http://git-wip-us.apache.org/repos/asf/airavata/blob/6e5e336f/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreator.java
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diff --git
a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreator.java
b/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreator.java
deleted file mode 100644
index a2be524..0000000
---
a/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreator.java
+++ /dev/null
@@ -1,898 +0,0 @@
-///*
-// *
-// * Licensed to the Apache Software Foundation (ASF) under one
-// * or more contributor license agreements. See the NOTICE file
-// * distributed with this work for additional information
-// * regarding copyright ownership. The ASF licenses this file
-// * to you under the Apache License, Version 2.0 (the
-// * "License"); you may not use this file except in compliance
-// * with the License. You may obtain a copy of the License at
-// *
-// * http://www.apache.org/licenses/LICENSE-2.0
-// *
-// * Unless required by applicable law or agreed to in writing,
-// * software distributed under the License is distributed on an
-// * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-// * KIND, either express or implied. See the License for the
-// * specific language governing permissions and limitations
-// * under the License.
-// *
-//*/
-//package org.apache.airavata.client.tools;
-//
-//import java.io.File;
-//import java.util.ArrayList;
-//import java.util.Date;
-//import java.util.List;
-//import java.util.UUID;
-//
-//import org.apache.airavata.client.api.AiravataAPI;
-//import
org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
-//import org.apache.airavata.commons.gfac.type.ApplicationDescription;
-//import org.apache.airavata.commons.gfac.type.HostDescription;
-//import org.apache.airavata.commons.gfac.type.ServiceDescription;
-//import org.apache.airavata.schemas.gfac.*;
-//
-//public class DocumentCreator {
-//
-// private AiravataAPI airavataAPI = null;
-// private String trestleshpcHostAddress = "trestles.sdsc.edu";
-// private String lonestarHostAddress = "lonestar.tacc.utexas.edu";
-// private String stampedeHostAddress = "stampede.tacc.xsede.org";
-// private String gridftpAddress = "gsiftp://trestles-dm1.sdsc.edu:2811";;
-// private String gramAddress =
"trestles-login1.sdsc.edu:2119/jobmanager-pbstest2";
-// private String bigRed2HostAddress = "bigred2.uits.iu.edu";
-//
-//
-// public DocumentCreator(AiravataAPI airavataAPI) {
-// this.airavataAPI = airavataAPI;
-// }
-//
-// public void createLocalHostDocs() {
-// HostDescription descriptor = new HostDescription();
-// descriptor.getType().setHostName("localhost");
-// descriptor.getType().setHostAddress("127.0.0.1");
-// try {
-//
airavataAPI.getApplicationManager().saveHostDescription(descriptor);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// String serviceName = "SimpleEcho0";
-// ServiceDescription serviceDescription = new ServiceDescription();
-// List<InputParameterType> inputParameters = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputParameters = new
ArrayList<OutputParameterType>();
-// serviceDescription.getType().setName(serviceName);
-// serviceDescription.getType().setDescription("Echo service");
-// // Creating input parameters
-// InputParameterType parameter =
InputParameterType.Factory.newInstance();
-// parameter.setParameterName("echo_input");
-// parameter.setParameterDescription("echo input");
-// ParameterType parameterType = parameter.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-// inputParameters.add(parameter);
-//
-// // Creating output parameters
-// OutputParameterType outputParameter =
OutputParameterType.Factory.newInstance();
-// outputParameter.setParameterName("echo_output");
-// outputParameter.setParameterDescription("Echo output");
-// ParameterType outputParaType = outputParameter.addNewParameterType();
-// outputParaType.setType(DataType.STRING);
-// outputParaType.setName("String");
-// outputParameters.add(outputParameter);
-//
-// // Setting input and output parameters to serviceDescriptor
-//
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new
InputParameterType[]{}));
-//
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new
OutputParameterType[]{}));
-//
-// try {
-//
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// ApplicationDescription applicationDeploymentDescription = new
ApplicationDescription();
-// ApplicationDeploymentDescriptionType
applicationDeploymentDescriptionType = applicationDeploymentDescription
-// .getType();
-//
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue("EchoApplication");
-//
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
-//
