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Hello community,
here is the log from the commit of package python-scikit-image for
openSUSE:Factory checked in at 2022-07-05 12:08:50
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-scikit-image (Old)
and /work/SRC/openSUSE:Factory/.python-scikit-image.new.1548 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-scikit-image"
Tue Jul 5 12:08:50 2022 rev:16 rq:986472 version:0.19.3
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-scikit-image/python-scikit-image.changes
2021-02-10 21:30:25.142287232 +0100
+++
/work/SRC/openSUSE:Factory/.python-scikit-image.new.1548/python-scikit-image.changes
2022-07-05 12:08:52.512504593 +0200
@@ -1,0 +2,69 @@
+Fri Jul 1 09:19:38 UTC 2022 - Ben Greiner <c...@bnavigator.de>
+
+- Update to 0.19.3
+ * Revert unintentional change to default multichannel behavior
+ introduced in v0.19.0 for skimage.restoration.cycle_spin (now
+ defaults to single channel again)
+ * Fix corner case with an optimal angle of 0 degrees in
+ hough_line_peaks
+ * Fixed the gallery example involving registration with log-polar
+ transformations
+ * Update test suite for compatibility with the most recent
+ tifffile release.
+ * warp/rotate: fixed a bug with clipping when cval is not in the
+ input range
+ * Fix computation of histogram bins for multichannel
+ integer-valued images
+ * Update skimage.future.manual_polygon_segmentation to work with
+ Matplotlib 3.5.
+ * Update skimage.io.imread to avoid warnings when using
+ imageio>=2.16.2.
+ * Now compatible with Pillow >= 9.1 (palette may contain <256
+ entries)
+ * Added support for NumPy 1.23
+- Release 0.19.2
+ * This is primarily a bug fix release, although there is one new
+ gallery example related to detection of fluorescence at the
+ nuclear envelope of mammalian cells.
+- Release 0.19.1
+ * This is a small bug fix release that resolves a couple of
+ backwards compatibility issues.
+- Release 0.19.0
+ * A highlight of this release is the addition of the popular
+ scale-invariant feature transform (SIFT) feature detector and
+ descriptor. This release also introduces a perceptual blur
+ metric, new pixel graph algorithms, and most functions now
+ operate in single-precision when single-precision inputs are
+ provided. Many other bug fixes, enhancements and performance
+ improvements are detailed below.
+ * A significant change in this release is in the treatment of
+ multichannel images. The existing multichannel argument to
+ functions has been deprecated in favor of a new channel_axis
+ argument. channel_axis can be used to specify which axis of an
+ array contains channel information (with channel_axis=None
+ indicating a grayscale image).
+ * scikit-image now uses "lazy loading", which enables users to
+ access the functions from all skimage submodules without the
+ overhead of eagerly importing all submodules. As a concrete
+ example, after calling "import skimage" a user can directly
+ call a function such as skimage.transform.warp whereas
+ previously it would have been required to first "import
+ skimage.transform".
+ * An exciting change on the development side is the introduction
+ of support for Pythran as an alternative to Cython for
+ generating compiled code. We plan to keep Cython support as
+ well going forward, so developers are free to use either one as
+ appropriate. For those curious about Pythran, a good overview
+ was given in the SciPy 2021 presentation, "Building SciPy
+ Kernels with Pythran"
+ (https://www.youtube.com/watch?v=6a9D9WL6ZjQ).
+ * This release now supports Python 3.7-3.10.
+- Release 0.18.3
+ * This is a small bugfix release for compatibility with Pooch 1.5
+ and SciPy 1.7.
+- Release 0.18.2
+ * This release fixes a couple of minor bugs.
+- Add skimage-fix-module-install.patch
+ * gh#scikit-image/scikit-image#6428
+
+-------------------------------------------------------------------
Old:
----
scikit-image-0.18.1.tar.gz
New:
----
scikit-image-0.19.3.tar.gz
skimage-fix-module-install.patch
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-scikit-image.spec ++++++
--- /var/tmp/diff_new_pack.kbaHYu/_old 2022-07-05 12:08:53.652506230 +0200
+++ /var/tmp/diff_new_pack.kbaHYu/_new 2022-07-05 12:08:53.660506242 +0200
@@ -1,7 +1,7 @@
#
-# spec file for package python-scikit-image
+# spec file
#
-# Copyright (c) 2021 SUSE LLC
+# Copyright (c) 2022 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,7 +16,6 @@
#
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%global flavor @BUILD_FLAVOR@%{nil}
%if "%{flavor}" == "test"
%define psuffix -test
@@ -25,54 +24,51 @@
%define psuffix %{nil}
%bcond_with test
%endif
-%define skip_python2 1
-# SciPy 1.6.0 dropped Python 3.6 and numpy 1.20 will soon
-%define skip_python36 1
Name: python-scikit-image%{psuffix}
-Version: 0.18.1
+Version: 0.19.3
Release: 0
Summary: Collection of algorithms for image processing in Python
