See <https://builds.apache.org/job/beam_PerformanceTests_Python/1170/display/redirect?page=changes>
Changes: [robertwb] Suppress some (fatal) warnings in schemas. [tgroh] Remove SdkHarnessClientControlService [swegner] [BEAM-3249] Clean-up and use shaded test jars, removing [swegner] Resolve private PipelineOptions conflicts for example tests. [tgroh] Add a Test for Length Prefix between Coders [robertwb] Allow manual specification of external address for ULR. [robertwb] Infer all coders before passing to runner API. [robertwb] Bugfix changes from apache/beam#4811 [ehudm] Fix performance regression in FileBasedSink. [aromanenko.dev] [BEAM-3484] Fix split issue in HadoopInputFormatIOIT [ehudm] Address review comments and lint warnings. [tgroh] Remove Unused WatermarkManager Method [robertwb] [BEAM-3812] Avoid pickling composite transforms. [robertwb] Fix PTransformOverloads that were relying on pickling. [herohde] Add pubsub to Go maven build [aaltay] [BEAM-4093] Support Python ValidatesRunner test in streaming (#5147) [tgroh] Stop taking the whole result in WatermarkManager ------------------------------------------ [...truncated 2.48 KB...] apache-beam 2.5.0.dev0 requires pytz>=2018.3, which is not installed. apache-beam 2.5.0.dev0 has requirement grpcio<2,>=1.8, but you'll have grpcio 1.3.5 which is incompatible. [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins1849959622120425169.sh + git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git Cloning into 'PerfKitBenchmarker'... [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins4864174822248549737.sh + .env/bin/pip install -r PerfKitBenchmarker/requirements.txt Requirement already satisfied: absl-py in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 14)) (0.1.3) Requirement already satisfied: jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 15)) (2.8) Requirement already satisfied: setuptools in ./.env/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 16)) (39.0.1) Requirement already satisfied: colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 17)) (2.6.0) Requirement already satisfied: blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 18)) (1.4) Requirement already satisfied: futures>=3.0.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 19)) (3.1.1) Requirement already satisfied: PyYAML==3.12 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 20)) (3.12) Requirement already satisfied: pint>=0.7 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 21)) (0.7.2) Collecting numpy==1.13.3 (from -r PerfKitBenchmarker/requirements.txt (line 22)) Using cached https://files.pythonhosted.org/packages/eb/be/737f3df5806192ac4096e549e48c8c76cfaa2fb880a1c62a7bb085adaa9b/numpy-1.13.3-cp27-cp27mu-manylinux1_x86_64.whl Requirement already satisfied: functools32 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 23)) (3.2.3.post2) Requirement already satisfied: contextlib2>=0.5.1 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 24)) (0.5.4) Requirement already satisfied: pywinrm in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 25)) (0.2.2) Requirement already satisfied: six in /home/jenkins/.local/lib/python2.7/site-packages (from absl-py->-r PerfKitBenchmarker/requirements.txt (line 14)) (1.11.0) Requirement already satisfied: MarkupSafe in /usr/local/lib/python2.7/dist-packages (from jinja2>=2.7->-r PerfKitBenchmarker/requirements.txt (line 15)) (0.23) Requirement already satisfied: colorama; 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platform_python_implementation != "PyPy" in /home/jenkins/.local/lib/python2.7/site-packages (from cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (1.11.2) Requirement already satisfied: enum34; python_version < "3" in /home/jenkins/.local/lib/python2.7/site-packages (from cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (1.1.6) Requirement already satisfied: asn1crypto>=0.21.0 in /home/jenkins/.local/lib/python2.7/site-packages (from cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (0.23.0) Requirement already satisfied: ipaddress; python_version < "3" in /usr/local/lib/python2.7/dist-packages (from cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (1.0.19) Requirement already satisfied: pycparser in /home/jenkins/.local/lib/python2.7/site-packages (from cffi>=1.7; platform_python_implementation != "PyPy"->cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25)) (2.18) cheetah 2.4.4 requires Markdown>=2.0.1, which is not installed. apache-beam 2.5.0.dev0 requires hdfs<3.0.0,>=2.1.0, which is not installed. apache-beam 2.5.0.dev0 requires pytz>=2018.3, which is not installed. apache-beam 2.5.0.dev0 has requirement grpcio<2,>=1.8, but you'll have grpcio 1.3.5 which is incompatible. Installing collected packages: numpy Found existing installation: numpy 1.11.3 Not uninstalling numpy at /home/jenkins/.local/lib/python2.7/site-packages, outside environment <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env> Can't uninstall 'numpy'. No files were found to uninstall. Successfully installed numpy-1.13.3 [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins3744651806402235263.sh + .env/bin/pip install -e 'src/sdks/python/[gcp,test]' Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python> Requirement already satisfied: avro<2.0.0,>=1.8.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (1.8.2) Requirement already satisfied: crcmod<2.0,>=1.7 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (1.7) Requirement already satisfied: dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.2.6) Collecting grpcio<2,>=1.8 (from apache-beam==2.5.0.dev0) Using cached https://files.pythonhosted.org/packages/0d/54/b647a6323be6526be27b2c90bb042769f1a7a6e59bd1a5f2eeb795bfece4/grpcio-1.11.0-cp27-cp27mu-manylinux1_x86_64.whl Collecting hdfs<3.0.0,>=2.1.0 (from apache-beam==2.5.0.dev0) Requirement already satisfied: httplib2<0.10,>=0.8 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.9.2) Requirement already satisfied: mock<3.0.0,>=1.