See <https://builds.apache.org/job/beam_PerformanceTests_Python/470/display/redirect?page=changes>
Changes: [klk] Clone source to a distinguished subdirectory of Jenkins workspace [ekirpichov] [BEAM-2682] Deletes AvroIOTransformTest [kenn] Add dep on Apache-licensed findbugs-annotations implementation [kenn] Make Java core SDK root dir NonNull by default [kenn] NonNull by default in sdk/coders [kenn] NonNull by default in sdk/annotations [kenn] NonNull by default in sdk/runners [kenn] NonNull by default in sdk/state [kenn] NonNull by default for sdk/testing [kenn] Ignore findbugs in AutoValue generated classes [kenn] NonNull by default in metrics ------------------------------------------ Started by timer [EnvInject] - Loading node environment variables. Building remotely on beam6 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/> Cloning the remote Git repository Cloning repository https://github.com/apache/beam.git > git init <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src> > # timeout=10 Fetching upstream changes from https://github.com/apache/beam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/apache/beam.git > +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/apache/beam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # > timeout=10 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10 Fetching upstream changes from https://github.com/apache/beam.git > git fetch --tags --progress https://github.com/apache/beam.git > +refs/heads/*:refs/remotes/origin/* > +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/* > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision 66fcda99c1e5902ff4d0981b887c70f7afe9380a (origin/master) Commit message: "This closes #4021: [BEAM-3081] Findbugs: NonNull by default" > git config core.sparsecheckout # timeout=10 > git checkout -f 66fcda99c1e5902ff4d0981b887c70f7afe9380a > git rev-list 49c3927905d606990ea1d36f1dea0a8c86c11f30 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [EnvInject] - Executing scripts and injecting environment variables after the SCM step. [EnvInject] - Injecting as environment variables the properties content SPARK_LOCAL_IP=127.0.0.1 [EnvInject] - Variables injected successfully. [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins7092191137035584442.sh + rm -rf PerfKitBenchmarker [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins2536388265763705820.sh + git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git Cloning into 'PerfKitBenchmarker'... [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins5098284960748762757.sh + pip install --user -r PerfKitBenchmarker/requirements.txt Requirement already satisfied: absl-py in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 14)) Requirement already satisfied: jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 15)) Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 16)) Requirement already satisfied: colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 17)) Requirement already satisfied: blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 18)) Requirement already satisfied: futures>=3.0.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 19)) Requirement already satisfied: PyYAML==3.12 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 20)) Requirement already satisfied: pint>=0.7 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 21)) Requirement already satisfied: numpy in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 22)) Requirement already satisfied: functools32 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 23)) Requirement already satisfied: contextlib2>=0.5.1 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 24)) Requirement already satisfied: six in /home/jenkins/.local/lib/python2.7/site-packages (from absl-py->-r PerfKitBenchmarker/requirements.txt (line 14)) Requirement already satisfied: MarkupSafe>=0.23 in /usr/local/lib/python2.7/dist-packages (from jinja2>=2.7->-r PerfKitBenchmarker/requirements.txt (line 15)) Requirement already satisfied: colorama; extra == "windows" in /usr/lib/python2.7/dist-packages (from colorlog[windows]==2.6.0->-r PerfKitBenchmarker/requirements.txt (line 17)) [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins5150615748050544937.sh + pip install --user -e 'sdks/python/[gcp,test]' Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/sdks/python> Requirement already satisfied: avro<2.0.0,>=1.8.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: crcmod<2.0,>=1.7 in /usr/lib/python2.7/dist-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: grpcio<2.0,>=1.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: httplib2<0.10,>=0.8 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: mock<3.0.0,>=1.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: oauth2client<4.0.0,>=2.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: protobuf<=3.3.0,>=3.2.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: pyyaml<4.0.0,>=3.12 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: six<1.11,>=1.9 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: typing<3.7.0,>=3.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: google-apitools<=0.5.11,>=0.5.10 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: google-cloud-bigquery==0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: pyhamcrest<2.0,>=1.9 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied: futures>=2.2.0 in /home/jenkins/.local/lib/python2.7/site-packages (from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev) Requirement already satisfied: enum34>=1.0.4 in /home/jenkins/.local/lib/python2.7/site-packages (from grpcio<2.0,>=1.0->apache-beam==2.3.0.dev) Requirement already satisfied: funcsigs>=1; python_version < "3.3" in /home/jenkins/.local/lib/python2.7/site-packages (from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev) Requirement already satisfied: pbr>=0.11 in /home/jenkins/.local/lib/python2.7/site-packages (from mock<3.0.0,>=1.0.1->apache-beam==2.3.0.dev) Requirement already satisfied: pyasn1>=0.1.7 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev) Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev) Requirement already satisfied: rsa>=3.1.4 in /home/jenkins/.local/lib/python2.7/site-packages (from oauth2client<4.0.0,>=2.0.1->apache-beam==2.3.0.dev) Requirement already satisfied: setuptools in /usr/lib/python2.7/dist-packages (from protobuf<=3.3.0,>=3.2.0->apache-beam==2.3.0.dev) Requirement already satisfied: googleapis-common-protos<2.0dev,>=1.5.2 in /home/jenkins/.local/lib/python2.7/site-packages (from proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0->apache-beam==2.3.0.dev) Requirement already satisfied: google-cloud-core<0.26dev,>=0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: google-auth-httplib2 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: google-auth<2.0.0dev,>=0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: google-gax<0.16dev,>=0.15.7 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: proto-google-cloud-pubsub-v1[grpc]<0.16dev,>=0.15.4 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: grpc-google-iam-v1<0.12dev,>=0.11.1 in /home/jenkins/.local/lib/python2.7/site-packages (from gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: cachetools>=2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-auth<2.0.0dev,>=0.4.0->google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: future<0.17dev,>=0.16.