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
"localhost", applicationDeploymentDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// }
-//
-//
-// public void createSSHHostDocs() {
-// HostDescription descriptor = new HostDescription(SSHHostType.type);
-// descriptor.getType().setHostName("gw111.iu.xsede.org");
-// descriptor.getType().setHostAddress("gw111.iu.xsede.org");
-// try {
-//
airavataAPI.getApplicationManager().saveHostDescription(descriptor);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// String serviceName = "SSHEcho1";
-// ServiceDescription serviceDescription = new ServiceDescription();
-// List<InputParameterType> inputParameters = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputParameters = new
ArrayList<OutputParameterType>();
-// serviceDescription.getType().setName(serviceName);
-// serviceDescription.getType().setDescription("Echo service");
-// // Creating input parameters
-// InputParameterType parameter =
InputParameterType.Factory.newInstance();
-// parameter.setParameterName("echo_input");
-// parameter.setParameterDescription("echo input");
-// ParameterType parameterType = parameter.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-// inputParameters.add(parameter);
-//
-// // Creating output parameters
-// OutputParameterType outputParameter =
OutputParameterType.Factory.newInstance();
-// outputParameter.setParameterName("echo_output");
-// outputParameter.setParameterDescription("Echo output");
-// ParameterType outputParaType = outputParameter.addNewParameterType();
-// outputParaType.setType(DataType.STRING);
-// outputParaType.setName("String");
-// outputParameters.add(outputParameter);
-//
-// // Setting input and output parameters to serviceDescriptor
-//
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new
InputParameterType[]{}));
-//
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new
OutputParameterType[]{}));
-//
-// try {
-//
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// ApplicationDescription applicationDeploymentDescription = new
ApplicationDescription();
-// ApplicationDeploymentDescriptionType
applicationDeploymentDescriptionType = applicationDeploymentDescription
-// .getType();
-//
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue("SSHEchoApplication");
-//
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
-//
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
"gw111.iu.xsede.org", applicationDeploymentDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// }
-//
-// public void createGramDocs() {
-// /*
-// creating host descriptor for gram
-// */
-// HostDescription host = new HostDescription(GlobusHostType.type);
-// host.getType().setHostAddress(trestleshpcHostAddress);
-// host.getType().setHostName(trestleshpcHostAddress);
-// ((GlobusHostType)
host.getType()).setGlobusGateKeeperEndPointArray(new String[]{gramAddress});
-// ((GlobusHostType) host.getType()).setGridFTPEndPointArray(new
String[]{gridftpAddress});
-// try {
-// airavataAPI.getApplicationManager().saveHostDescription(host);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-//
-// /*
-// * Service Description creation and saving
-// */
-// String serviceName = "SimpleEcho1";
-// ServiceDescription serv = new ServiceDescription();
-// serv.getType().setName(serviceName);
-//
-// List<InputParameterType> inputList = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputList = new
ArrayList<OutputParameterType>();
-//
-// InputParameterType input = InputParameterType.Factory.newInstance();
-// input.setParameterName("echo_input");
-// ParameterType parameterType = input.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-//
-// OutputParameterType output =
OutputParameterType.Factory.newInstance();
-// output.setParameterName("echo_output");
-// ParameterType parameterType1 = output.addNewParameterType();
-// parameterType1.setType(DataType.STRING);
-// parameterType1.setName("String");
-//
-// inputList.add(input);
-// outputList.add(output);
-//
-// InputParameterType[] inputParamList = inputList.toArray(new
InputParameterType[inputList.size()]);
-// OutputParameterType[] outputParamList = outputList.toArray(new
OutputParameterType[outputList.size()]);
-//
-// serv.getType().setInputParametersArray(inputParamList);
-// serv.getType().setOutputParametersArray(outputParamList);
-// try {
-// airavataAPI.getApplicationManager().saveServiceDescription(serv);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace();
-// }
-//
-// /*
-// Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)
appDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue("EchoLocal");
-// app.setApplicationName(name);
-// ProjectAccountType projectAccountType = app.addNewProjectAccount();
