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here is the log from the commit of package python-nibabel for openSUSE:Factory
checked in at 2024-02-18 20:23:20
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-nibabel (Old)
and /work/SRC/openSUSE:Factory/.python-nibabel.new.1815 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-nibabel"
Sun Feb 18 20:23:20 2024 rev:10 rq:1147160 version:5.2.0
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-nibabel/python-nibabel.changes
2022-10-11 18:05:24.754071495 +0200
+++ /work/SRC/openSUSE:Factory/.python-nibabel.new.1815/python-nibabel.changes
2024-02-18 20:23:36.754969931 +0100
@@ -1,0 +2,77 @@
+Thu Feb 15 16:13:37 UTC 2024 - Ben Greiner <c...@bnavigator.de>
+
+- Update to 5.2.0
+ ## New features
+ * Add generic Pointset and regularly spaced Grid data structures
+ in preparation for coordinate transformation and resampling
+ (#1251) (CM, reviewed by Oscar Esteban)
+ ## Enhancements
+ * Add copy method to ArrayProxy (#1255) (CM, reviewed by Paul
+ McCarthy)
+ * Permit to_xml to pass keyword arguments to tostring (#1258)
+ (CM)
+ * Allow user expansion (e.g., ~/...) in strings passed to
+ functions that accept paths (#1260) (Reinder Vos de Wael,
+ reviewed by CM)
+ * Expand CIFTI-2 brain structures to permit synonyms (#1256) (CM,
+ reviewed by Mathias Goncalves)
+ * Annotate SpatialImage as accepting affine=None argument (#1253)
+ (Blake Dewey, reviewed by CM)
+ * Warn on invalid MINC2 spacing declarations, treat as missing
+ (#1237) (Peter Suter, reviewed by CM)
+ * Refactor find_private_section for improved readability and
+ maintainability (#1228) (MB, reviewed by CM)
+ ## API changes and deprecations
+ * The nibabel.pydicom_compat module is deprecated and will be
+ removed in NiBabel 7.0. (#1280)
+ * The int_to_float and as_int functions are no longer needed to
+ work around NumPy deficiencies and have been deprecated (#1272)
+ (CM, reviewed by EL)
+- Release 5.1
+ ## Enhancements
+ * Make imagestats available with import nibabel (pr/1208) (Fabian
+ Perez, reviewed by CM)
+ * Use symmetric threshold for identifying unit quaternions on
+ qform calculations (pr/1182) (CM, reviewed by MB)
+ * Type annotations for nibabel.loadsave (pr/1213) and
+ nibabel.spatialimages.SpatialImage APIs (pr/1179),
+ nibabel.deprecated, nibabel.deprecator, nibabel.onetime and
+ nibabel.optpkg modules (pr/1188), nibabel.volumeutils
+ (pr/1189), nibabel.filename_parser and nibabel.openers
+ (pr/1197) (CM, reviewed by Zvi Baratz)
+- Release 5.0
+ ## New features
+ * SerializableImage now has to_stream() and from_stream() methods
+ to read/write streams implementing the io.IOBase interface. A
+ from_url() method enables loading images from URLs. (pr/1129)
+ (CM, reviewed by MB)
+ * TrkFile supports TRKv3, an undocumented but generally
+ compatible variant of TRKv2. (pr/1125) (CM)
+ ## Enhancements
+ * Support multiline header fields in TCKFile (pr/1175) (CM,
+ reviewed by Matt Cieslak)
+ * Make layout order an initialization parameter of ArrayProxy
+ (pr/1131) (CM, reviewed by MB)
+ * Initial support for type annotations. (pr/1115, pr/1178) (CM,
+ reviewed by Zvi Baratz)
+ ## API changes and deprecations
+ * Passing an int64 array to Nifti1Image without a header or dtype
+ argument will raise a ValueError. (pr/1173) (CM)
+ * tmpdirs.TemporaryDirectory is deprecated in favor of
+ tempfile.TemporaryDirectory. (pr/1172) (CM, reviewed by Zvi
+ Baratz)
+ * The nisext package is deprecated and will be removed in NiBabel
+ 6.0. (pr/1170) (CM, reviewed by MB)
+ * Drop support for Python 3.7, Numpy < 1.19 (pr/1177) (CM)
+ * The following deprecated functions and methods will now raise
+ ExpiredDeprecationErrors
+ - nibabel.loadsave.read_img_data
+ - nibabel.dataobj_images.DataobjImage.get_data
+ - nibabel.loadsave.guessed_image_type
+ - nibabel.onetime.setattr_on_read
+ - nibabel.orientations.flip_axis
+ * Modules, classes and functions that expired at 4.0 were fully
+ removed. ExpiredDeprecationError will now be
+ AttributeError.
