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Hello community,
here is the log from the commit of package o2scl for openSUSE:Factory checked
in at 2024-07-22 17:18:26
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/o2scl (Old)
and /work/SRC/openSUSE:Factory/.o2scl.new.17339 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "o2scl"
Mon Jul 22 17:18:26 2024 rev:16 rq:1188890 version:0.929.1
Changes:
--------
--- /work/SRC/openSUSE:Factory/o2scl/o2scl.changes 2022-08-15
20:00:36.357459239 +0200
+++ /work/SRC/openSUSE:Factory/.o2scl.new.17339/o2scl.changes 2024-07-22
17:20:10.574503428 +0200
@@ -1,0 +2,62 @@
+Sun Jul 14 05:54:59 UTC 2024 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Update to version 0.929.1:
+ * Small fixes to address some security updates and problems on
+ 32-bit systems.
+
+-------------------------------------------------------------------
+Thu May 9 20:30:02 UTC 2024 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Update to version 0.929:
+ * Created example ex_mcmc_kde.cpp.
+ * Created new steppers for mcmc_para.
+ * Improved Python, multiprecision, MPFR support in several
+ classes.
+ * Updated classes and methods inte_kronrod_boost,
+ cli::xml_to_o2(), eos_leptons, eos_leptons_multip,
+ inte_double_exp_boost, ode_boost, fermion_deriv_rel,
+ inte_gauss_cern, inte_adapt_cern, astep_boost, boson_rel,
+ calc_utf8, funct_multip, eos_sn, lib_settings, fermi_function,
+ and boson_thermo.
+ * Allowed for virtual environments in py_init()
+ * Updates to acol commands: table rename, table3d refine, table
+ cat, table3d contours, table autocorr, table thin-mcmc.
+ * Updated acol function support.
+ * Updated yanic.
+ * Created a new O2SCL_NO_BOOST_MULTIPRECISION ifdef for speed.
+- Drop patches:
+ * o2scl-disable-slow-hdf-test.patch: No longer needed as we
+ disable slow running tests by passing `-DO2SCL_FAST_TEST` to
+ CXXFLAGS instead.
+ * o2scl-link-quadmath.patch: fixed upstream.
+- Split off tests into separate multibuild flavour to avoid main
+ library builds getting bogged down by long running tests and
+ also to turn off python support for the test flavour to avoid
+ running python based tests. This prevents a circular dependency
+ between python-o2sclpy and o2scl.
+- Build with ncurses support; add BuildRequires:
+ pkgconfig(ncurses).
+- Switch a few *-devel BuildRequires to pkgconfig based ones.
+- Account for openSUSE Leap having hdf5 < 1.12 by passing
+ `-DO2SCL_HDF5_PRE_1_12` to CXXFLAGS.
+- Add o2scl.rpmlintrc to mask warnings for empty files installed
+ as part of doc package.
+- Pass `-lgomp` to linker flags to avoid undefined symbol:
+ GOMP_critical_name_end when using python o2sclpy
+ (gh#awsteiner/o2scl#40).
+- Update URL tag to new upstream home page.
+- Disable pugixml: not for end-users (gh#awsteiner/o2scl#38).
+
+-------------------------------------------------------------------
+Thu Jul 27 10:44:01 UTC 2023 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Update to version 0.928:
+- doc package is now noarch.
+- Use memory_constraints to allow at least 2GB memory per thread.
+- Add _constraints.