License: BSD-3-Clause
URL: https://scikit-image.org/
Source0:
https://files.pythonhosted.org/packages/source/s/scikit-image/scikit-image-%{version}.tar.gz
-BuildRequires: %{python_module Cython >= 0.29.13}
-BuildRequires: %{python_module devel}
-BuildRequires: %{python_module numpy-devel >= 1.15.1}
+# PATCH-FIX-UPSTREAM skimage-fix-module-install.patch --
gh#scikit-image/scikit-image#6428
+Patch0: skimage-fix-module-install.patch
+BuildRequires: %{python_module Cython >= 0.29.21}
+BuildRequires: %{python_module devel >= 3.7}
+BuildRequires: %{python_module numpy-devel >= 1.17.0}
+BuildRequires: %{python_module packaging >= 20}
+BuildRequires: %{python_module pythran}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: freeimage-devel
BuildRequires: gcc-c++
BuildRequires: python-rpm-macros
-Requires: python-Pillow >= 4.3.0
+Requires: python-Pillow >= 6.1.0
Requires: python-PyWavelets >= 1.1.1
-Requires: python-imageio >= 2.3.0
-Requires: python-matplotlib >= 2.0.0
-Requires: python-networkx >= 2.0
-Requires: python-numpy >= 1.15.1
-Requires: python-scipy >= 1.0.1
+Requires: python-imageio >= 2.4.1
+Requires: python-networkx >= 2.2
+Requires: python-numpy >= 1.17.0
+Requires: python-packaging >= 20.0
+Requires: python-scipy >= 1.4.1
Requires: python-tifffile >= 2019.7.26
Requires(post): update-alternatives
-Requires(preun): update-alternatives
+Requires(postun):update-alternatives
Recommends: python-QtPy
Recommends: python-SimpleITK
-Recommends: python-astropy >= 1.2.0
+Recommends: python-astropy >= 3.1.2
Recommends: python-cloudpickle >= 0.2.1
-Recommends: python-dask-array >= 0.15.0
+Recommends: python-dask-array >= 1.0.0
Recommends: python-imread >= 0.5.1
+Recommends: python-matplotlib >= 3.0.3
+Recommends: python-pooch >= 1.3.0
Recommends: python-pyamg
-Recommends: python-pooch >= 0.5.2
%if %{with test}
-BuildRequires: %{python_module Pillow >= 4.3.0}
-BuildRequires: %{python_module PyWavelets >= 1.1.1}
-BuildRequires: %{python_module imageio >= 2.3.0}
-BuildRequires: %{python_module matplotlib >= 2.0.0}
-BuildRequires: %{python_module networkx >= 2.0}
+BuildRequires: %{python_module dask-array >= 1.0.0}
+BuildRequires: %{python_module matplotlib >= 3.0.3}
BuildRequires: %{python_module pytest >= 4.0}
BuildRequires: %{python_module pytest-localserver}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module scikit-image = %{version}}
-BuildRequires: %{python_module scipy >= 1.0.1}
-BuildRequires: %{python_module tifffile >= 2019.7.26}
%endif
# /SECTION
%python_subpackages
@@ -83,7 +79,7 @@
%prep
%if !%{with test}
-%setup -q -n scikit-image-%{version}
+%autosetup -p1 -n scikit-image-%{version}
#remove shebang
sed -i '1 {\@usr/bin/env@ d}' skimage/*/setup.py skimage/future/graph/setup.py
%else
@@ -107,22 +103,17 @@
%post
%python_install_alternative skivi
-%preun
+%postun
%python_uninstall_alternative skivi
%endif
%if %{with test}
%check
-# test_wrap_around - fails randomly
https://github.com/scikit-image/scikit-image/issues/3237
-skiptests="test_wrap_around"
-# test_structural_similarity_dtype - also fails randomly on 32bit
-skiptests+=" or test_structural_similarity_dtype"
-# test_colorconv.py hdx and hed tests segfault
-skiptests+=" or test_hdx_rgb or test_hed_rgb"
-# these test require pooch to download data files, which we don't have and
which needs internet to work anyway
-# see skimage/data/_registry.py
-skiptests+=" or test_ndim or test_skin or test_custom_load_func_w_kwarg"
-%pytest_arch -v --pyargs skimage -n auto -k "not ($skiptests)"
+# fails randomly https://github.com/scikit-image/scikit-image/issues/3237
+donttest+="test_wrap_around"
+# fails randomly on all platforms
+donttest+=" or test_structural_similarity_dtype"
+%pytest_arch -v --pyargs skimage -n auto -k "not ($donttest)"
%endif
%if !%{with test}
@@ -131,7 +122,7 @@
%doc CONTRIBUTORS.txt TODO.txt
%python_alternative %{_bindir}/skivi
%{python_sitearch}/skimage/
-%{python_sitearch}/scikit_image-%{version}-py*.egg-info
+%{python_sitearch}/scikit_image-%{version}*-info
%endif
%changelog
++++++ scikit-image-0.18.1.tar.gz -> scikit-image-0.19.3.tar.gz ++++++
/work/SRC/openSUSE:Factory/python-scikit-image/scikit-image-0.18.1.tar.gz
/work/SRC/openSUSE:Factory/.python-scikit-image.new.1548/scikit-image-0.19.3.tar.gz
differ: char 5, line 1
++++++ skimage-fix-module-install.patch ++++++
Index: scikit-image-0.19.3/setup.py
===================================================================
--- scikit-image-0.19.3.orig/setup.py
+++ scikit-image-0.19.3/setup.py
@@ -246,7 +246,8 @@ if __name__ == "__main__":
install_requires=INSTALL_REQUIRES,
extras_require=extras_require,
python_requires='>=3.7',
- packages=setuptools.find_packages(exclude=['doc', 'benchmarks']),
+ packages=setuptools.find_packages(
+ exclude=['doc', 'doc.*', 'benchmarks']),
package_data={
# distribute Cython source files in the wheel
"": ["*.pyx", "*.pxd", "*.pxi", ""],