+
+-------------------------------------------------------------------
Old:
----
nibabel-4.0.2.tar.gz
New:
----
nibabel-5.2.0.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-nibabel.spec ++++++
--- /var/tmp/diff_new_pack.GcCsrV/_old 2024-02-18 20:23:37.334990862 +0100
+++ /var/tmp/diff_new_pack.GcCsrV/_new 2024-02-18 20:23:37.338991007 +0100
@@ -1,7 +1,7 @@
#
# spec file for package python-nibabel
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,35 +16,45 @@
#
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
-%define skip_python2 1
-%define skip_python36 1
%define binaries nib-conform nib-convert nib-dicomfs nib-diff nib-ls
nib-nifti-dx nib-roi nib-stats nib-tck2trk nib-trk2tck parrec2nii
Name: python-nibabel
-Version: 4.0.2
+Version: 5.2.0
Release: 0
Summary: Tool to access multiple neuroimaging data formats
License: MIT
URL: https://nipy.org/nibabel
+# SourceRepository: https://github.com/nipy/nibabel
Source:
https://files.pythonhosted.org/packages/source/n/nibabel/nibabel-%{version}.tar.gz
-BuildRequires: %{python_module setuptools >= 30.3.0}
-BuildRequires: %{pythons}
+BuildRequires: %{python_module base >= 3.8}
+BuildRequires: %{python_module hatch-vcs}
+BuildRequires: %{python_module hatchling}
+BuildRequires: %{python_module pip}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
-Requires: python-numpy >= 1.17
+Requires: python-numpy >= 1.20
+Requires: python-packaging => 17
+Requires: (python-importlib-resources >= 1.3 if python-base < 3.9)
Requires(post): update-alternatives
-Requires(postun):update-alternatives
+Requires(postun): update-alternatives
Recommends: python-Pillow
-Recommends: python-dicom >= 0.9.9
Recommends: python-h5py
+Recommends: python-pydicom >= 1
Recommends: python-scipy
BuildArch: noarch
# SECTION test requirements
BuildRequires: %{python_module Pillow}
BuildRequires: %{python_module h5py}
-BuildRequires: %{python_module numpy >= 1.17}
+BuildRequires: %{python_module importlib-resources >= 1.3 if %python-base <
3.9}
+BuildRequires: %{python_module numpy >= 1.20}
+BuildRequires: %{python_module packaging >= 17}
+BuildRequires: %{python_module pydicom >= 1}
+BuildRequires: %{python_module pytest-doctestplus}
+BuildRequires: %{python_module pytest-httpserver}
+BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module scipy}
+BuildRequires: %{pythons}
+BuildRequires: git-core
# /SECTION
%python_subpackages
@@ -58,43 +68,35 @@
%prep
%setup -q -n nibabel-%{version}
+find nibabel -name .gitignore -delete
+sed -i '1{/^!#/d}' nibabel/cmdline/*.py
+chmod a-x nibabel/cmdline/*.py
+chmod a-x nibabel/tests/data/umass_anonymized.PAR
nibabel/gifti/tests/data/gzipbase64.gii nibabel/nicom/dicomwrappers.py
nibabel/nicom/tests/test_dicomwrappers.py
%build
-%python_build
+%pyproject_wheel
%install
-%python_install
+%pyproject_install
for b in %{binaries}; do
%python_clone -a %{buildroot}%{_bindir}/$b
done
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
-%pytest
+%pytest -n auto -rsfE
%post
-for b in %{binaries}; do
- %python_install_alternative $b
-done
+%{expand:%(for b in %{binaries}; do echo "%%python_install_alternative $b";
done)}
%postun
-for b in %{binaries}; do
- %python_uninstall_alternative $b
-done
+%{expand:%(for b in %{binaries}; do echo "%%python_uninstall_alternative $b";
done)}
%files %{python_files}
%doc AUTHOR Changelog README.rst
%license COPYING
-%python_alternative %{_bindir}/nib-conform
-%python_alternative %{_bindir}/nib-convert
-%python_alternative %{_bindir}/nib-dicomfs
-%python_alternative %{_bindir}/nib-diff
-%python_alternative %{_bindir}/nib-ls
-%python_alternative %{_bindir}/nib-nifti-dx
-%python_alternative %{_bindir}/nib-roi
-%python_alternative %{_bindir}/nib-stats
-%python_alternative %{_bindir}/nib-tck2trk
-%python_alternative %{_bindir}/nib-trk2tck
-%python_alternative %{_bindir}/parrec2nii
-%{python_sitelib}/*
+%{expand:%(for b in %{binaries}; do echo "%%python_alternative
%%{_bindir}/$b"; done)}
+%{python_sitelib}/nibabel
+%{python_sitelib}/nisext
+%{python_sitelib}/nibabel-%{version}.dist-info
++++++ nibabel-4.0.2.tar.gz -> nibabel-5.2.0.tar.gz ++++++
++++ 56488 lines of diff (skipped)