+- Drop test related patches that have been fixed upstream:
+ * o2scl-eos_quark_cfl6-test-increase-tol.patch
+ * o2scl-disable-test-without-destdir-support.patch
+ * o2scl-failing-tests-increase-tol.patch
+
+-------------------------------------------------------------------
Old:
----
o2scl-0.926.tar.gz
o2scl-disable-slow-hdf-test.patch
o2scl-disable-test-without-destdir-support.patch
o2scl-eos_quark_cfl6-test-increase-tol.patch
o2scl-failing-tests-increase-tol.patch
New:
----
_constraints
_multibuild
o2scl-0.929.1.tar.gz
o2scl.rpmlintrc
BETA DEBUG BEGIN:
Old:- Drop patches:
* o2scl-disable-slow-hdf-test.patch: No longer needed as we
disable slow running tests by passing `-DO2SCL_FAST_TEST` to
Old: * o2scl-eos_quark_cfl6-test-increase-tol.patch
* o2scl-disable-test-without-destdir-support.patch
* o2scl-failing-tests-increase-tol.patch
Old:- Drop test related patches that have been fixed upstream:
* o2scl-eos_quark_cfl6-test-increase-tol.patch
* o2scl-disable-test-without-destdir-support.patch
Old: * o2scl-disable-test-without-destdir-support.patch
* o2scl-failing-tests-increase-tol.patch
BETA DEBUG END:
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ o2scl.spec ++++++
--- /var/tmp/diff_new_pack.OqeR01/_old 2024-07-22 17:20:11.310533015 +0200
+++ /var/tmp/diff_new_pack.OqeR01/_new 2024-07-22 17:20:11.310533015 +0200
@@ -1,7 +1,7 @@
#
-# spec file for package o2scl
+# spec file
#
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -16,39 +16,53 @@
#
-%define shlib lib%{name}0
-Name: o2scl
-Version: 0.926
+%global flavor @BUILD_FLAVOR@%{nil}
+%if "%{flavor}" == "test"
+%bcond_without test
+%define psuffix -test
+# Python binding tests do not work in the chroot env
+%bcond_with python3
+# Tests for non-x86_64 fail due to tolerance issues in the tests
gh#awsteiner/o2scl#39, gh#awsteiner/o2scl#41
+ExclusiveArch: x86_64
+%else
+%bcond_with test
+%bcond_without python3
+%define psuffix %{nil}
+%endif
+%define pname o2scl
+%define shlib lib%{pname}0
+Name: %{pname}%{?psuffix}
+Version: 0.929.1
Release: 0
Summary: Object-oriented Scientific Computing Library
License: GPL-3.0-only
Group: Productivity/Scientific/Math
-URL: https://neutronstars.utk.edu/code/o2scl/html/index.html
-Source:
https://github.com/awsteiner/o2scl/releases/download/v%{version}/%{name}-%{version}.tar.gz
-# PATCH-FEATURE-OPENSUSE o2scl-disable-slow-hdf-test.patch
badshah...@gmail.com -- Disable an hdf5 test that takes too long causing OBS
workers to time out and build to fail
-Patch0: o2scl-disable-slow-hdf-test.patch
-# PATCH-FEATURE-OPENSUSE o2scl-disable-test-without-destdir-support.patch
badshah...@gmail.com -- Disable tests that use data files installed to datadir
but does not support DESTDIR and therefore cannot be run in a buildroot env
-Patch1: o2scl-disable-test-without-destdir-support.patch
-# PATCH-FIX-UPSTREAM o2scl-eos_quark_cfl6-test-increase-tol.patch
gh#awsteiner/o2scl#18 badshah...@gmail.com -- Increase the tolerance of a test
that fails due to minor tolerance issues on x86_64
-Patch2: o2scl-eos_quark_cfl6-test-increase-tol.patch
-# PATCH-FIX-UPSTREAM o2scl-failing-tests-increase-tol.patch
badshah...@gmail.com -- Minor increases in tolerance for a few more failing
tests
-Patch3: o2scl-failing-tests-increase-tol.patch
-BuildRequires: armadillo-devel
-BuildRequires: eigen3-devel
+URL: https://awsteiner.org/code/o2scl
+Source0:
https://github.com/awsteiner/o2scl/releases/download/v%{version}/%{pname}-%{version}.tar.gz
+Source1: %{pname}.rpmlintrc
BuildRequires: fdupes
BuildRequires: gcc-c++
BuildRequires: hdf5-devel
# Required For Patch0
BuildRequires: libtool
-%if 0%{?suse_version} > 1320
-BuildRequires: libboost_headers-devel
-%else
-BuildRequires: boost-devel
-%endif
+BuildRequires: libboost_headers-devel >= 1.80
+BuildRequires: memory-constraints
BuildRequires: pkgconfig
-BuildRequires: readline-devel
+BuildRequires: pkgconfig(armadillo)
+BuildRequires: pkgconfig(eigen3)
+BuildRequires: pkgconfig(fftw3)
BuildRequires: pkgconfig(gsl)
-Recommends: %{name}-doc = %{version}
+BuildRequires: pkgconfig(mpfr)
+BuildRequires: pkgconfig(ncurses)
+%if %{with test}
+BuildRequires: %{pname}-devel = %{version}
+%endif
+%if %{with python3}
+BuildRequires: python3-devel
+BuildRequires: python3-numpy-devel
+BuildRequires: readline-devel
+%endif
+Recommends: %{pname}-doc = %{version}
%description
O2scl is a C++ library for object-oriented numerical programming. It
@@ -68,47 +82,67 @@
This package provides the shared libraries for %{name}.
