This is an automated email from the ASF dual-hosted git repository.
eroma pushed a commit to branch master
in repository https://gitbox.apache.org/repos/asf/airavata-django-portal.git
The following commit(s) were added to refs/heads/master by this push:
new e0335d2 adding updated search SRA theme
new 9b5b4dc Merge branch 'master' of
https://github.com/apache/airavata-django-portal
e0335d2 is described below
commit e0335d2e861d87363f342787d41855ce6af0ce61
Author: Eroma Abeysinghe <[email protected]>
AuthorDate: Fri Nov 1 09:08:47 2019 -0400
adding updated search SRA theme
---
.../wagtailapps/base/fixtures/newserachingsra.json | 2830 ++++++++++++++++++++
1 file changed, 2830 insertions(+)
diff --git a/django_airavata/wagtailapps/base/fixtures/newserachingsra.json
b/django_airavata/wagtailapps/base/fixtures/newserachingsra.json
new file mode 100644
index 0000000..26ba291
--- /dev/null
+++ b/django_airavata/wagtailapps/base/fixtures/newserachingsra.json
@@ -0,0 +1,2830 @@
+[
+{
+ "model": "auth.group",
+ "pk": 1,
+ "fields": {
+ "name": "Moderators",
+ "permissions": [
+ [
+ "access_admin",
+ "wagtailadmin",
+ "admin"
+ ],
+ [
+ "add_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "change_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "delete_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "add_image",
+ "wagtailimages",
+ "image"
+ ],
+ [
+ "change_image",
+ "wagtailimages",
+ "image"
+ ],
+ [
+ "delete_image",
+ "wagtailimages",
+ "image"
+ ]
+ ]
+ }
+},
+{
+ "model": "auth.group",
+ "pk": 2,
+ "fields": {
+ "name": "Editors",
+ "permissions": [
+ [
+ "access_admin",
+ "wagtailadmin",
+ "admin"
+ ],
+ [
+ "add_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "change_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "delete_document",
+ "wagtaildocs",
+ "document"
+ ],
+ [
+ "add_image",
+ "wagtailimages",
+ "image"
+ ],
+ [
+ "change_image",
+ "wagtailimages",
+ "image"
+ ],
+ [
+ "delete_image",
+ "wagtailimages",
+ "image"
+ ]
+ ]
+ }
+},
+{
+ "model": "auth.user",
+ "pk": 1,
+ "fields": {
+ "password":
"pbkdf2_sha256$36000$9e7NwEtywbng$bEmcs9cz0bgp1ai2Kbzfn8GgccaPJKvC11DIbyPDMMo=",
+ "last_login": "2018-04-10T23:05:05.442Z",
+ "is_superuser": true,
+ "username": "stephenpaul2727",
+ "first_name": "",
+ "last_name": "",
+ "email": "[email protected]",
+ "is_staff": true,
+ "is_active": true,
+ "date_joined": "2018-04-05T22:51:58.404Z",
+ "groups": [],
+ "user_permissions": []
+ }
+},
+{
+ "model": "auth.user",
+ "pk": 2,
+ "fields": {
+ "password":
"pbkdf2_sha256$36000$ERbcYUAHzqrT$FC/sDt2R810gdwczdl8qn26EWPIgNoQKcigtSS7Dhl0=",
+ "last_login": "2019-10-31T17:12:28.081Z",
+ "is_superuser": true,
+ "username": "eabeysin",
+ "first_name": "",
+ "last_name": "",
+ "email": "[email protected]",
+ "is_staff": true,
+ "is_active": true,
+ "date_joined": "2019-10-30T20:28:00.324Z",
+ "groups": [],
+ "user_permissions": []
+ }
+},
+{
+ "model": "sessions.session",
+ "pk": "dbq2tskfv9e3olqn003lijmq7x894bl5",
+ "fields": {
+ "session_data":
"ZmViZTBkNDE5ZWM1ODBlYjkxYzdhY2M3MDA3YzBkNmY2OWZiY2QwMTp7Il9hdXRoX3VzZXJfaWQiOiIyIiwiX2F1dGhfdXNlcl9iYWNrZW5kIjoiZGphbmdvLmNvbnRyaWIuYXV0aC5iYWNrZW5kcy5Nb2RlbEJhY2tlbmQiLCJfYXV0aF91c2VyX2hhc2giOiJmMDhmMWE4ZGUyZGMxZTE4YWE4MjVhNDg4YzcyNzRhZDViMDJlMjVjIn0=",
+ "expire_date": "2019-11-13T20:28:39.134Z"
+ }
+},
+{
+ "model": "sessions.session",
+ "pk": "kwd8gsxstz6xt7y029hk8uhaeg3ssh4x",
+ "fields": {
+ "session_data":