-// projectAccountType.setProjectAccountNumber("sds128");
-//
-// QueueType queueType = app.addNewQueue();
-// queueType.setQueueName("normal");
-//
-// app.setCpuCount(1);
-// app.setJobType(JobTypeType.SERIAL);
-// app.setNodeCount(1);
-// app.setProcessorsPerNode(1);
-//
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/home/ogce/scratch";
-// app.setScratchWorkingDirectory(tempDir);
-// app.setMaxMemory(10);
-//
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
trestleshpcHostAddress, appDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// }
-//
-// public void createPBSDocsForOGCE() {
-// HostDescription host = new HostDescription(GsisshHostType.type);
-// host.getType().setHostAddress(trestleshpcHostAddress);
-// host.getType().setHostName(trestleshpcHostAddress);
-// ((GsisshHostType) host.getType()).setPort(22);
-// ((GsisshHostType)
host.getType()).setInstalledPath("/opt/torque/bin/");
-//
-// try {
-// airavataAPI.getApplicationManager().saveHostDescription(host);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// /*
-// * Service Description creation and saving
-// */
-// String serviceName = "SimpleEcho2";
-// ServiceDescription serv = new ServiceDescription();
-// serv.getType().setName(serviceName);
-//
-// List<InputParameterType> inputList = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputList = new
ArrayList<OutputParameterType>();
-//
-//
-// InputParameterType input = InputParameterType.Factory.newInstance();
-// input.setParameterName("echo_input");
-// ParameterType parameterType = input.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-//
-// OutputParameterType output =
OutputParameterType.Factory.newInstance();
-// output.setParameterName("echo_output");
-// ParameterType parameterType1 = output.addNewParameterType();
-// parameterType1.setType(DataType.STRING);
-// parameterType1.setName("String");
-//
-// inputList.add(input);
-// outputList.add(output);
-//
-// InputParameterType[] inputParamList = inputList.toArray(new
InputParameterType[inputList.size()]);
-// OutputParameterType[] outputParamList = outputList.toArray(new
OutputParameterType[outputList.size()]);
-//
-// serv.getType().setInputParametersArray(inputParamList);
-// serv.getType().setOutputParametersArray(outputParamList);
-// try {
-// airavataAPI.getApplicationManager().saveServiceDescription(serv);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// /*
-// Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)
appDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue("EchoLocal");
-// app.setApplicationName(name);
-// ProjectAccountType projectAccountType = app.addNewProjectAccount();
-// projectAccountType.setProjectAccountNumber("sds128");
-//
-// QueueType queueType = app.addNewQueue();
-// queueType.setQueueName("normal");
-//
-// app.setCpuCount(1);
-// app.setJobType(JobTypeType.SERIAL);
-// app.setNodeCount(1);
-// app.setProcessorsPerNode(1);
-// app.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/oasis/scratch/trestles/ogce/temp_project/";
-//
-//
-// app.setScratchWorkingDirectory(tempDir);
-// app.setInstalledParentPath("/opt/torque/bin/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
trestleshpcHostAddress, appDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// /*
-// * Service Description creation and saving
-// */
-// String wrfserviceName = "WRF";
-// ServiceDescription wrfServ = new ServiceDescription();
-// wrfServ.getType().setName(wrfserviceName);
-//
-// List<InputParameterType> wrfinputList = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> wrfoutputList = new
ArrayList<OutputParameterType>();
-//
-//
-// InputParameterType wrfinput1 =
InputParameterType.Factory.newInstance();
-// wrfinput1.setParameterName("WRF_Namelist");
-// ParameterType wrfparameterType1 = wrfinput1.addNewParameterType();
-// wrfparameterType1.setType(DataType.URI);
-// wrfparameterType1.setName("URI");
-//
-// InputParameterType wrfinput2 =
InputParameterType.Factory.newInstance();
-// wrfinput2.setParameterName("WRF_Input_File");
-// ParameterType wrfparameterType2 = wrfinput2.addNewParameterType();
-// wrfparameterType2.setType(DataType.URI);
-// wrfparameterType2.setName("URI");
-//
-// InputParameterType wrfinput3 =
InputParameterType.Factory.newInstance();
-// wrfinput3.setParameterName("WRF_Boundary_File");
-// ParameterType wrfparameterType3 = wrfinput3.addNewParameterType();
-// wrfparameterType3.setType(DataType.URI);
-// wrfparameterType3.setName("URI");
-//
-// OutputParameterType wrfOutput1 =
OutputParameterType.Factory.newInstance();
-// wrfOutput1.setParameterName("WRF_Output");
-// ParameterType wrfoutparameterType1 =
