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https://issues.apache.org/jira/browse/BEAM-3850?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16399026#comment-16399026
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holdenk commented on BEAM-3850:
-------------------------------
Thanks for the issue!
So for some additional context for folks thinking about this, there is Java
support in Spatrk [https://github.com/LLNL/spark-hdf5] and Python support in
Dask [https://github.com/dask/dask/issues/963]
> I/O transform for HDH5 files with extension H5
> ----------------------------------------------
>
> Key: BEAM-3850
> URL: https://issues.apache.org/jira/browse/BEAM-3850
> Project: Beam
> Issue Type: New Feature
> Components: io-ideas, sdk-py-core
> Environment: Python (could be Java) if it does not work
> Reporter: Eila Arich-Landkof
> Assignee: Eugene Kirpichov
> Priority: Major
>
> Following the great summit today, I would like to ask for I/O transform for
> H5 file in python. If impossible, Java will work as well.
> The HDF5 group is very accessible: [https://support.hdfgroup.org/HDF5/]
> Example for H5 file can be found @ Mount Sinai Maayan lab:
> [https://amp.pharm.mssm.edu/archs4/download.html]
> I am using it as part of Oriel Research genomic and clinical processing
> workflow.
> I am available for any question.
>
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