"YjRkOTM2ZDBjMjRmNjFlNDlkMWYyNjFjMGY1OTQ5MjBhODM0MWZhZjp7Il9hdXRoX3VzZXJfaWQiOiIyIiwiX2F1dGhfdXNlcl9iYWNrZW5kIjoiZGphbmdvLmNvbnRyaWIuYXV0aC5iYWNrZW5kcy5Nb2RlbEJhY2tlbmQiLCJfYXV0aF91c2VyX2hhc2giOiJmMDhmMWE4ZGUyZGMxZTE4YWE4MjVhNDg4YzcyNzRhZDViMDJlMjVjIiwid2FndGFpbC1wcmV2aWV3LTMiOlsiY3NyZm1pZGRsZXdhcmV0b2tlbj1SUUJ0YzZ6SGF4MkQ3YjI4T2h2MHVuZ0sxck9zNXhHZjhNdG9YUmdXRzdCMVc5OFVlREZNNzJkNHVNWlZjY2hWJm5leHQ9JnRpdGxlPUhvbWUmcm93LVRPVEFMX0ZPUk1TPTUmcm93LUlOSVRJQUxfRk9STVM9NSZ
[...]
+ "expire_date": "2019-11-15T09:17:45.215Z"
+ }
+},
+{
+ "model": "django_airavata_auth.emailtemplate",
+ "pk": 1,
+ "fields": {
+ "subject": "{{first_name}} {{last_name}} ({{username}}), Please Verify
Your Email Account in {{portal_title}}",
+ "body": "<p>\n Dear {{first_name}} {{last_name}},\n
</p>\n\n <p>\n Someone has created an account with this email
address. If this was\n you, click the link below to verify your email
address:\n </p>\n\n <p><a href=\"{{url}}\">{{url}}</a></p>\n\n
<p>If you didn't create this account, just ignore this message.</p>",
+ "created_date": "2019-10-30T18:47:50.475Z",
+ "updated_date": "2019-10-30T18:47:50.475Z"
+ }
+},
+{
+ "model": "django_airavata_auth.emailtemplate",
+ "pk": 2,
+ "fields": {
+ "subject": "New User Account Was Created Successfully",
+ "body": "<p>Gateway Portal: {{http_host}}</p>\n <p>Tenant:
{{gateway_id}}</p>\n <p>Username: {{username}}</p>\n <p>Name:
{{first_name}} {{last_name}}</p>\n <p>Email: {{email}}</p>",
+ "created_date": "2019-10-30T18:47:50.476Z",
+ "updated_date": "2019-10-30T18:47:50.476Z"
+ }
+},
+{
+ "model": "django_airavata_auth.emailtemplate",
+ "pk": 3,
+ "fields": {
+ "subject": "{{first_name}} {{last_name}} ({{username}}), Reset your
password in {{portal_title}}",
+ "body": "<p>\n Dear {{first_name}} {{last_name}},\n
</p>\n\n <p>\n Please click the link below to reset your
password. This link is\n valid for 24 hours.\n </p>\n\n
<p><a href=\"{{url}}\">{{url}}</a></p>\n\n <p>If you didn't request to
reset your password, just ignore this message.</p>",
+ "created_date": "2019-10-30T18:47:50.500Z",
+ "updated_date": "2019-10-30T18:47:50.500Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 1,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=uJkBOY2XeX8";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"459\" height=\"344\"
src=\"https://www.youtube.com/embed/uJkBOY2XeX8?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Contractile Injection Systems (CIS) in the Sequence Read
Archive",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/uJkBOY2XeX8/hqdefault.jpg";,
+ "width": 459,
+ "height": 344,
+ "last_updated": "2019-10-31T19:07:36.465Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 2,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=cTqNDb3VKzk";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"459\" height=\"344\"
src=\"https://www.youtube.com/embed/cTqNDb3VKzk?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "What Viruses are Carried by Mosquitos in Southern
California?",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/cTqNDb3VKzk/hqdefault.jpg";,
+ "width": 459,
+ "height": 344,
+ "last_updated": "2019-11-01T00:51:05.715Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 3,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=cn5i00ygg-w";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"480\" height=\"270\"
src=\"https://www.youtube.com/embed/cn5i00ygg-w?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Virus PhiX174 - a Common Contaminant of Metagenomes",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/cn5i00ygg-w/hqdefault.jpg";,
