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here is the log from the commit of package python-xarray for openSUSE:Factory
checked in at 2023-09-13 20:45:44
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-xarray (Old)
and /work/SRC/openSUSE:Factory/.python-xarray.new.1766 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-xarray"
Wed Sep 13 20:45:44 2023 rev:43 rq:1110839 version:2023.8.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-xarray/python-xarray.changes
2023-05-31 21:54:53.501145205 +0200
+++ /work/SRC/openSUSE:Factory/.python-xarray.new.1766/python-xarray.changes
2023-09-13 20:47:59.349403643 +0200
@@ -1,0 +2,94 @@
+Sun Sep 10 16:38:28 UTC 2023 - Ben Greiner <c...@bnavigator.de>
+
+- Update to 2023.8.0
+ * This release brings changes to minimum dependencies, allows
+ reading of datasets where a dimension name is associated with a
+ multidimensional variable (e.g. finite volume ocean model
+ output), and introduces a new xarray.Coordinates object.
+ ## Announcements
+ * The xarray.Variable class is being refactored out to a new
+ project title 'namedarray'. See the design doc for more
+ details. Reach out to us on this discussion topic if you have
+ any thoughts.
+ ## What's Changed
+ * Use variable name in all exceptions raised in as_variable by
+ @ZedThree in #7995
+ * Allow opening datasets with nD dimenson coordinate variables.
+ by @dcherian in #7989
+ * join together duplicate entries in the text repr by @keewis in
+ #7225
+ * Expose "Coordinates" as part of Xarray's public API by @benbovy
+ in #7368
+ * Update interpolate_na in dataset.py by @ilgast in #7974
+ * Add HDF5 Section to read/write docs page by @rwegener2 in #8012
+ * Add examples to docstrings by @harshitha1201 in #7937
+ * (chore) min versions bump by @jhamman in #8022
+ * Automatically chunk other in GroupBy binary ops. by @dcherian
+ in #7684
+ * change cumproduct to cumprod by @quantsnus in #8031
+ * Reduce pre-commit update frequency to monthly from weekly. by
+ @dcherian in #8033
+ * sort when encoding coordinates for deterministic outputs by
+ @itcarroll in #8034
+ * Zarr : Allow setting write_empty_chunks by @RKuttruff in #8016
+ * Count documentation by @Articoking in #8057
+ * unpin numpy by @keewis in #8061
+- Release 2023.7.0
+ * This release brings improvements to the documentation on
+ wrapping numpy-like arrays, improved docstrings, and bug fixes.
+ ## What's Changed
+ * Allow cubed arrays to be passed to flox groupby by @TomNicholas
+ in #7941
+ * Duck array documentation improvements by @TomNicholas in #7911
+ * Docstring examples by @harshitha1201 in #7881
+ * Chunked array docs by @TomNicholas in #7951
+ * ensure no forward slashes in names for HDF5-based backends by
+ @kmuehlbauer in #7953
+ * Move absolute path finder from open_mfdataset to own function
+ by @Illviljan in #7968
+ * Skip broken tests on Python 3.11 and Windows by @Illviljan in
+ #7972
+ * Examples added to docstrings by @harshitha1201 in #7936
+ * Fix typo in zarr.py by @johmathe in #7983
+ * Improve explanation in example "Working with Multidimensional
+ Coordinates" by @yvonnefroehlich in #7984
+ * Remove hue_style from plot1d docstring by @Illviljan in #7925
+- Release 2023.06.0
+ * This release adds features to curvefit, improves the
+ performance of concatenation, and fixes various bugs.
