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• (airavata) branch cybershuttle-staging updated (361544c204 -> 497b86d76e) yasith
• (airavata) branch cybershuttle-staging updated (54686b01e0 -> 361544c204) yasith
• (airavata) branch master updated: Delete unused SSHCredentialGenerator (#240) yasith
• (airavata) branch dependabot/npm_and_yarn/airavata-local-agent/next-14.2.26 created (now afc23c3920) github-bot
• (airavata) branch master updated: gateway switching for local agent (#469) yasith
• (airavata) branch cybershuttle-staging updated (a734f7ec61 -> 54686b01e0) yasith
  • (airavata) 01/01: Merge pull request #498 from ganning127/more-fixes yasith
• (airavata) branch cybershuttle-staging updated (3e45510108 -> 058d9b9021) yasith
  • (airavata) 01/01: Merge pull request #497 from ganning127/post-projects yasith
• (airavata) branch cybershuttle-staging updated: update DevDbInitializer project list yasith
• (airavata) branch cybershuttle-dev updated (23c31506cc -> eec2402b5b) yasith
  • (airavata) 07/07: fix api server assembly after the dependency update. yasith
  • (airavata) 05/07: fix rabbitmq deprecation yasith
  • (airavata) 02/07: partially update deprecated code yasith
  • (airavata) 06/07: fix dozer deprecations, add httpclient dep yasith
• (airavata) branch cybershuttle-dev updated (f42bf98491 -> 23c31506cc) yasith
  • (airavata) 06/24: rename devcontainer to Airavata yasith
  • (airavata) 09/24: change protobuf plugin to a maintained one yasith
  • (airavata) 12/24: fix pom issues when running in devcontainer yasith
  • (airavata) 14/24: simplify devcontainer. unify maven-compiler plugin version. yasith
  • (airavata) 02/24: move self-signed certs to a single location yasith
  • (airavata) 11/24: fix generated protos unused issue yasith
  • (airavata) 21/24: cleanup code. add placeholders for job monitor email/pw in airavata-server.properties yasith
  • (airavata) 17/24: parametrize pom versions. add maven-enforcer rule for dependency convergence and fix version issues. yasith
  • (airavata) 15/24: migrate javax.mail to jakarta.mail to fix email-monitor bug. exclude conflicting angus-mail dependency. add missing @Deprecated tags. yasith
  • (airavata) 07/24: move docker-compose file to .devcontainer yasith
  • (airavata) 08/24: bump all jdk deps to 17. get devcontainer to working state. add launch.json for vscode integration. add openjpa runtimeoptimization tag to persistence.xml. bump mysql connector to 8.0.31. add dns tags to keystore generation script (browser https compatibility), move keystores to top-level and add build-time copy to project resources. fix Serializable warning in UserPK.java yasith
  • (airavata) 03/24: create devcontainer.json and integrate with docker-compose file. fix bugs. yasith
  • (airavata) 19/24: get hibernate orm to validate against test db. manually specify catalog for conflicting entities. yasith
  • (airavata) 20/24: fix issues with helix participant and job engine starter yasith
  • (airavata) 05/24: add AF2Complex notebook yasith
  • (airavata) 04/24: updated devcontainer and compose for easy use in vscode yasith
  • (airavata) 18/24: migrate openjpa to hibernate, update pool and dbcp deps to pool2 and dbcp2. yasith
  • (airavata) 10/24: update rabbitmq and proto versions, fix proto path in agent-service yasith
  • (airavata) 23/24: initial research framework yasith
• (airavata) branch cybershuttle-staging updated (9b3ce7ca54 -> 3e45510108) yasith
  • (airavata) 01/01: update DevDataInitializer yasith
• (airavata) branch cybershuttle-staging updated: update DevDataInitializer yasith
  • (airavata) branch cybershuttle-staging updated: update DevDataInitializer yasith
• (airavata-site) branch asf-site updated (2e9170b -> cf7a79d) smarru
  • (airavata-site) 01/01: Merge pull request #12 from piyushupadhyay19/fix-typos smarru
• (airavata) branch dependabot/go_modules/modules/agent-framework/airavata-agent/golang.org/x/net-0.38.0 created (now ff5c577879) github-bot
• (airavata) branch dependabot/npm_and_yarn/airavata-local-agent/multi-b29f0fd473 created (now 3f2880ff4b) github-bot