+ "width": 480,
+ "height": 270,
+ "last_updated": "2019-11-01T00:53:51.825Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 4,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=a_K4asDZwvw";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"480\" height=\"270\"
src=\"https://www.youtube.com/embed/a_K4asDZwvw?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Antibiotic Resistance in Patients Undergoing Immune
Checkpoint Therapy",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/a_K4asDZwvw/hqdefault.jpg";,
+ "width": 480,
+ "height": 270,
+ "last_updated": "2019-11-01T07:02:04.909Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 5,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=-dX_ijbDOkA";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"459\" height=\"344\"
src=\"https://www.youtube.com/embed/-dX_ijbDOkA?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Antibiotic Resistance In Patients Undergoing Selective
Digestive Deconatmination",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/-dX_ijbDOkA/hqdefault.jpg";,
+ "width": 459,
+ "height": 344,
+ "last_updated": "2019-11-01T07:06:35.192Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 6,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=x_qWwKJBT7M";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"480\" height=\"270\"
src=\"https://www.youtube.com/embed/x_qWwKJBT7M?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Can Antibiotic Resistance Genes in the Human Skin Microbiome
be Spread Through Swimming Pools?",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/x_qWwKJBT7M/hqdefault.jpg";,
+ "width": 480,
+ "height": 270,
+ "last_updated": "2019-11-01T07:06:35.297Z"
+ }
+},
+{
+ "model": "wagtailembeds.embed",
+ "pk": 7,
+ "fields": {
+ "url": "https://www.youtube.com/watch?v=CwijuLSJm8M";,
+ "max_width": null,
+ "type": "video",
+ "html": "<iframe width=\"480\" height=\"270\"
src=\"https://www.youtube.com/embed/CwijuLSJm8M?feature=oembed\";
frameborder=\"0\" allow=\"accelerometer; autoplay; encrypted-media; gyroscope;
picture-in-picture\" allowfullscreen></iframe>",
+ "title": "Antibiotic Resistance Genes in Cystic Fibrosis Lung
Metagenomes",
+ "author_name": "Kyle Levi",
+ "provider_name": "YouTube",
+ "thumbnail_url": "https://i.ytimg.com/vi/CwijuLSJm8M/hqdefault.jpg";,
+ "width": 480,
+ "height": 270,
+ "last_updated": "2019-11-01T07:06:35.411Z"
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 1,
+ "fields": {
+ "collection": 1,
+ "title": "searching-sra-logo",
+ "file": "original_images/searchingsralogo.png",
+ "width": 983,
+ "height": 228,
+ "created_at": "2018-04-05T22:55:06.117Z",
+ "uploaded_by_user": [
+ "stephenpaul2727"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 2,
+ "fields": {
+ "collection": 1,
+ "title": "sra-top-banner",
+ "file": "original_images/sra-top-banner.png",
+ "width": 2320,
+ "height": 284,
+ "created_at": "2018-04-05T23:02:23.366Z",
+ "uploaded_by_user": [
+ "stephenpaul2727"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 3,
+ "fields": {
+ "collection": 1,
+ "title": "scigap-header",
+ "file": "original_images/scigap-header-logo.png",
+ "width": 300,
+ "height": 100,
+ "created_at": "2018-04-05T23:40:50.335Z",
+ "uploaded_by_user": [
+ "stephenpaul2727"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 4,
+ "fields": {
+ "collection": 1,
+ "title": "airavata-logo",
