Script 'mail_helper' called by obssrc Hello community, here is the log from the commit of package python-scipy for openSUSE:Factory checked in at 2022-10-11 18:01:23 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/python-scipy (Old) and /work/SRC/openSUSE:Factory/.python-scipy.new.2275 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-scipy" Tue Oct 11 18:01:23 2022 rev:54 rq:1007747 version:1.9.1 Changes: -------- --- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes 2022-08-04 13:23:25.416491876 +0200 +++ /work/SRC/openSUSE:Factory/.python-scipy.new.2275/python-scipy.changes 2022-10-11 18:03:51.365920527 +0200 @@ -1,0 +2,24 @@ +Sat Sep 10 23:43:22 UTC 2022 - Ben Greiner <c...@bnavigator.de> + +- Update to version 1.9.1 + * SciPy 1.9.1 is a bug-fix release with no new features compared + to 1.9.0. Notably, some important meson build fixes are + included. +- Release 1.9.0 + * Full changelog at + https://docs.scipy.org/doc/scipy/release.1.9.0.html +- Highlights of the 1.9.0 release: + * We have modernized our build system to use meson, + substantially improving our build performance, and providing + better build-time configuration and cross-compilation support, + * Added scipy.optimize.milp, new function for mixed-integer + linear programming, + * Added scipy.stats.fit for fitting discrete and continuous + distributions to data, + * Tensor-product spline interpolation modes were added to + scipy.interpolate.RegularGridInterpolator, + * A new global optimizer (DIviding RECTangles algorithm) + scipy.optimize.direct. +- Switch to meson-python PEP517 build + +------------------------------------------------------------------- Old: ---- python-scipy-rpmlintrc scipy-1.8.1.tar.gz New: ---- scipy-1.9.1.tar.gz ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ python-scipy.spec ++++++ --- /var/tmp/diff_new_pack.MHOCEH/_old 2022-10-11 18:03:52.333922092 +0200 +++ /var/tmp/diff_new_pack.MHOCEH/_new 2022-10-11 18:03:52.337922099 +0200 @@ -17,7 +17,7 @@ %global flavor @BUILD_FLAVOR@%{nil} -%define _ver 1_8_0 +%define _ver 1_9_1 %define shortname scipy %define pname python-%{shortname} %define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_') @@ -90,27 +90,26 @@ # TODO explore debundling Boost for standard and hpc -%{?!python_module:%define python_module() python3-%{**}} -%define skip_python2 1 - Name: %{package_name} -Version: 1.8.1 +Version: 1.9.1 Release: 0 Summary: Scientific Tools for Python License: BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0 Group: Development/Libraries/Python URL: https://www.scipy.org Source0: https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz -Source100: python-scipy-rpmlintrc -BuildRequires: %{python_module Cython >= 0.29.18} +BuildRequires: %{python_module Cython >= 0.29.21} BuildRequires: %{python_module devel >= 3.8} +BuildRequires: %{python_module meson-python >= 0.8.1} +BuildRequires: %{python_module pip} BuildRequires: %{python_module pybind11 >= 2.4.3} BuildRequires: %{python_module pybind11-devel >= 2.4.3} -BuildRequires: %{python_module pythran >= 0.10.0} -BuildRequires: %{python_module setuptools} +BuildRequires: %{python_module pythran >= 0.9.12} +BuildRequires: %{python_module wheel} BuildRequires: fdupes -BuildRequires: python-rpm-macros -BuildRequires: swig +BuildRequires: meson >= 0.62.2 +BuildRequires: pkg-config +BuildRequires: python-rpm-macros >= 20220911 %if "%{flavor}" == "" ExclusiveArch: do_not_build %endif @@ -120,10 +119,10 @@ BuildRequires: %{python_module threadpoolctl} %endif %if %{without hpc} -BuildRequires: %{python_module numpy-devel >= 1.17.3} +BuildRequires: %{python_module numpy-devel >= 1.18.5} BuildRequires: gcc-c++ BuildRequires: gcc-fortran -Requires: python-numpy >= 1.17.3 +Requires: python-numpy >= 1.18.5 Requires: python-pybind11 >= 2.4.3 %if %{with openblas} BuildRequires: openblas-devel @@ -138,7 +137,7 @@ BuildRequires: lua-lmod BuildRequires: suse-hpc >= 0.3 Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc -Requires: python-numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc >= 1.17.3 +Requires: python-numpy%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc >= 1.18.5 %endif %python_subpackages @@ -154,31 +153,31 @@ %prep %autosetup -p1 -n scipy-%{version} find . -type f -name "*.py" -exec sed -i "s|#!%{_bindir}/env python||" {} \; -echo ' ignore:.