wrfOutput1.addNewParameterType();
-// wrfoutparameterType1.setType(DataType.URI);
-// wrfoutparameterType1.setName("URI");
-//
-// OutputParameterType wrfOutput2 =
OutputParameterType.Factory.newInstance();
-// wrfOutput2.setParameterName("WRF_Execution_Log");
-// ParameterType wrfoutparameterType2 =
wrfOutput2.addNewParameterType();
-// wrfoutparameterType2.setType(DataType.URI);
-// wrfoutparameterType2.setName("URI");
-//
-// wrfinputList.add(wrfinput1);
-// wrfinputList.add(wrfinput2);
-// wrfinputList.add(wrfinput3);
-// wrfoutputList.add(wrfOutput1);
-// wrfoutputList.add(wrfOutput2);
-//
-// InputParameterType[] wrfinputParamList = wrfinputList.toArray(new
InputParameterType[wrfinputList.size()]);
-// OutputParameterType[] wrfoutputParamList = wrfoutputList.toArray(new
OutputParameterType[wrfoutputList.size()]);
-//
-// wrfServ.getType().setInputParametersArray(wrfinputParamList);
-// wrfServ.getType().setOutputParametersArray(wrfoutputParamList);
-// try {
-//
airavataAPI.getApplicationManager().saveServiceDescription(wrfServ);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// /*
-// Application descriptor creation and saving
-// */
-// ApplicationDescription wrfAppDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType wrfApp = (HpcApplicationDeploymentType)
wrfAppDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName wrfName =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// wrfName.setStringValue("WRF");
-// wrfApp.setApplicationName(wrfName);
-// ProjectAccountType wrfprojectAccountType =
wrfApp.addNewProjectAccount();
-// wrfprojectAccountType.setProjectAccountNumber("sds128");
-//
-// QueueType wrfQueueType = wrfApp.addNewQueue();
-// wrfQueueType.setQueueName("normal");
-//
-// wrfApp.setCpuCount(32);
-// wrfApp.setJobType(JobTypeType.MPI);
-// wrfApp.setNodeCount(2);
-// wrfApp.setProcessorsPerNode(1);
-// wrfApp.setMaxWallTime(30);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// wrfApp.setExecutableLocation("/home/ogce/apps/wrf_wrapper.sh");
-//
-// /*
-// * Default tmp location
-// */
-// String wrfTempDir = "/oasis/scratch/trestles/ogce/temp_project/";
-//
-// wrfApp.setScratchWorkingDirectory(wrfTempDir);
-// wrfApp.setInstalledParentPath("/opt/torque/bin/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(wrfserviceName,
trestleshpcHostAddress, wrfAppDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// }
-//
-//
-// public void createSlurmDocs() {
-// HostDescription host = new HostDescription(GsisshHostType.type);
-// host.getType().setHostAddress(stampedeHostAddress);
-// host.getType().setHostName(stampedeHostAddress);
-// ((GsisshHostType) host.getType()).setJobManager("slurm");
-// ((GsisshHostType) host.getType()).setInstalledPath("/usr/bin/");
-// ((GsisshHostType) host.getType()).setPort(2222);
-// ((GsisshHostType) host.getType()).setMonitorMode("push");
-//
-//
-// try {
-// airavataAPI.getApplicationManager().saveHostDescription(host);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// /*
-// * Service Description creation and saving
-// */
-// String serviceName = "SimpleEcho3";
-// ServiceDescription serv = new ServiceDescription();
-// serv.getType().setName(serviceName);
-//
-// List<InputParameterType> inputList = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputList = new
ArrayList<OutputParameterType>();
-//
-//
-// InputParameterType input = InputParameterType.Factory.newInstance();
-// input.setParameterName("echo_input");
-// ParameterType parameterType = input.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-//
-// OutputParameterType output =
OutputParameterType.Factory.newInstance();
-// output.setParameterName("echo_output");
-// ParameterType parameterType1 = output.addNewParameterType();
-// parameterType1.setType(DataType.STRING);
-// parameterType1.setName("String");
-//
-// inputList.add(input);
-// outputList.add(output);
-//
-// InputParameterType[] inputParamList = inputList.toArray(new
InputParameterType[inputList.size()]);
-// OutputParameterType[] outputParamList = outputList.toArray(new
OutputParameterType[outputList.size()]);
-//
-// serv.getType().setInputParametersArray(inputParamList);
-// serv.getType().setOutputParametersArray(outputParamList);
-// try {
-// airavataAPI.getApplicationManager().saveServiceDescription(serv);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// /*
-// Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)
appDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue("EchoLocal");
-// app.setApplicationName(name);
-// ProjectAccountType projectAccountType = app.addNewProjectAccount();
-// projectAccountType.setProjectAccountNumber("TG-STA110014S");
-//
-// QueueType queueType = app.addNewQueue();