+ "file": "original_images/powered-by-airavata-transparent_Igr9qt8.png",
+ "width": 1734,
+ "height": 648,
+ "created_at": "2018-04-05T23:41:55.486Z",
+ "uploaded_by_user": [
+ "stephenpaul2727"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 5,
+ "fields": {
+ "collection": 1,
+ "title": "Login page",
+ "file": "original_images/Screen_Shot_2019-10-31_at_12.47.55_AM.png",
+ "width": 1470,
+ "height": 996,
+ "created_at": "2019-10-31T04:48:16.459Z",
+ "uploaded_by_user": [
+ "eabeysin"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 6,
+ "fields": {
+ "collection": 1,
+ "title": "metagenomenumber.png",
+ "file": "original_images/metagenomenumber_lV0X7KX.png",
+ "width": 755,
+ "height": 576,
+ "created_at": "2019-11-01T00:39:36.107Z",
+ "uploaded_by_user": [
+ "eabeysin"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": 205360
+ }
+},
+{
+ "model": "wagtailimages.image",
+ "pk": 7,
+ "fields": {
+ "collection": 1,
+ "title": "Workspace",
+ "file": "original_images/Screen_Shot_2019-10-31_at_12.52.14_AM.png",
+ "width": 1998,
+ "height": 990,
+ "created_at": "2019-11-01T09:11:41.189Z",
+ "uploaded_by_user": [
+ "eabeysin"
+ ],
+ "focal_point_x": null,
+ "focal_point_y": null,
+ "focal_point_width": null,
+ "focal_point_height": null,
+ "file_size": null
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 1,
+ "fields": {
+ "filter_spec": "max-165x165",
+ "file": "images/searchingsralogo.max-165x165.png",
+ "width": 165,
+ "height": 38,
+ "focal_point_key": "",
+ "image": 1
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 2,
+ "fields": {
+ "filter_spec": "max-165x165",
+ "file": "images/sra-top-banner.max-165x165.png",
+ "width": 165,
+ "height": 20,
+ "focal_point_key": "",
+ "image": 2
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 3,
+ "fields": {
+ "filter_spec": "original",
+ "file": "images/searchingsralogo.original.png",
+ "width": 983,
+ "height": 228,
+ "focal_point_key": "",
+ "image": 1
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 4,
+ "fields": {
+ "filter_spec": "original",
+ "file": "images/sra-top-banner.original.png",
+ "width": 2320,
+ "height": 284,
+ "focal_point_key": "",
+ "image": 2
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 5,
+ "fields": {
+ "filter_spec": "max-800x600",
+ "file": "images/searchingsralogo.max-800x600.png",
+ "width": 800,
+ "height": 185,
+ "focal_point_key": "",
+ "image": 1
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 6,
+ "fields": {
+ "filter_spec": "width-500",
+ "file": "images/searchingsralogo.width-500.png",
+ "width": 500,
+ "height": 115,
+ "focal_point_key": "",
+ "image": 1
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 7,
+ "fields": {
+ "filter_spec": "max-140x43",
+ "file": "images/searchingsralogo.max-140x43.png",
+ "width": 140,
+ "height": 32,
+ "focal_point_key": "",
+ "image": 1
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 8,
+ "fields": {
+ "filter_spec": "max-165x165",
+ "file": "images/scigap-header-logo.max-165x165.png",
+ "width": 165,
+ "height": 55,
+ "focal_point_key": "",
+ "image": 3
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 9,
+ "fields": {
+ "filter_spec": "max-165x165",
+ "file":
"images/powered-by-airavata-transparent_Igr9qt8.max-165x165.png",
+ "width": 165,
+ "height": 61,
+ "focal_point_key": "",
+ "image": 4
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 10,
+ "fields": {
+ "filter_spec": "original",
+ "file": "images/scigap-header-logo.original.png",