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: ply==3.8 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: requests<3.0dev,>=2.13.0 in /home/jenkins/.local/lib/python2.7/site-packages (from google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: idna<2.6,>=2.5 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: urllib3<1.22,>=1.21.1 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Requirement already satisfied: certifi>=2017.4.17 in /home/jenkins/.local/lib/python2.7/site-packages (from requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev) Installing collected packages: apache-beam Found existing installation: apache-beam 2.3.0.dev0 Uninstalling apache-beam-2.3.0.dev0: Successfully uninstalled apache-beam-2.3.0.dev0 Running setup.py develop for apache-beam Successfully installed apache-beam [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins8217889465526599964.sh + python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output 2017-10-21 00:00:37,112 3cb6c563 MainThread INFO Verbose logging to: /tmp/perfkitbenchmarker/runs/3cb6c563/pkb.log 2017-10-21 00:00:37,112 3cb6c563 MainThread INFO PerfKitBenchmarker version: v1.12.0-163-ge6dedae 2017-10-21 00:00:37,113 3cb6c563 MainThread INFO Flag values: --beam_sdk=python --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --project=apache-beam-testing --bigquery_table=beam_performance.pkb_results --official --dpb_log_level=INFO --benchmarks=beam_integration_benchmark 2017-10-21 00:00:37,465 3cb6c563 MainThread WARNING The key "flags" was not in the default config, but was in user overrides. This may indicate a typo. 2017-10-21 00:00:37,692 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Provisioning resources for benchmark beam_integration_benchmark 2017-10-21 00:00:37,695 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Preparing benchmark beam_integration_benchmark 2017-10-21 00:00:37,696 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Running: git clone https://github.com/apache/beam.git 2017-10-21 00:00:49,599 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Running: /home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true -Pdataflow-runner 2017-10-21 00:22:32,073 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Running benchmark beam_integration_benchmark 2017-10-21 00:22:32,322 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Running: python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/3cb6c563/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz 2017-10-21 00:32:32,342 3cb6c563 Thread-4 ERROR IssueCommand timed out after 600 seconds. Killing command "python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/3cb6c563/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz". 2017-10-21 00:32:32,349 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Ran python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/3cb6c563/beam/sdks/python/target/apache-beam-2.3.0.dev.tar.gz. Got return code (-9). STDOUT: running nosetests running egg_info writing requirements to apache_beam.egg-info/requires.txt writing apache_beam.egg-info/PKG-INFO writing top-level names to apache_beam.egg-info/top_level.txt writing dependency_links to apache_beam.egg-info/dependency_links.txt writing entry points to apache_beam.egg-info/entry_points.txt reading manifest file 'apache_beam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'apache_beam.egg-info/SOURCES.txt' STDERR: test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/3cb6c563/beam/sdks/python/apache_beam/io/gcp/gcsio.py:122: DeprecationWarning: object() takes no parameters super(GcsIO, cls).__new__(cls, storage_client)) /tmp/perfkitbenchmarker/runs/3cb6c563/beam/sdks/python/apache_beam/coders/typecoders.py:134: UserWarning: Using fallback coder for typehint: Any. warnings.warn('Using fallback coder for typehint: %r.' % typehint) 2017-10-21 00:32:32,349 3cb6c563 MainThread beam_integration_benchmark(1/1) ERROR Error during benchmark beam_integration_benchmark Traceback (most recent call last): File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 565, in RunBenchmark DoRunPhase(spec, collector, detailed_timer) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py",> line 478, in DoRunPhase samples = spec.BenchmarkRun(spec) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py",> line 159, in Run job_type=job_type) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py",> line 90, in SubmitJob assert retcode == 0, "Integration Test Failed." AssertionError: Integration Test Failed. 2017-10-21 00:32:32,422 3cb6c563 MainThread beam_integration_benchmark(1/1) INFO Cleaning up benchmark beam_integration_benchmark 2017-10-21 00:32:32,424 3cb6c563 MainThread beam_integration_benchmark(1/1) ERROR Benchmark 1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue. 2017-10-21 00:32:32,444 3cb6c563 MainThread INFO Benchmark run statuses: --------------------------------------------------------------- Name UID Status --------------------------------------------------------------- beam_integration_benchmark beam_integration_benchmark0 FAILED --------------------------------------------------------------- Success rate: 0.00% (0/1) 2017-10-21 00:32:32,444 3cb6c563 MainThread INFO Complete logs can be found at: /tmp/perfkitbenchmarker/runs/3cb6c563/pkb.log 2017-10-21 00:32:32,444 3cb6c563 MainThread INFO Completion statuses can be found at: /tmp/perfkitbenchmarker/runs/3cb6c563/completion_statuses.json Build step 'Execute shell' marked build as failure Not sending mail to unregistered user valen...@google.com Not sending mail to unregistered user ekirpic...@gmail.com Not sending mail to unregistered user k...@google.com