-// queueType.setQueueName("normal");
-//
-// app.setCpuCount(1);
-// app.setJobType(JobTypeType.SERIAL);
-// app.setNodeCount(1);
-// app.setProcessorsPerNode(1);
-// app.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/home1/01437/ogce";
-//
-//
-// app.setScratchWorkingDirectory(tempDir);
-// app.setInstalledParentPath("/usr/bin/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
stampedeHostAddress, appDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// }
-//
-// public void createSGEDocs() {
-// HostDescription host = new HostDescription(GsisshHostType.type);
-// host.getType().setHostAddress(lonestarHostAddress);
-// host.getType().setHostName(lonestarHostAddress);
-// ((GsisshHostType) host.getType()).setJobManager("sge");
-// ((GsisshHostType)
host.getType()).setInstalledPath("/opt/sge6.2/bin/lx24-amd64/");
-// ((GsisshHostType) host.getType()).setPort(22);
-// try {
-// airavataAPI.getApplicationManager().saveHostDescription(host);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// /*
-// * Service Description creation and saving
-// */
-// String serviceName = "SimpleEcho4";
-// ServiceDescription serv = new ServiceDescription();
-// serv.getType().setName(serviceName);
-//
-// List<InputParameterType> inputList = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputList = new
ArrayList<OutputParameterType>();
-//
-//
-// InputParameterType input = InputParameterType.Factory.newInstance();
-// input.setParameterName("echo_input");
-// ParameterType parameterType = input.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-//
-// OutputParameterType output =
OutputParameterType.Factory.newInstance();
-// output.setParameterName("echo_output");
-// ParameterType parameterType1 = output.addNewParameterType();
-// parameterType1.setType(DataType.STRING);
-// parameterType1.setName("String");
-//
-// inputList.add(input);
-// outputList.add(output);
-//
-// InputParameterType[] inputParamList = inputList.toArray(new
InputParameterType[inputList.size()]);
-// OutputParameterType[] outputParamList = outputList.toArray(new
OutputParameterType[outputList.size()]);
-//
-// serv.getType().setInputParametersArray(inputParamList);
-// serv.getType().setOutputParametersArray(outputParamList);
-// try {
-// airavataAPI.getApplicationManager().saveServiceDescription(serv);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-//
-// /*
-// Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)
appDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue("EchoLocal");
-// app.setApplicationName(name);
-// ProjectAccountType projectAccountType = app.addNewProjectAccount();
-// projectAccountType.setProjectAccountNumber("TG-STA110014S");
-//
-// QueueType queueType = app.addNewQueue();
-// queueType.setQueueName("normal");
-//
-// app.setCpuCount(1);
-// app.setJobType(JobTypeType.SERIAL);
-// app.setNodeCount(1);
-// app.setProcessorsPerNode(1);
-// app.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/home1/01437/ogce";
-//
-//
-// app.setScratchWorkingDirectory(tempDir);
-// app.setInstalledParentPath("/opt/sge6.2/bin/lx24-amd64/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
lonestarHostAddress, appDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// }
-//
-// public void createEchoHostDocs() {
-// String serviceName = "Echo";
-// ServiceDescription serviceDescription = new ServiceDescription();
-// List<InputParameterType> inputParameters = new
ArrayList<InputParameterType>();
-// List<OutputParameterType> outputParameters = new
ArrayList<OutputParameterType>();
-// serviceDescription.getType().setName(serviceName);
-// serviceDescription.getType().setDescription("Echo service");
-// // Creating input parameters
-// InputParameterType parameter =
InputParameterType.Factory.newInstance();
-// parameter.setParameterName("echo_input");
-// parameter.setParameterDescription("echo input");
-// ParameterType parameterType = parameter.addNewParameterType();
-// parameterType.setType(DataType.STRING);
-// parameterType.setName("String");
-// inputParameters.add(parameter);
-//
-// // Creating output parameters
-// OutputParameterType outputParameter =
OutputParameterType.Factory.newInstance();
-// outputParameter.setParameterName("echo_output");
-// outputParameter.setParameterDescription("Echo output");
-// ParameterType outputParaType = outputParameter.addNewParameterType();
-// outputParaType.setType(DataType.STRING);
-// outputParaType.setName("String");
-// outputParameters.add(outputParameter);
-//
-// // Setting input and output parameters to serviceDescriptor
-//
serviceDescription.getType().setInputParametersArray(inputParameters.toArray(new
InputParameterType[]{}));
-//