• (airavata) branch dependabot/go_modules/modules/agent-framework/airavata-agent/golang.org/x/crypto-0.35.0 deleted (was 96381137fa) github-bot
• (airavata) branch dependabot/pip/dev-tools/ansible/jinja2-3.1.6 created (now 598981f85f) github-bot
• (airavata) branch dependabot/go_modules/modules/agent-framework/airavata-fuse/src/grpcfs_client/golang.org/x/net-0.36.0 created (now a33163f611) github-bot
• (airavata) branch master updated (619578bf19 -> 0de85939af) yasith
  • (airavata) 01/01: Merge pull request #492 from apache/dependabot/go_modules/modules/agent-framework/airavata-agent/golang.org/x/crypto-0.35.0 yasith
• (airavata) branch dependabot/go_modules/modules/agent-framework/airavata-agent/golang.org/x/crypto-0.35.0 created (now 96381137fa) github-bot
• (airavata) branch cybershuttle-staging updated: Enabling audio like widjets in magic extension dimuthuupe
• (airavata) branch cybershuttle-staging updated: Minor logging improvements dimuthuupe
• (airavata) branch cybershuttle-staging updated: Allow terminated & stopped sessions from being blocked dimuthuupe
• (airavata) branch cybershuttle-staging updated: Support session termination & deletion on jupyter dimuthuupe
• (airavata) branch cybershuttle-staging updated (43dab315f9 -> f063461cd6) dimuthuupe
• (airavata) branch cybershuttle-staging updated: resolve cell id not incrementing in remote exec mode yasith
• (airavata) branch orchestratorTaskBreakdown deleted (was 85885d9cbf) yasith
• (airavata) branch cybershuttle-staging updated (9308a2423c -> 96e9689ae5) ganning
  • (airavata) 01/01: Merge pull request #489 from ganning127/agenda-change ganning
• (airavata) branch cybershuttle-staging updated (1fb8450b81 -> 9308a2423c) ganning
  • (airavata) 01/01: Merge pull request #488 from ganning127/fixes-for-thurs ganning
• (airavata) branch cybershuttle-staging updated: move env_name generation to AgentManagementHandler yasith
• (airavata) branch cybershuttle-staging updated: add separate --environ input to agent. add js2 targets to makefile. update sdk to pass environ yasith
• (airavata) branch staging deleted (was f025f12142) yasith
• (airavata) branch cybershuttle-staging updated (3069b06b8b -> f95f2a916e) ganning
  • (airavata) 01/01: Merge pull request #486 from ganning127/fixes-for-wed ganning
• (airavata) branch Agent-HTML-Support created (now 6acef072af) dimuthuupe
  • (airavata) 01/01: Support for HTML and JS support for magic output dimuthuupe
• (airavata) branch cybershuttle-staging updated: Meta scheduling behavior for agent launch dimuthuupe
• (airavata) branch cybershuttle-staging updated (6e5d934534 -> e90cb7b30f) yasith
  • (airavata) 01/01: Merge pull request #487 from apache/Agent-HTML-Support yasith
• (airavata) branch cybershuttle-staging updated: updated the hub data folder and included pip packages lahirujayathilake
• (airavata) branch cybershuttle-staging updated: bump python sdk version to 2.0.9 yasith
• (airavata) branch cybershuttle-staging updated: update catalog data in DevDataInitiializer yasith
• (airavata) branch cybershuttle-staging updated: included ipywidgets for hub user containers lahirujayathilake
• (airavata) branch cybershuttle-staging updated: display version when loading airavata_jupyter_magic. add --use parameter to pass allowed resources. move default variables around. add %restart_runtime to magic detector, show %stat_runtime command in the display message. yasith
• (airavata) branch cybershuttle-staging updated: update DevDataInitializer projects/paths, update the application.yml bundled with research-service. yasith
• (airavata) branch dependabot/maven/modules/computer-resource-monitoring-service/org.quartz-scheduler-quartz-2.3.2 updated (bd485b66f2 -> f424000456) github-bot
• (airavata) branch dependabot/maven/modules/airavata-metascheduler/metadata-analyzer/org.quartz-scheduler-quartz-2.3.2 updated (8c4732dacc -> 1833e74d7d) github-bot
• (airavata) branch master updated (3420f70e16 -> 619578bf19) yasith
  • (airavata) 01/01: Merge pull request #468 from riccog/master yasith