-%package devel
+%package -n %{pname}-devel
Summary: Source and header files for O2scl
Group: Development/Libraries/C and C++
Requires: %{shlib} = %{version}
Requires: armadillo-devel
+Requires: cblas-devel
Requires: eigen3-devel
Requires: gcc-c++
Requires: hdf5-devel
Requires: readline-devel
+Requires: pkgconfig(fftw3)
Requires: pkgconfig(gsl)
+Requires: pkgconfig(mpfr)
-%description devel
+%description -n %{pname}-devel
O2scl is a C++ library for object-oriented numerical programming.
This package provides the source and header files for writing software
using %{name}.
-%package doc
+%package -n %{pname}-doc
Summary: Documentation for %{name}
Group: Documentation/HTML
+BuildArch: noarch
-%description doc
+%description -n %{pname}-doc
O2scl is a C++ library for object-oriented numerical programming.
This package provides the documentation for %{name}.
%prep
-%autosetup -p1
+%autosetup -p1 -n %{pname}-0.929
+cp %{SOURCE1} doc/o2scl/
+sed -Ei "s/\r$/\n/g" doc/o2scl/html/_static/evan.eml
%build
autoreconf -fvi
-export CXXFLAGS+=" -DO2SCL_PLAIN_HDF5_HEADER"
-%configure \
-%if 0%{?suse_version} >= 1500
- --enable-gsl2 \
+%limit_build -m 2500
+# -DO2SCL_FAST_TEST due to https://github.com/awsteiner/o2scl/issues/37
+export CXXFLAGS+="-DO2SCL_PLAIN_HDF5_HEADER %{?with_test:-DO2SCL_FAST_TEST}
%{?with_python3:-I%{python3_sitearch}/numpy/core/include}"
+# Leap 15.X has hdf5 1.10.X
+%if 0%{?suse_version} < 1650
+export CXXFLAGS+=" -DO2SCL_HDF5_PRE_1_12"
%endif
+# Needed to avoid "undefined symbol: GOMP_critical_name_end" when using
o2sclpy from python
+# https://github.com/awsteiner/o2scl/issues/40
+export LDFLAGS+="-lgomp"
+%configure \
+ --enable-armadillo \
--enable-eigen \
- --disable-static
+ --enable-fftw \
+ --enable-openmp \
+ --enable-ncurses \
+ --disable-pugixml \
+ %{?with_python3:--enable-python} \
+ %{!?with_python3:--disable-python} \
+ %{nil}
%make_build
%install
+%if %{without test}
%make_install
mkdir -p %{buildroot}%{_docdir}/%{name}
mv %{buildroot}%{_datadir}/doc/o2scl/* %{buildroot}%{_docdir}/%{name}/
@@ -123,20 +157,14 @@
find %{buildroot}%{_libdir} "(" -name "*.a" -o -name "*.la" ")" -delete -print
%fdupes %{buildroot}%{_docdir}/%{name}/
+%fdupes %{buildroot}%{_datadir}/%{name}/
-# Tests fail on i586/arm*/aarch64/ppc* due to tolerances in the test codes
being set too low. Enable only for x86_64 until fixed
-%ifarch x86_64
-%check
-%make_build check
-%endif
-
-%post -n %{shlib} -p /sbin/ldconfig
-%postun -n %{shlib} -p /sbin/ldconfig
+%ldconfig_scriptlets -n %{shlib}
%files -n %{shlib}
%{_libdir}/*.so.*
-%files devel
+%files -n %{pname}-devel
%doc AUTHORS ChangeLog README NEWS
%license COPYING
%{_bindir}/acol
@@ -146,6 +174,13 @@
%{_libdir}/*.so
%{_includedir}/o2scl/
-%files doc
+%files -n %{pname}-doc
%doc %{_docdir}/%{name}/
+%else
+
+%check
+%make_build check
+
+%endif
+
++++++ _constraints ++++++
<constraints>
<hardware>
<memory>
<size unit="G">4</size>
</memory>
</hardware>
</constraints>
++++++ _multibuild ++++++
<multibuild>
<package>test</package>
</multibuild>
++++++ o2scl-0.926.tar.gz -> o2scl-0.929.1.tar.gz ++++++
/work/SRC/openSUSE:Factory/o2scl/o2scl-0.926.tar.gz
/work/SRC/openSUSE:Factory/.o2scl.new.17339/o2scl-0.929.1.tar.gz differ: char
5, line 1
++++++ o2scl.rpmlintrc ++++++
# There are some blank files in the documentation that must not be deleted
addFilter("o2scl-doc.noarch: E: zero-length")