*The distutils.* is deprecated.*:DeprecationWarning' >> pytest.ini %ifarch i586 # Limit double floating point precision for x87, triggered by GCC 12. %global optflags %(echo "%{optflags} -ffloat-store") %endif +%if !%{with openblas} +# Edit the options file until we have a way to provide options to meson-python from command line or environment +# https://github.com/FFY00/meson-python/pull/122 +sed -i "s/option('blas', type: 'string', value: 'openblas'/option('blas', type: 'string', value: 'blas'/" meson_options.txt +sed -i "s/option('lapack', type: 'string', value: 'openblas'/option('lapack', type: 'string', value: 'lapack'/" meson_options.txt +%endif + %if !%{with test} %build +# makes sure that the cython and pythran commands from the correct flavor are in PATH +%python_flavored_alternatives %{python_expand # %if %{with hpc} py_ver=%{$python_version} %hpc_setup module load $python-numpy -export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)" -export OPENBLAS=$OPENBLAS_LIB -%else -export CFLAGS="%{optflags} -fno-strict-aliasing" -export BLAS=%{_libdir} -export LAPACK=%{_libdir} - %if %{with openblas} -export OPENBLAS=%{_libdir} - %endif %endif -$python setup.py config_fc --fcompiler=gnu95 --noarch build +export CFLAGS="%{optflags} -fno-strict-aliasing" +%{$python_pyproject_wheel} } %install @@ -187,14 +186,12 @@ %hpc_setup module load $python-numpy %endif -# Note: SciPy 1.9 will switch to Meson and support for numpy.distutils will be removed in 1.10 -$python setup.py install --prefix=%{p_prefix} --root=%{buildroot} -# Setuptools 60+ unexpectedly writes the egg-info in CamelCase, -# upstream published dist-info is lowercase; keep lowercase until above mentioned switch happens. -if [ -d %{buildroot}%{p_python_sitearch_expand}/SciPy-%{version}-py%{$python_bin_suffix}.egg-info ]; then - mv %{buildroot}%{p_python_sitearch_expand}/SciPy-%{version}-py%{$python_bin_suffix}.egg-info \ - %{buildroot}%{p_python_sitearch_expand}/scipy-%{version}-py%{$python_bin_suffix}.egg-info -fi +%{$python_pyproject_install --prefix %{p_prefix}} +# https://github.com/scipy/scipy/issues/16310, delete in order to avoid rpmlint errors +rm %{buildroot}%{p_python_sitearch_expand}/scipy/linalg/_blas_subroutines.h +rm %{buildroot}%{p_python_sitearch_expand}/scipy/linalg/_lapack_subroutines.h +rm %{buildroot}%{p_python_sitearch_expand}/scipy/special/_ufuncs_cxx_defs.h +rm %{buildroot}%{p_python_sitearch_expand}/scipy/special/_ufuncs_defs.h %fdupes %{buildroot}%{p_python_sitearch_expand} } @@ -251,14 +248,26 @@ donttest+=" or (TestBSR and test_scalar_idx_dtype)" # error while getting entropy donttest+=" or (test_cont_basic and 500-200-ncf-arg74)" -# fails on i586 -%ifarch i586 -donttest+=" or (test_linprog and test_bug_6690)" -donttest+=" or (test_hausdorff and test_brute_force_comparison_forward)" -donttest+=" or (test_hausdorff and test_2d_data_forward)" -donttest+=" or (test_iterative and test_x0_equals_Mb)" +%ifarch %ix86 %arm +# fails on 32bit +mark32bit="or xfail_on_32bit" +# segfault(overflow) +donttest+=" or (test_fitpack and test_bisplev_integer_overflow)" +# precision errors +donttest+=" or (test_peak_finding and TestFindPeaksCwt and test_find_peaks_exact)" +donttest+=" or (test_peak_finding and TestFindPeaksCwt and test_find_peaks_withnoise)" +donttest+=" or (test_iterative and test_x0_equals_Mb and bicgstab)" +donttest+=" or (test_orthogonal and test_roots_gegenbauer)" +donttest+=" or (test_discrete_basic and test_rv_sample)" +donttest+=" or (test_distributions and TestLevyStable and nolan_samples and pct_range0-alpha_range0-beta_range0)" +donttest+=" or (test_distributions and TestLevyStable and test_location_scale and pdf)" +%endif +%ifarch %arm +donttest+=" or (test_cython_api and eval_sh_chebyt)" +donttest+=" or (test_stats_boost_ufunc)" %endif -%python_exec runtests.py -vv --no-build -m fast -- -k "not ($donttest)" +mv scipy scipy.dont-import-me +%pytest_arch --pyargs scipy -m "not (slow or xslow $mark32bit)" -k "not ($donttest)" # prevent failing debuginfo extraction because we did not create anything for testing touch debugsourcefiles.list %endif ++++++ scipy-1.8.1.tar.gz -> scipy-1.9.1.tar.gz ++++++ /work/SRC/openSUSE:Factory/python-scipy/scipy-1.8.1.tar.gz /work/SRC/openSUSE:Factory/.python-scipy.new.2275/scipy-1.9.1.tar.gz differ: char 5, line 1
