
python =
3.7: py37
3.8: py38
3.9: py39-extras
+ 3.10: py310
[testenv]
deps = coverage[toml]