serviceDescription.getType().setOutputParametersArray(outputParameters.toArray(new
OutputParameterType[]{}));
-//
-// try {
-//
airavataAPI.getApplicationManager().saveServiceDescription(serviceDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// // Localhost
-// ApplicationDescription applicationDeploymentDescription = new
ApplicationDescription();
-// ApplicationDeploymentDescriptionType
applicationDeploymentDescriptionType =
applicationDeploymentDescription.getType();
-//
applicationDeploymentDescriptionType.addNewApplicationName().setStringValue(serviceName);
-//
applicationDeploymentDescriptionType.setExecutableLocation("/bin/echo");
-//
applicationDeploymentDescriptionType.setScratchWorkingDirectory("/tmp");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
"localhost", applicationDeploymentDescription);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// // Stampede
-// /*
-// * Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc1 = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app1 = (HpcApplicationDeploymentType)
appDesc1.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue(serviceName);
-// app1.setApplicationName(name);
-// ProjectAccountType projectAccountType = app1.addNewProjectAccount();
-// projectAccountType.setProjectAccountNumber("TG-STA110014S");
-//
-// QueueType queueType = app1.addNewQueue();
-// queueType.setQueueName("normal");
-//
-// app1.setCpuCount(1);
-// app1.setJobType(JobTypeType.SERIAL);
-// app1.setNodeCount(1);
-// app1.setProcessorsPerNode(1);
-// app1.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app1.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/home1/01437/ogce";
-//
-// app1.setScratchWorkingDirectory(tempDir);
-// app1.setInstalledParentPath("/usr/bin/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
stampedeHostAddress, appDesc1);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// // Trestles
-// /*
-// * Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc2 = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app2 = (HpcApplicationDeploymentType)
appDesc2.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name2 =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name2.setStringValue(serviceName);
-// app2.setApplicationName(name);
-// ProjectAccountType projectAccountType2 = app2.addNewProjectAccount();
-// projectAccountType2.setProjectAccountNumber("sds128");
-//
-// QueueType queueType2 = app2.addNewQueue();
-// queueType2.setQueueName("normal");
-//
-// app2.setCpuCount(1);
-// app2.setJobType(JobTypeType.SERIAL);
-// app2.setNodeCount(1);
-// app2.setProcessorsPerNode(1);
-// app2.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app2.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir2 = "/home/ogce/scratch";
-//
-// app2.setScratchWorkingDirectory(tempDir2);
-// app2.setInstalledParentPath("/opt/torque/bin/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
trestleshpcHostAddress, appDesc2);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// // Lonestar
-// /*
-// * Application descriptor creation and saving
-// */
-// ApplicationDescription appDesc3 = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app3 = (HpcApplicationDeploymentType)
appDesc3.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name3 =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name3.setStringValue(serviceName);
-// app3.setApplicationName(name);
-// ProjectAccountType projectAccountType3 = app3.addNewProjectAccount();
-// projectAccountType3.setProjectAccountNumber("TG-STA110014S");
-//
-// QueueType queueType3 = app3.addNewQueue();
-// queueType3.setQueueName("normal");
-//
-// app3.setCpuCount(1);
-// app3.setJobType(JobTypeType.SERIAL);
-// app3.setNodeCount(1);
-// app3.setProcessorsPerNode(1);
-// app3.setMaxWallTime(10);
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app3.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir3 = "/home1/01437/ogce";
-//
-// app3.setScratchWorkingDirectory(tempDir3);
-// app3.setInstalledParentPath("/opt/sge6.2/bin/lx24-amd64/");
-//
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription(serviceName,
lonestarHostAddress, appDesc3);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-//
-// }
-//
-// public void createBigRedDocs() {
-// /*
-// * Host
-// */
-// HostDescription host = new HostDescription(SSHHostType.type);
-// host.getType().setHostAddress(bigRed2HostAddress);
-// host.getType().setHostName("bigred2");
-// ((SSHHostType) host.getType()).setHpcResource(true);
-// try {
-// airavataAPI.getApplicationManager().saveHostDescription(host);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); //To change body of catch statement use
File | Settings | File Templates.
