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here is the log from the commit of package python-fastcluster for
openSUSE:Factory checked in at 2022-09-29 18:13:29
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-fastcluster (Old)
and /work/SRC/openSUSE:Factory/.python-fastcluster.new.2275 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-fastcluster"
Thu Sep 29 18:13:29 2022 rev:11 rq:1006738 version:1.2.6
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-fastcluster/python-fastcluster.changes
2022-01-15 20:05:40.533781257 +0100
+++
/work/SRC/openSUSE:Factory/.python-fastcluster.new.2275/python-fastcluster.changes
2022-09-29 18:14:17.811365416 +0200
@@ -1,0 +2,10 @@
+Wed Sep 28 14:00:59 UTC 2022 - Arun Persaud <a...@gmx.de>
+
+- update to version 1.2.6:
+ * Move to GitHub action for CI. No code changes.
+
+- changes from version 1.2.5:
+ * Updated pyproject.toml to work with Python 3.10 and future Python
+ versions.
+
+-------------------------------------------------------------------
Old:
----
fastcluster-1.2.4.tar.gz
New:
----
fastcluster-1.2.6.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-fastcluster.spec ++++++
--- /var/tmp/diff_new_pack.zk1MnT/_old 2022-09-29 18:14:18.395366557 +0200
+++ /var/tmp/diff_new_pack.zk1MnT/_new 2022-09-29 18:14:18.399366566 +0200
@@ -20,7 +20,7 @@
%define skip_python36 1
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: python-fastcluster
-Version: 1.2.4
+Version: 1.2.6
Release: 0
Summary: Hierarchical clustering routines for Python
License: BSD-2-Clause
++++++ fastcluster-1.2.4.tar.gz -> fastcluster-1.2.6.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/CITATION.txt
new/fastcluster-1.2.6/CITATION.txt
--- old/fastcluster-1.2.4/CITATION.txt 2021-05-23 17:25:34.000000000 +0200
+++ new/fastcluster-1.2.6/CITATION.txt 2022-02-27 11:25:41.000000000 +0100
@@ -2,4 +2,4 @@
Daniel M??llner, fastcluster: Fast Hierarchical, Agglomerative Clustering
Routines for R and Python, Journal of Statistical Software, 53 (2013), no. 9,
-1???18, https://www.jstatsoft.org/v53/i09/.
+1???18, https://doi.org/10.18637/jss.v053.i09.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/NEWS.txt
new/fastcluster-1.2.6/NEWS.txt
--- old/fastcluster-1.2.4/NEWS.txt 2021-08-21 23:07:51.000000000 +0200
+++ new/fastcluster-1.2.6/NEWS.txt 2022-02-27 11:25:41.000000000 +0100
@@ -240,3 +240,11 @@
Version 1.2.4, 08/21/2021
??? Fixed NumPy versions in Travis builds.
+
+Version 1.2.5, 02/26/2022
+
+??? Updated pyproject.toml to work with Python 3.10 and future Python versions.
+
+Version 1.2.6, 02/27/2022
+
+??? Move to GitHub action for CI. No code changes.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/PKG-INFO
new/fastcluster-1.2.6/PKG-INFO
--- old/fastcluster-1.2.4/PKG-INFO 2021-08-22 09:27:51.725234700 +0200
+++ new/fastcluster-1.2.6/PKG-INFO 2022-02-27 11:25:56.448010700 +0100
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: fastcluster
-Version: 1.2.4
+Version: 1.2.6
Summary: Fast hierarchical clustering routines for R and Python.
Home-page: http://danifold.net
Author: Daniel M??llner
@@ -80,6 +80,6 @@
Reference: Daniel M??llner, *fastcluster: Fast Hierarchical, Agglomerative
Clustering Routines for R and Python*, Journal of Statistical Software, **53**
-(2013), no. 9, 1???18, https://www.jstatsoft.org/v53/i09/.
+(2013), no. 9, 1???18, https://doi.org/10.18637/jss.v053.i09.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/README.txt
new/fastcluster-1.2.6/README.txt
--- old/fastcluster-1.2.4/README.txt 2021-05-24 12:24:15.000000000 +0200
+++ new/fastcluster-1.2.6/README.txt 2022-02-27 11:25:41.000000000 +0100
@@ -47,7 +47,7 @@
Usage
???????????????
-1.???R
+1. R
????????????