+ ## What's Changed
+ * Array API fixes for astype by @TomNicholas in #7847
+ * Add type hints to test_dtypes by @Illviljan in #7858
+ * adapt the pint + dask test to the newest version of pint by
+ @keewis in #7855
+ * Avoid explicit loop when updating OrderedSet by @Illviljan in
+ #7857
+ * Improve to_dask_dataframe performance by @Illviljan in #7844
+ * Changed duck typing exception to: (ImportError, AttributeError)
+ by @vhaasteren in #7874
+ * defer to numpy for the expected result by @keewis in #7875
+ * deprecate the cdms2 conversion methods by @keewis in #7876
+ * Implement multidimensional initial guess and bounds for
+ curvefit by @mgunyho in #7821
+ * Improve concat performance by @Illviljan in #7824
+ * Fix .groupby(multi index level) by @dcherian in #7830
+ * don't use CacheFileManager.__del__ on interpreter shutdown by
+ @keewis in #7880
+ * fix polyfit changing the original object by @malmans2 in #7900
+ * Fix flaky doctest for curvefit by @mgunyho in #7893
+ * Ensure dtype of reindex result matches dtype of the original
+ DataArray by @andersy005 in #7917
+ * Add errors option to curvefit by @mgunyho in #7891
+ * CF encoding should preserve vlen dtype for empty arrays by
+ @tomwhite in #7862
+ * use trusted publishers instead of a API token by @keewis in
+ #7899
+ * Add cfgrib,ipywidgets to doc env by @dcherian in #7888
+ * Fix regression with grouper object on an IndexVariable by
+ @mwtoews in #7920
+ * Fix check for chunk_store in zarr backend by @juntyr in #7923
+ * fixing rolling_window issue with cupy by @negin513 in #7938
+- Add xarray-pr8139-pandas-fill_value.patch gh#pydata/xarray#8125,
+ gh#pydata/xarray#8139
+
+-------------------------------------------------------------------
Old:
----
xarray-2023.5.0.tar.gz
New:
----
xarray-2023.8.0.tar.gz
xarray-pr8139-pandas-fill_value.patch
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-xarray.spec ++++++
--- /var/tmp/diff_new_pack.QIcdDa/_old 2023-09-13 20:48:00.481444027 +0200
+++ /var/tmp/diff_new_pack.QIcdDa/_new 2023-09-13 20:48:00.481444027 +0200
@@ -18,7 +18,7 @@
%{?sle15_python_module_pythons}
Name: python-xarray
-Version: 2023.5.0
+Version: 2023.8.0
Release: 0
Summary: N-D labeled arrays and datasets in Python
License: Apache-2.0
@@ -27,15 +27,19 @@
# PATCH-FEATURE-UPSTREAM local_dataset.patch gh#pydata/xarray#5377
mc...@suse.com
# fix xr.tutorial.open_dataset to work with the preloaded cache.
Patch0: local_dataset.patch
+# PATCH-FIX-UPSTREAM xarray-pr8139-pandas-fill_value.patch
gh#pydata/xarray#8125, gh#pydata/xarray#8139
+Patch1:
https://github.com/pydata/xarray/pull/8139.patch#/xarray-pr8139-pandas-fill_value.patch
BuildRequires: %{python_module base >= 3.9}
BuildRequires: %{python_module numpy-devel >= 1.20}
BuildRequires: %{python_module packaging >= 21.3}
BuildRequires: %{python_module pandas >= 1.3}
+BuildRequires: %{python_module pip}
BuildRequires: %{python_module setuptools_scm}
BuildRequires: %{python_module setuptools}
+BuildRequires: %{python_module wheel}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
-Requires: python-numpy >= 1.21
+Requires: python-numpy >= 1.22
Requires: python-packaging >= 21.3
Requires: python-pandas >= 1.4
Provides: python-xray = %{version}
@@ -68,9 +72,8 @@
#/SECTION
# SECTION tests
BuildRequires: %{python_module Bottleneck}
-# not available on python 3.11
-#BuildRequires: %%{python_module dask-dataframe}
-#BuildRequires: %%{python_module dask-diagnostics}
+BuildRequires: %{python_module dask-dataframe}
+BuildRequires: %{python_module dask-diagnostics}
BuildRequires: %{python_module h5netcdf}
BuildRequires: %{python_module matplotlib}
BuildRequires: %{python_module netCDF4}
@@ -97,22 +100,22 @@
chmod -x xarray/util/print_versions.py
%build
-%python_build
+%pyproject_wheel
%install
-%python_install
+%pyproject_install
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
-# OOM crashes the whole vm or even the local host running osc:
https://github.com/pydata/xarray/issues/6854
-donttest="nczarr"
+# obs file open race conditions?