+ "width": 300,
+ "height": 100,
+ "focal_point_key": "",
+ "image": 3
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 11,
+ "fields": {
+ "filter_spec": "original",
+ "file": "images/powered-by-airavata-transparent_Igr9qt8.original.png",
+ "width": 1734,
+ "height": 648,
+ "focal_point_key": "",
+ "image": 4
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 12,
+ "fields": {
+ "filter_spec": "max-800x600",
+ "file": "images/Screen_Shot_2019-10-31_at_12.47.55_AM.max-800x600.png",
+ "width": 800,
+ "height": 542,
+ "focal_point_key": "",
+ "image": 5
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 13,
+ "fields": {
+ "filter_spec": "width-500",
+ "file": "images/Screen_Shot_2019-10-31_at_12.47.55_AM.width-500.png",
+ "width": 500,
+ "height": 338,
+ "focal_point_key": "",
+ "image": 5
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 14,
+ "fields": {
+ "filter_spec": "max-165x165",
+ "file": "images/Screen_Shot_2019-10-31_at_12.47.55_AM.max-165x165.png",
+ "width": 165,
+ "height": 111,
+ "focal_point_key": "",
+ "image": 5
+ }
+},
+{
+ "model": "wagtailimages.rendition",
+ "pk": 18,
+ "fields": {
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\"c5aa4992-a2f6-433b-b56e-a9b099da65b1\"}]",
+ "page": 7
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 16,
+ "fields": {
+ "sort_order": 6,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\", \"body\":
\"<ul><li>Antibiotic Resistance in Patients Undergoing Immune Checkpoint
Therapy</li></ul>\"}, \"id\": \"2e070750-63e7-49df-b393-30ee5970dc9b\"},
{\"type\": \"embed_block\", \"value\": {\"embed\":
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\"offset-md-2 col-md-10 mx-auto mt-0 mb-5\"}, \"id\":
\"c9cbe24d-909c-4201-9ce9-05ef5031c6b6\"}]",
+ "page": 7
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 17,
+ "fields": {
+ "sort_order": 3,
+ "body": "[{\"type\": \"bootstrap_button\", \"value\":
{\"button_text\": \"Protein Search\", \"button_link\": \"protein-searches\",
\"button_color\": \"\", \"button_size\": \"btn-sm\", \"custom_class\":
\"offset-md-4 col-md-2 button-sra mb-10\"}, \"id\":
\"0a02ad8f-5f5a-4fde-b017-72ab9114d261\"}, {\"type\": \"bootstrap_button\",
\"value\": {\"button_text\": \"Nucleotide Search\", \"button_link\":
\"nucleotide-searches\", \"button_color\": \"\", \"button_size\": \"btn-sm\",
\"custo [...]
+ "page": 3
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 18,
+ "fields": {
+ "sort_order": 0,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-12 text-center mt-2\", \"body\": \"<h2>Protein
Searches</h2>\"}, \"id\": \"76523e90-a067-4e49-af23-74cbf04d366a\"}]",
+ "page": 8
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 19,
+ "fields": {
+ "sort_order": 1,
+ "body": "[{\"type\": \"horizontal_rule\", \"value\": {\"thickness\":
2, \"bg_color\": \"#20b2aa\", \"custom_class\": \"col-md-10 mx-auto\"}, \"id\":
\"3902258b-bcae-4d55-8896-0b60f5121461\"}]",
+ "page": 8
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 20,
+ "fields": {
+ "sort_order": 2,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-4\", \"body\": \"<p>The SRA houses
DNA sequences, and so for protein:nucleotide searches we need to translate the
SRA DNA sequences to compare them to the fasta file of protein sequences you
upload. We use the ultrafast DIAMOND algorithm to compare translated DNA and
proteins. We provide you with a compressed zip file containing the
tab-separated diamond output for your downstream proce [...]