In R, load the package with the following command:
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/dev-requirements.txt
new/fastcluster-1.2.6/dev-requirements.txt
--- old/fastcluster-1.2.4/dev-requirements.txt 2018-05-13 22:28:24.000000000
+0200
+++ new/fastcluster-1.2.6/dev-requirements.txt 1970-01-01 01:00:00.000000000
+0100
@@ -1,2 +0,0 @@
-wheel
-conda
Binary files old/fastcluster-1.2.4/docs/fastcluster.pdf and
new/fastcluster-1.2.6/docs/fastcluster.pdf differ
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/docs/fastcluster.tex
new/fastcluster-1.2.6/docs/fastcluster.tex
--- old/fastcluster-1.2.4/docs/fastcluster.tex 2021-08-21 23:06:01.000000000
+0200
+++ new/fastcluster-1.2.6/docs/fastcluster.tex 2022-02-27 11:25:41.000000000
+0100
@@ -1,4 +1,4 @@
-\def\fastclusterversion{1.2.4}
+\def\fastclusterversion{1.2.6}
\documentclass[fontsize=10pt,paper=letter,BCOR=-6mm,DIV=8]{scrartcl}
\usepackage[utf8]{inputenc}
\usepackage{lmodern}
@@ -94,7 +94,7 @@
%\VignetteIndexEntry{User's manual}
\title{The \textit{fastcluster} package: User's manual}
\author{\href{http://danifold.net}{Daniel M??llner}}
-\date{August 21, 2021}
+\date{February 27, 2022}
\subtitle{Version \fastclusterversion}
\maketitle
@@ -122,7 +122,7 @@
If you use the fastcluster package for scientific work, please cite it as:
\begin{quote}
-Daniel M??llner, \textit{fastcluster: Fast Hierarchical, Agglomerative
Clustering Routines for R and Python}, Journal of Statistical Software,
\textbf{53} (2013), no.~9, 1--18, \url{https://www.jstatsoft.org/v53/i09/}.
+Daniel M??llner, \textit{fastcluster: Fast Hierarchical, Agglomerative
Clustering Routines for R and Python}, Journal of Statistical Software,
\textbf{53} (2013), no.~9, 1--18, \url{https://doi.org/10.18637/jss.v053.i09}.
\end{quote}
The \hyperref[yule]{???Yule??? distance function} changed in the Python
interface of fastcluster version 1.2.0. This is following a
\href{https://github.com/scipy/scipy/commit/3b22d1da98dc1b5f64bc944c21f398d4ba782bce}{change
in SciPy 1.6.3}. \textbf{It is recommended to use fastcluster version 1.1.x
together with SciPy versions before 1.6.3 and fastcluster 1.2.x with SciPy
$\geq{}$1.6.3.} The R interface does have the ???Yule??? distance function,
hence is not affected by this change.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/fastcluster.egg-info/PKG-INFO
new/fastcluster-1.2.6/fastcluster.egg-info/PKG-INFO
--- old/fastcluster-1.2.4/fastcluster.egg-info/PKG-INFO 2021-08-22
09:27:51.000000000 +0200
+++ new/fastcluster-1.2.6/fastcluster.egg-info/PKG-INFO 2022-02-27
11:25:56.000000000 +0100
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: fastcluster
-Version: 1.2.4
+Version: 1.2.6
Summary: Fast hierarchical clustering routines for R and Python.
Home-page: http://danifold.net
Author: Daniel M??llner
@@ -80,6 +80,6 @@
Reference: Daniel M??llner, *fastcluster: Fast Hierarchical, Agglomerative
Clustering Routines for R and Python*, Journal of Statistical Software, **53**
-(2013), no. 9, 1???18, https://www.jstatsoft.org/v53/i09/.
