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https://issues.apache.org/jira/browse/BEAM-2774?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16280815#comment-16280815
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ASF GitHub Bot commented on BEAM-2774:
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arostamianfar opened a new pull request #4221: [BEAM-2774] Remove a test case
from VcfIO.
URL: https://github.com/apache/beam/pull/4221
Missing fields in samples is not consistently enforced by PyVCF.
Particularly, the cparse.pyx implementation ignores additional arguments
while the python implementation in parser.py throws an error.
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> Add I/O source for VCF files (python)
> -------------------------------------
>
> Key: BEAM-2774
> URL: https://issues.apache.org/jira/browse/BEAM-2774
> Project: Beam
> Issue Type: New Feature
> Components: sdk-py-core
> Reporter: Asha Rostamianfar
> Assignee: Miles Saul
> Original Estimate: 336h
> Remaining Estimate: 336h
>
> A new I/O source for reading (and eventually writing) VCF files [1] for
> Python. The design doc is available at
> https://docs.google.com/document/d/1jsdxOPALYYlhnww2NLURS8NKXaFyRSJrcGbEDpY9Lkw/edit
> [1] http://samtools.github.io/hts-specs/VCFv4.3.pdf
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