+ "page": 8
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 21,
+ "fields": {
+ "sort_order": 0,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-12 text-center mt-5\", \"body\":
\"<h2>Metagenomes</h2>\"}, \"id\": \"09641fe1-e7e2-4220-bb4c-575e32203dfa\"}]",
+ "page": 9
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 22,
+ "fields": {
+ "sort_order": 1,
+ "body": "[{\"type\": \"horizontal_rule\", \"value\": {\"thickness\":
2, \"bg_color\": \"#20b2aa\", \"custom_class\": \"col-md-10 mx-auto\"}, \"id\":
\"7ad6426d-0fc7-4c4b-bd2e-210176f2d571\"}]",
+ "page": 9
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 23,
+ "fields": {
+ "sort_order": 2,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-4\", \"body\": \"<p>We have scoured
the sequence read archive to identify those data sets that are random
metagenomic sequences. There are two popular approaches often called
metagenomics: First, amplicon sequencing includes amplifying a single piece of
DNA (e.g. the 16S gene from bacteria or COX1 gene from eukaryotes), and
sequencing that gene en masse. These studies provide a taxonomi [...]
+ "page": 9
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 24,
+ "fields": {
+ "sort_order": 0,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-12 text-center mt-5\", \"body\": \"<h2>Nucleotide
Searches</h2>\"}, \"id\": \"d1d7f554-d33b-4298-8811-19ac9ac42b0f\"}]",
+ "page": 10
+ }
+},
+{
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+ "pk": 25,
+ "fields": {
+ "sort_order": 1,
+ "body": "[{\"type\": \"horizontal_rule\", \"value\": {\"thickness\":
2, \"bg_color\": \"20b2aa\", \"custom_class\": \"col-md-10 mx-auto\"}, \"id\":
\"2834366b-cea4-490d-aedf-6b8d7ecef04c\"}]",
+ "page": 10
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 26,
+ "fields": {
+ "sort_order": 2,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-4\", \"body\": \"<p>The SRA houses
DNA sequences, and so for nucleotide:nucleotide searches we use <a
href=\\\"http://bowtie-bio.sourceforge.net/bowtie2/index.shtml\\\";>bowtie2</a>
to compare the fasta file of DNA sequences you upload against the set of SRA
IDs of the metagenomes that you choose to search. We convert the output to
binary sequence alignment format and provide you with a [...]
+ "page": 10
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 27,
+ "fields": {
+ "sort_order": 3,
+ "body": "[{\"type\": \"image_block\", \"value\": {\"image\": 6,
\"caption\": \"\", \"width\": \"540\", \"height\": 400, \"redirect_url\": \"\",
\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\"}, \"id\":
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\"value\": {\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\", \"body\":
\"<p>In 2018 students at SDSU used the underpinnings of searchsra.org to
develop independent research projects to expl [...]
+ "page": 7
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 28,
+ "fields": {
+ "sort_order": 7,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\", \"body\":
\"<ul><li>Antibiotic Resistance In Patients Undergoing Selective Digestive
Deconatmination</li></ul>\"}, \"id\":
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\"value\": {\"embed\": \"https://www.youtube.com/watch?v=-dX_ijbDOkA\";,
\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-0 mb-5\"}, \"id\":
\"2c6678f5-e5d0-4878-869e-e4620b89 [...]
+ "page": 7
+ }
+},
+{
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+ "pk": 29,
+ "fields": {
+ "sort_order": 8,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\", \"body\":
\"<ul><li>Can Antibiotic Resistance Genes in the Human Skin Microbiome be
Spread Through Swimming Pools?</li></ul>\"}, \"id\":
\"8b0a80e4-7ec4-4038-b177-99d33ffba7eb\"}, {\"type\": \"embed_block\",
\"value\": {\"embed\": \"https://www.youtube.com/watch?v=x_qWwKJBT7M\";,
\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-0 mb-5\"}, \"id\":
\"86f9f2e2-54d6-424d [...]