-// }
-// /*
-// * App
-// */
-// ApplicationDescription appDesc = new
ApplicationDescription(HpcApplicationDeploymentType.type);
-// HpcApplicationDeploymentType app = (HpcApplicationDeploymentType)
appDesc.getType();
-// ApplicationDeploymentDescriptionType.ApplicationName name =
ApplicationDeploymentDescriptionType.ApplicationName.Factory.newInstance();
-// name.setStringValue("EchoLocal");
-// app.setApplicationName(name);
-//
-// app.setCpuCount(1);
-// app.setJobType(JobTypeType.SERIAL);
-// app.setNodeCount(1);
-// app.setProcessorsPerNode(1);
-//
-// /*
-// * Use bat file if it is compiled on Windows
-// */
-// app.setExecutableLocation("/bin/echo");
-//
-// /*
-// * Default tmp location
-// */
-// String tempDir = "/tmp";
-// String date = (new Date()).toString();
-// date = date.replaceAll(" ", "_");
-// date = date.replaceAll(":", "_");
-//
-// tempDir = tempDir + File.separator
-// + "SimpleEcho" + "_" + date + "_" + UUID.randomUUID();
-//
-// System.out.println(tempDir);
-// app.setScratchWorkingDirectory(tempDir);
-// app.setStaticWorkingDirectory(tempDir);
-// app.setInputDataDirectory(tempDir + File.separator + "inputData");
-// app.setOutputDataDirectory(tempDir + File.separator + "outputData");
-// app.setStandardOutput(tempDir + File.separator +
app.getApplicationName().getStringValue() + ".stdout");
-// app.setStandardError(tempDir + File.separator +
app.getApplicationName().getStringValue() + ".stderr");
-// app.setMaxWallTime(5);
-// app.setJobSubmitterCommand("aprun -n 1");
-// app.setInstalledParentPath("/opt/torque/torque-4.2.3.1/bin/");
-//
-// /*
-// * Service
-// */
-// ServiceDescription serv = new ServiceDescription();
-// serv.getType().setName("SimpleEchoBR");
-//
-// List<InputParameterType> inputList = new
ArrayList<InputParameterType>();
-//
-// InputParameterType input = InputParameterType.Factory.newInstance();
-// input.setParameterName("echo_input");
-// input.setParameterType(StringParameterType.Factory.newInstance());
-// inputList.add(input);
-//
-// InputParameterType[] inputParamList = inputList.toArray(new
InputParameterType[inputList
-//
-// .size()]);
-// List<OutputParameterType> outputList = new
ArrayList<OutputParameterType>();
-// OutputParameterType output =
OutputParameterType.Factory.newInstance();
-// output.setParameterName("echo_output");
-// output.setParameterType(StringParameterType.Factory.newInstance());
-// outputList.add(output);
-//
-// OutputParameterType[] outputParamList = outputList
-// .toArray(new OutputParameterType[outputList.size()]);
-//
-// serv.getType().setInputParametersArray(inputParamList);
-// serv.getType().setOutputParametersArray(outputParamList);
-// try {
-// airavataAPI.getApplicationManager().saveServiceDescription(serv);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// try {
-//
airavataAPI.getApplicationManager().saveApplicationDescription("SimpleEchoBR",
trestleshpcHostAddress, appDesc);
-// } catch (AiravataAPIInvocationException e) {
-// e.printStackTrace(); // To change body of catch statement use
File |
-// // Settings | File Templates.
-// }
-// }
-//
-// public AiravataAPI getAiravataAPI() {
-// return airavataAPI;
-// }
-//
-// public void setAiravataAPI(AiravataAPI airavataAPI) {
-// this.airavataAPI = airavataAPI;
-// }
-//}
-//
