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Hello community,
here is the log from the commit of package python3-espressomd for
openSUSE:Factory checked in at 2023-01-28 18:43:00
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python3-espressomd (Old)
and /work/SRC/openSUSE:Factory/.python3-espressomd.new.32243 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python3-espressomd"
Sat Jan 28 18:43:00 2023 rev:16 rq:1061493 version:4.2.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/python3-espressomd/python3-espressomd.changes
2022-09-15 23:01:15.161564748 +0200
+++
/work/SRC/openSUSE:Factory/.python3-espressomd.new.32243/python3-espressomd.changes
2023-01-28 19:03:30.696778213 +0100
@@ -1,0 +2,6 @@
+Thu Jan 26 19:46:39 UTC 2023 - Jean-Noel Grad <jg...@icp.uni-stuttgart.de>
+
+- added numpy-1.24.patch to fix the testsuite (see
+ gh#espressomd/espresso#4635)
+
+-------------------------------------------------------------------
New:
----
numpy-1.24.patch
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python3-espressomd.spec ++++++
--- /var/tmp/diff_new_pack.D9Vtwd/_old 2023-01-28 19:03:31.264781345 +0100
+++ /var/tmp/diff_new_pack.D9Vtwd/_new 2023-01-28 19:03:31.272781388 +0100
@@ -1,7 +1,7 @@
#
# spec file
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
# Copyright (c) 2014 Christoph Junghans
#
# All modifications and additions to the file contributed by third parties
@@ -52,6 +52,8 @@
Patch3: rpath.patch
# PATCH-FIX-UPSTREAM fix-broken-fft-check.patch gh#espressomd/espresso#4567
Patch4: fix-broken-fft-check.patch
+# PATCH-FIX-UPSTREAM numpy-1.24.patch gh#espressomd/espresso#4635
+Patch5: numpy-1.24.patch
# According to gh#espressomd/espresso#4537 32bit architectures are not
supported any more
ExcludeArch: %{ix86}
BuildRequires: cmake
++++++ numpy-1.24.patch ++++++
commit bff5e2703d4371f06f281d48181431558066d566
Author: Jean-Noël Grad <jg...@icp.uni-stuttgart.de>
Date: Tue Dec 20 19:36:34 2022 +0100
tests: Replace deprecated numpy option
Option 'normed' in numpy.histogramdd was deprecated since 1.15 and
removed in 1.24.
---
testsuite/python/observable_profile.py | 2 +-
testsuite/python/observable_profileLB.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
--- a/testsuite/python/observable_profile.py
+++ b/testsuite/python/observable_profile.py
@@ -51,7 +51,7 @@ def test_density_profile(self):
obs_bin_centers = density_profile.bin_centers()
np_hist, np_edges = tests_common.get_histogram(
np.copy(self.system.part.all().pos), self.kwargs, 'cartesian',
- normed=True)
+ density=True)
np_hist *= len(self.system.part)
np.testing.assert_array_almost_equal(obs_data, np_hist)
for i in range(3):
--- a/testsuite/python/observable_profileLB.py
+++ b/testsuite/python/observable_profileLB.py
@@ -91,7 +91,7 @@ def test_velocity_profile(self):
obs_edges = obs.call_method("edges")
_, np_edges = tests_common.get_histogram(
np.zeros([1, 3]), LB_VELOCITY_PROFILE_PARAMS, 'cartesian',
- normed=True)
+ density=True)
for i in range(3):
np.testing.assert_array_almost_equal(obs_edges[i], np_edges[i])
for x in range(obs_data.shape[0]):