+ "page": 7
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 30,
+ "fields": {
+ "sort_order": 9,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"offset-md-2 col-md-10 mx-auto mt-2\", \"body\":
\"<ul><li>Antibiotic Resistance Genes in Cystic Fibrosis Lung
Metagenomes</li></ul>\"}, \"id\": \"0bc68b76-28c1-4b82-83ef-949866fa4f47\"},
{\"type\": \"embed_block\", \"value\": {\"embed\":
\"https://www.youtube.com/watch?v=CwijuLSJm8M\";, \"custom_class\":
\"offset-md-2 col-md-10 mx-auto mt-0\"}, \"id\":
\"b5a52afb-f2dd-47b5-9a81-f7190d8715a6\"}]",
+ "page": 7
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 31,
+ "fields": {
+ "sort_order": 0,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-12 text-center mt-5\", \"body\": \"<h2><b>Cite
Us</b></h2>\"}, \"id\": \"8902a118-08d2-4851-a4a0-13af0598bb78\"}]",
+ "page": 11
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 32,
+ "fields": {
+ "sort_order": 1,
+ "body": "[{\"type\": \"horizontal_rule\", \"value\": {\"thickness\":
2, \"bg_color\": \"#20b2aa\", \"custom_class\": \"col-md-10 mx-auto\"}, \"id\":
\"eeb20565-91f8-4964-b207-731e171edf17\"}]",
+ "page": 11
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 33,
+ "fields": {
+ "sort_order": 2,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-4\", \"body\": \"<p>It is critical
for bioinformaticians to have their work cited so we can continue to develop
exciting tools for you. Please be sure to not only cite searchsra.org, but to
also cite the tools that we have used to build this amazing resource.</p><p>You
can download the <a
href=\\\"https://www.searchsra.org/themes/searchingsra-gateway-theme/assets/img/ref.tex\\\";>bibtex
[...]
+ "page": 11
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 34,
+ "fields": {
+ "sort_order": 1,
+ "body": "[{\"type\": \"horizontal_rule\", \"value\": {\"thickness\":
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\"834a7fb0-3a87-41e1-9835-9c7f065536e0\"}]",
+ "page": 5
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 35,
+ "fields": {
+ "sort_order": 2,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-4\", \"body\": \"<p>Searching the SRA
was the brainchild of <a href=\\\"https://edwards.sdsu.edu/research/\\\";>Rob
Edwards</a> at <a href=\\\"https://www.sdsu.edu/\\\";>San Diego State
University</a>. As a pioneer of metagenomics, Rob was frustrated that most of
the DNA sequences that were publicly available were not searchable or useable,
and he couldn\\u2019t find crAssphage in any of [...]
+ "page": 5
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 36,
+ "fields": {
+ "sort_order": 3,
+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-5\", \"body\": \"<p><b>Save &
Launch an Experiment</b></p><ul><li>To create a new Experiment from the
Dashboard select your application.</li><li>In Create Experiment default values
are provided for the name.<ul><li>Experiment Description
(Optional)</li><li>Project (LOV) - Last used will be selected for
you</li><li>Application (LOV)</li><li>Application configurations will have
defaul [...]
+ "page": 4
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.rowblankpagerelation",
+ "pk": 37,
+ "fields": {
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+ "body": "[{\"type\": \"paragraph_block\", \"value\":
{\"custom_class\": \"col-md-10 mx-auto mt-5\", \"body\": \"<p><b>Other Gateway
Features</b></p><ul><li>Users can share their experiments with other gateway
users or user groups. When sharing, you can decide on the level of access to
grant.<ul><li>Read Access</li><li>Write Access</li></ul></li><li>To create new
experiments similar to an existing one, you can clone the experiment from
Experiment Summary page.</li><li>Users can cr [...]
+ "page": 4
+ }
+},
+{
+ "model": "django_airavata_wagtail_base.blankpage",
+ "pk": 3,
+ "fields": {
+ "show_navbar": "yes",
+ "show_nav_extra": "yes",
+ "show_footer": "yes",
+ "show_announcements": "yes"
+ }
+},
+{
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+ "pk": 4,
+ "fields": {
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+ }
+},
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+ "pk": 5,
+ "fields": {
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+ "show_announcements": "yes"
+ }
+},
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+ "pk": 6,
+ "fields": {
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+ "show_announcements": "yes"
+ }
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+ "pk": 7,
+ "fields": {
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+ "show_nav_extra": "yes",
+ "show_footer": "yes",
+ "show_announcements": "yes"
+ }
+},
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+ "pk": 8,
+ "fields": {
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+ }
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+ "pk": 9,
+ "fields": {
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+ "pk": 10,
+ "fields": {
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+ "pk": 11,
+ "fields": {
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+ "show_announcements": "yes"
+ }
+}
+]
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