• (airavata) branch cybershuttle-staging updated (4952fadca2 -> f6251e9b34) yasith
  • (airavata) 01/01: Merge pull request #485 from ganning127/new-features yasith
• (airavata) branch cybershuttle-staging updated: update projects in research-service DevDataInitializer. yasith
• (airavata) branch auroraMesosIntegration deleted (was bf5d8c7964) yasith
• (airavata) branch nextcloud deleted (was 2bbfd8cdee) yasith
• (airavata) branch master-staging-merge deleted (was e61bcbb9d3) yasith
• (airavata) branch cybershuttle-staging updated: fix sdk bugs and agent bugs yasith
• (airavata) branch cybershuttle-staging updated: handle empty conda/pip deps, fix agent issues yasith
• (airavata) branch airavata-3287 deleted (was 8f09ec2afb) yasith
• (airavata) branch workflow-support deleted (was 4ea83c8f48) yasith
• (airavata) branch new-workflow-design deleted (was 509f2037ea) yasith
• (airavata) branch cybershuttle-staging updated: move mktemp from agent.sh into airavata-agent yasith
• (airavata) branch cybershuttle-staging updated: fix issues in agent/sdk for creating custom environments. update agent deployment scripts yasith
• (airavata) branch airavata-gov-registry deleted (was b6e07d7ba9) yasith
• (airavata) branch grouper-integration deleted (was 3d5af1950f) yasith
• (airavata) branch airavata-3282 deleted (was d08780b44a) yasith
• (airavata) branch deprecated-gfac-modules deleted (was 1e2f784a71) yasith
• (airavata) branch data-model-pre-1.0-discussion deleted (was 3f216348fb) yasith
• (airavata) branch airavata-docker deleted (was c139d656c5) yasith
• (airavata) branch cybershuttle-staging updated (b212d69258 -> 21d1de0226) yasith
  • (airavata) 04/06: update AgentManagementHandler to send libraries, pip, and mounts in the Agent launch request. yasith
  • (airavata) 01/06: Changed the uploading file size in enveomics gateway yasith
  • (airavata) 02/06: ide-integration docker-compose changes yasith
  • (airavata) 03/06: update agent to accept libraries, pip, and mounts as input. yasith
  • (airavata) 06/06: add overlay fs to agent for rw access. update makefile scripts, add stderr logging to agent yasith
• (airavata) branch cybershuttle-staging updated (fcb0c50670 -> b212d69258) dimuthuupe
  • (airavata) 01/06: refactoring UI and responsive changes dimuthuupe
  • (airavata) 03/06: Support logout dimuthuupe
  • (airavata) 05/06: Condense to single resource page + allow unauthenticated routes dimuthuupe
  • (airavata) 04/06: Homepage + redirecting logins dimuthuupe
  • (airavata) 06/06: Cybershuttle.org homepage copy dimuthuupe
  • (airavata) 02/06: Add auth to swagger dimuthuupe
• (airavata) branch cybershuttle-staging updated: dev authz token filter for development lahirujayathilake
• (airavata) branch cybershuttle-staging created (now 12435359d0) lahirujayathilake
  • (airavata) 01/01: initial research framework lahirujayathilake
• (airavata) branch cybershuttle-staging updated (e77eab862b -> fcb0c50670) dimuthuupe
  • (airavata) 05/10: update Makefiles and bump airavata python sdk to 2.0.5 dimuthuupe
  • (airavata) 03/10: refine agent.go, fix bugs dimuthuupe
  • (airavata) 09/10: bump python sdk version to 2.0.5.post2 dimuthuupe
  • (airavata) 07/10: update sdk and agent service to accep yml file and dependencies. dimuthuupe
  • (airavata) 06/10: fix bugs in python sdk after base image / api changes dimuthuupe
  • (airavata) 08/10: update notebooks dimuthuupe
  • (airavata) 10/10: make remote cell execution responsive. bump version to 2.0.6 dimuthuupe
  • (airavata) 01/10: point to same agent-communication.proto dimuthuupe
  • (airavata) 04/10: add kernel restart functionality to agent service and agent dimuthuupe
• (airavata) branch agent-framewok-refactoring updated: dynamic data mounts for different cs images lahirujayathilake
• (airavata) branch cybershuttle-staging updated: renamed the file to fix npm run build lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Authentication for Research Portal (#481) lahirujayathilake