+(2013), no. 9, 1???18, https://doi.org/10.18637/jss.v053.i09.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/fastcluster.egg-info/SOURCES.txt
new/fastcluster-1.2.6/fastcluster.egg-info/SOURCES.txt
--- old/fastcluster-1.2.4/fastcluster.egg-info/SOURCES.txt 2021-08-22
09:27:51.000000000 +0200
+++ new/fastcluster-1.2.6/fastcluster.egg-info/SOURCES.txt 2022-02-27
11:25:56.000000000 +0100
@@ -4,7 +4,6 @@
MANIFEST.in
NEWS.txt
README.txt
-dev-requirements.txt
fastcluster.py
pyproject.toml
setup.py
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/fastcluster.py
new/fastcluster-1.2.6/fastcluster.py
--- old/fastcluster-1.2.4/fastcluster.py 2021-08-21 23:08:31.000000000
+0200
+++ new/fastcluster-1.2.6/fastcluster.py 2022-02-27 11:25:41.000000000
+0100
@@ -20,7 +20,7 @@
"""
__all__ = ['single', 'complete', 'average', 'weighted', 'ward', 'centroid',
'median', 'linkage', 'linkage_vector']
-__version_info__ = ('1', '2', '4')
+__version_info__ = ('1', '2', '6')
__version__ = '.'.join(__version_info__)
from numpy import double, empty, array, ndarray, var, cov, dot, expand_dims, \
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/pyproject.toml
new/fastcluster-1.2.6/pyproject.toml
--- old/fastcluster-1.2.4/pyproject.toml 2021-01-20 16:29:43.000000000
+0100
+++ new/fastcluster-1.2.6/pyproject.toml 2022-02-27 11:25:41.000000000
+0100
@@ -7,14 +7,7 @@
# extension was compiled with a numpy 1.15 and the user has 1.12 on their
# system, the extension will not work.
#
-# For each version of Python, we choose the earliest versions of numpy that
-# has binary wheels for that Python version for window, mac, and linux.
-# Otherwise building fastcluster would require compiling numpy which
-# would make things much, much slower.
+# Scipy's "oldest_supported_numpy" package does this work for us.
requires = ["setuptools",
"wheel",
- "numpy==1.10.4; python_version<'3.6'",
- "numpy==1.12.1; python_version=='3.6'",
- "numpy==1.15.0; python_version=='3.7'",
- "numpy==1.17.3; python_version=='3.8'",
- "numpy==1.19.3; python_version=='3.9'"]
+ "oldest_supported_numpy"]
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/setup.py
new/fastcluster-1.2.6/setup.py
--- old/fastcluster-1.2.4/setup.py 2021-05-24 12:25:44.000000000 +0200
+++ new/fastcluster-1.2.6/setup.py 2022-02-27 11:25:41.000000000 +0100
@@ -79,7 +79,7 @@
Reference: Daniel M??llner, *fastcluster: Fast Hierarchical, Agglomerative
Clustering Routines for R and Python*, Journal of Statistical Software, **53**
-(2013), no. 9, 1???18, https://www.jstatsoft.org/v53/i09/.
+(2013), no. 9, 1???18, https://doi.org/10.18637/jss.v053.i09.
""",
long_description_content_type='text/markdown',
python_requires='>=3',
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/tests/nantest.py
new/fastcluster-1.2.6/tests/nantest.py
--- old/fastcluster-1.2.4/tests/nantest.py 2021-08-21 23:08:43.000000000
+0200
+++ new/fastcluster-1.2.6/tests/nantest.py 2022-02-27 11:25:41.000000000
+0100
@@ -10,7 +10,7 @@
import numpy as np
import fastcluster
-version = '1.2.4'
+version = '1.2.6'
if fastcluster.__version__ != version:
raise ValueError('Wrong module version: {} instead of
{}.'.format(fastcluster.__version__, version))
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/tests/test.py
new/fastcluster-1.2.6/tests/test.py
--- old/fastcluster-1.2.4/tests/test.py 2021-08-21 23:08:54.000000000 +0200
+++ new/fastcluster-1.2.6/tests/test.py 2022-02-27 11:25:41.000000000 +0100
@@ -11,7 +11,7 @@
from scipy.spatial.distance import pdist, squareform
import math
-version = '1.2.4'
+version = '1.2.6'
if fc.__version__ != version:
raise ValueError('Wrong module version: {} instead of
{}.'.format(fc.__version__, version))
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/fastcluster-1.2.4/tests/vectortest.py
new/fastcluster-1.2.6/tests/vectortest.py
--- old/fastcluster-1.2.4/tests/vectortest.py 2021-08-21 23:09:01.000000000
+0200
+++ new/fastcluster-1.2.6/tests/vectortest.py 2022-02-27 11:25:41.000000000
+0100
@@ -13,7 +13,7 @@
from scipy.spatial.distance import pdist, squareform
import math
-version = '1.2.4'
+version = '1.2.6'
if fc.__version__ != version:
raise ValueError('Wrong module version: {} instead of
{}.'.format(fc.__version__, version))