+donttest="(test_open_mfdataset_manyfiles and (h5netcdf or netCDF4))"
if [ $(getconf LONG_BIT) -eq 32 ]; then
# https://github.com/pydata/xarray/issues/5341
# https://github.com/pydata/xarray/issues/5375
# still precision problems in 2022.11.0
donttest="$donttest or (test_interpolate_chunk_advanced and linear)"
# tests for 64bit types
- donttest="$donttest or TestZarrDictStore or TestZarrDirectoryStore"
+ donttest="$donttest or TestZarrDictStore or TestZarrDirectoryStore or
TestZarrWriteEmpty"
fi
%pytest -n auto -rsEf -k "not ($donttest)" xarray
@@ -120,6 +123,5 @@
%doc README.md
%license LICENSE licenses/
%{python_sitelib}/xarray
-%exclude %{python_sitelib}/xarray/tests
-%{python_sitelib}/xarray-%{version}*-info
+%{python_sitelib}/xarray-%{version}.dist-info
++++++ local_dataset.patch ++++++
--- /var/tmp/diff_new_pack.QIcdDa/_old 2023-09-13 20:48:00.501444740 +0200
+++ /var/tmp/diff_new_pack.QIcdDa/_new 2023-09-13 20:48:00.501444740 +0200
@@ -2,9 +2,11 @@
xarray/tutorial.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
---- a/xarray/tutorial.py
-+++ b/xarray/tutorial.py
-@@ -156,7 +156,10 @@ def open_dataset(
+Index: xarray-2023.8.0/xarray/tutorial.py
+===================================================================
+--- xarray-2023.8.0.orig/xarray/tutorial.py
++++ xarray-2023.8.0/xarray/tutorial.py
+@@ -157,7 +157,10 @@ def open_dataset(
url = f"{base_url}/raw/{version}/{path.name}"
# retrieve the file
++++++ xarray-2023.5.0.tar.gz -> xarray-2023.8.0.tar.gz ++++++
++++ 13345 lines of diff (skipped)
++++++ xarray-pr8139-pandas-fill_value.patch ++++++
>From 3e48312c41cb26bbd4dc83ae286444f1469b7aa2 Mon Sep 17 00:00:00 2001
From: Maximilian Roos <m...@maxroos.com>
Date: Fri, 1 Sep 2023 19:41:41 -0700
Subject: [PATCH] Fix pandas interpolate(fill_value=) error
Pandas no longer has a `fill_value` parameter for `interpolate`.
Weirdly I wasn't getting this locally, on pandas 2.1.0, only in CI on
https://github.com/pydata/xarray/actions/runs/6054400455/job/16431747966?pr=8138.
Removing it passes locally, let's see whether this works in CI
---
xarray/tests/test_missing.py | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/xarray/tests/test_missing.py b/xarray/tests/test_missing.py
index a6b6b1f80c..c303659116 100644
--- a/xarray/tests/test_missing.py
+++ b/xarray/tests/test_missing.py
@@ -104,7 +104,8 @@ def test_interpolate_pd_compat():
for dim in ["time", "x"]:
actual = da.interpolate_na(method=method, dim=dim,
fill_value=np.nan)
expected = df.interpolate(
- method=method, axis=da.get_axis_num(dim), fill_value=(np.nan,
np.nan)
+ method=method,
+ axis=da.get_axis_num(dim),
)
# Note, Pandas does some odd things with the left/right fill_value
# for the linear methods. This next line inforces the xarray
@@ -140,7 +141,8 @@ def test_interpolate_pd_compat_non_uniform_index():
method="linear", dim=dim, use_coordinate=True,
fill_value=np.nan
)
expected = df.interpolate(
- method=method, axis=da.get_axis_num(dim), fill_value=np.nan
+ method=method,
+ axis=da.get_axis_num(dim),
)
# Note, Pandas does some odd things with the left/right fill_value