• (airavata) branch cybershuttle-staging updated: configurable allowed origin for research service lahirujayathilake
• (airavata) branch cybershuttle-staging updated: fixed the thrift client issue, cannot reuse the client connection for multiple calls lahirujayathilake
• (airavata) branch cybershuttle-staging updated: rhub session impl and some refactoring lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Allow file tree exploring & handle rate limit error lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Backend integration with portal lahirujayathilake
• (airavata) branch cybershuttle-staging updated: Use StoragePath from Properties in AgentManagementHandler lahirujayathilake
• (airavata) branch cybershuttle-staging updated: File tree added to ProjectDetails.tsx lahirujayathilake
• (airavata) branch cybershuttle-staging updated: spawn containers with the given project, reattach to existing sessions, service updates, and data initializations lahirujayathilake
• (airavata) branch cybershuttle-staging updated: initialize user and changes to rhub service classes lahirujayathilake
• (airavata) branch cybershuttle-staging updated: disable authz token verification in dev mode lahirujayathilake
• (airavata) branch cybershuttle-staging updated: session entity impl and entity modifications lahirujayathilake
• (airavata) branch cybershuttle-staging updated: clone the repo in to the work directory and grant the right permissions lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated notebook lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: updated the notebook and docker files lahirujayathilake
• (airavata) branch cybershuttle-staging updated: jupyterhub instance to show sample notebooks lahirujayathilake
• (airavata) branch cybershuttle-staging updated (20745efd0e -> 1ce60a6253) lahirujayathilake
  • (airavata) 02/04: Basic API implementation working lahirujayathilake
  • (airavata) 03/04: Add support for ModelResource lahirujayathilake
  • (airavata) 04/04: Pull multiple resources lahirujayathilake
  • (airavata) 01/04: Setup complete lahirujayathilake
• (airavata) branch cybershuttle-staging updated: authz token filtering and extracting username for the hub lahirujayathilake
• (airavata) branch cybershuttle-staging updated: global exception handler and boiler template for spinning up a new JL cloning a git repo and mounting ro volume lahirujayathilake
• (airavata) branch cybershuttle-staging updated: relative dataset path for the spawner lahirujayathilake
• (airavata) branch cybershuttle-staging updated: research hub configurations and compose files lahirujayathilake
• (airavata) branch cybershuttle-staging updated: entity classes and structure for research framework lahirujayathilake
• (airavata) branch cybershuttle-staging updated: add research portal lahirujayathilake
• (airavata) branch cybershuttle-dev updated: move portal to research-framework lahirujayathilake
• (airavata) branch cybershuttle-dev updated: initial research framework lahirujayathilake
• (airavata) branch master updated: ide-integration docker-compose changes lahirujayathilake
• (airavata) branch cybershuttle-dev updated (45243c04e4 -> 22be98dcd9) lahirujayathilake
  • (airavata) 03/21: create devcontainer.json and integrate with docker-compose file. fix bugs. lahirujayathilake
  • (airavata) 04/21: updated devcontainer and compose for easy use in vscode lahirujayathilake
  • (airavata) 11/21: fix generated protos unused issue lahirujayathilake
  • (airavata) 18/21: migrate openjpa to hibernate, update pool and dbcp deps to pool2 and dbcp2. lahirujayathilake
  • (airavata) 14/21: simplify devcontainer. unify maven-compiler plugin version. lahirujayathilake
  • (airavata) 15/21: migrate javax.mail to jakarta.mail to fix email-monitor bug. exclude conflicting angus-mail dependency. add missing @Deprecated tags. lahirujayathilake
  • (airavata) 08/21: bump all jdk deps to 17. get devcontainer to working state. add launch.json for vscode integration. add openjpa runtimeoptimization tag to persistence.xml. bump mysql connector to 8.0.31. add dns tags to keystore generation script (browser https compatibility), move keystores to top-level and add build-time copy to project resources. fix Serializable warning in UserPK.java lahirujayathilake
  • (airavata) 05/21: add AF2Complex notebook lahirujayathilake
  • (airavata) 10/21: update rabbitmq and proto versions, fix proto path in agent-service lahirujayathilake
  • (airavata) 17/21: parametrize pom versions. add maven-enforcer rule for dependency convergence and fix version issues. lahirujayathilake
  • (airavata) 06/21: rename devcontainer to Airavata lahirujayathilake
  • (airavata) 20/21: fix issues with helix participant and job engine starter lahirujayathilake
  • (airavata) 19/21: get hibernate orm to validate against test db. manually specify catalog for conflicting entities. lahirujayathilake
  • (airavata) 12/21: fix pom issues when running in devcontainer lahirujayathilake
  • (airavata) 07/21: move docker-compose file to .devcontainer lahirujayathilake
  • (airavata) 21/21: cleanup code. add placeholders for job monitor email/pw in airavata-server.properties lahirujayathilake
  • (airavata) 09/21: change protobuf plugin to a maintained one lahirujayathilake
  • (airavata) 02/21: move self-signed certs to a single location lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: multi server jupyterhub config lahirujayathilake
• (airavata) branch agent-framewok-refactoring updated: jupyterhub config file to support ro:data and wr:code lahirujayathilake
• (airavata) branch cybershuttle-dev updated (5097dd7196 -> 45243c04e4) lahirujayathilake
  • (airavata) 03/03: jobmanager configs and included registry server properties for real-time monitor lahirujayathilake
  • (airavata) 01/03: bump version zookeeper and kafka lahirujayathilake
  • (airavata) 02/03: excluded logback from file service lahirujayathilake
• (airavata) 14/31: bump version to 0.0.16 add AlphaFold2 and Gaussian applications update realm from 10000000 -> default add GROMACS and AMBER to MD SDK lahirujayathilake
• (airavata) branch cybershuttle-dev updated (a3785536c7 -> 5097dd7196) lahirujayathilake
• (airavata) 29/31: updated the agent dependencies lahirujayathilake
• (airavata) 09/31: improve auth flow, add python code invocation, add plan crud apis and file ul/dl apis, reduce settings.ini deps, fix bugs lahirujayathilake
• (airavata) branch master updated: Changed the uploading file size in enveomics gateway eroma
• (airavata) 04/31: update data tar and analysis script lahirujayathilake
• (airavata) 30/31: gkeyll agent image and notebook sample lahirujayathilake
• (airavata) 13/31: fix bug in code execution, remove jupyter kernel start from agent add support to cold-start analysis agents reset changes to sftp_file_handling_client update notebooks remove verbose log from remote code execution separate python env creation and code execution steps. always return stdout+err for command/script executions lock agent to python 3.12 and update pyproject.toml update file listing and python execution cmds lahirujayathilake
• (airavata) 08/31: initial experiment sdk implementation lahirujayathilake
• (airavata) 03/31: temp commit to get cyberfaces meeting poc lahirujayathilake
• (airavata) 26/31: refine code flow in airavata_jupyter_magic. bump version to 1.0.5, update notebook, fix bugs lahirujayathilake
• (airavata) 17/31: refine Makefiles, move app-scripts to agent-framework/, fix bugs in agent.go and sample Dockerfile lahirujayathilake
• (airavata) 31/31: updated the gkeyll notebook script lahirujayathilake
• (airavata) 20/31: add type-hinting imports to __init__ files lahirujayathilake
• (airavata) 27/31: updated notebooks lahirujayathilake
• (airavata) 28/31: rename platform x86_64 -> amd64. fix issues in cyberfaces dockerfile. update notebooks. move environment files. lahirujayathilake
• Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
• (airavata) 10/31: venv support for agent, update notebooks, show tables as pandas df, update dir refs, fix bugs. lahirujayathilake

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