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (2.0.0) Requirement already satisfied: oauth2client<5,>=2.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (3.0.0) Requirement already satisfied: protobuf<4,>=3.5.0.post1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (3.5.0.post1) Collecting pytz>=2018.3 (from apache-beam==2.5.0.dev0) Using cached https://files.pythonhosted.org/packages/dc/83/15f7833b70d3e067ca91467ca245bae0f6fe56ddc7451aa0dc5606b120f2/pytz-2018.4-py2.py3-none-any.whl Requirement already satisfied: pyyaml<4.0.0,>=3.12 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (3.12) Requirement already satisfied: pyvcf<0.7.0,>=0.6.8 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.6.8) Requirement already satisfied: six<1.12,>=1.9 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (1.11.0) Requirement already satisfied: typing<3.7.0,>=3.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (3.6.2) Requirement already satisfied: futures<4.0.0,>=3.1.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (3.1.1) Requirement already satisfied: google-apitools<=0.5.20,>=0.5.18 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.5.20) Requirement already satisfied: proto-google-cloud-datastore-v1<=0.90.4,>=0.90.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.90.4) Requirement already satisfied: googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (7.0.1) Requirement already satisfied: google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.26.0) Requirement already satisfied: proto-google-cloud-pubsub-v1==0.15.4 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.15.4) Requirement already satisfied: google-cloud-bigquery==0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (0.25.0) Collecting nose>=1.3.7 (from apache-beam==2.5.0.dev0) Using cached https://files.pythonhosted.org/packages/99/4f/13fb671119e65c4dce97c60e67d3fd9e6f7f809f2b307e2611f4701205cb/nose-1.3.7-py2-none-any.whl Requirement already satisfied: pyhamcrest<2.0,>=1.9 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.5.0.dev0) (1.9.0) Requirement already satisfied: enum34>=1.0.4 in /home/jenkins/.local/lib/python2.7/site-packages (from grpcio<2,>=1.8->apache-beam==2.5.0.dev0) (1.1.6) Requirement already satisfied: requests>=2.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from hdfs<3.0.0,>=2.1.0->apache-beam==2.5.0.dev0) (2.18.1) Requirement already satisfied: docopt in /usr/local/lib/python2.7/dist-packages (from hdfs<3.0.0,>=2.1.0->apache-beam==2.5.0.dev0) (0.6.2) Requirement already satisfied: funcsigs>=1; 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Installing collected packages: grpcio, hdfs, pytz, nose, apache-beam Found existing installation: grpcio 1.3.5 Not uninstalling grpcio at /home/jenkins/.local/lib/python2.7/site-packages, outside environment <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env> Can't uninstall 'grpcio'. No files were found to uninstall. Found existing installation: apache-beam 2.5.0.dev0 Not uninstalling apache-beam at /home/jenkins/jenkins-slave/workspace/beam_PerformanceTests_TextIOIT/src/sdks/python, outside environment <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env> Can't uninstall 'apache-beam'. No files were found to uninstall. Running setup.py develop for apache-beam Successfully installed apache-beam grpcio-1.11.0 hdfs-2.1.0 nose-1.3.7 pytz-2018.4 [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins4460235137423653645.sh + .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.pkb_results --temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/> --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output 2018-04-20 06:07:51,421 8a5ef984 MainThread INFO Verbose logging to: <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/runs/8a5ef984/pkb.log> 2018-04-20 06:07:51,421 8a5ef984 MainThread INFO PerfKitBenchmarker version: v1.12.0-507-g86fc673 2018-04-20 06:07:51,422 8a5ef984 MainThread INFO Flag values: --beam_sdk=python --temp_dir=<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/> --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --project=apache-beam-testing --bigquery_table=beam_performance.pkb_results --official --dpb_log_level=INFO --benchmarks=beam_integration_benchmark 2018-04-20 06:07:51,764 8a5ef984 MainThread WARNING The key "flags" was not in the default config, but was in user overrides. This may indicate a typo. 2018-04-20 06:07:51,765 8a5ef984 MainThread INFO Initializing the edw service decoder 2018-04-20 06:07:51,958 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Provisioning resources for benchmark beam_integration_benchmark 2018-04-20 06:07:51,961 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Preparing benchmark beam_integration_benchmark 2018-04-20 06:07:51,961 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Running: git clone https://github.com/apache/beam.git 2018-04-20 06:08:22,595 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Running: /home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true -Pdataflow-runner 2018-04-20 06:17:05,353 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Running benchmark beam_integration_benchmark 2018-04-20 06:17:05,470 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Running: python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/runs/8a5ef984/beam/sdks/python/target/apache-beam-2.5.0.dev0.tar.gz> 2018-04-20 06:17:05,746 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Ran: {python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/runs/8a5ef984/beam/sdks/python/target/apache-beam-2.5.0.dev0.tar.gz}> ReturnCode:1 STDOUT: STDERR: /usr/local/lib/python2.7/dist-packages/setuptools/dist.py:397: UserWarning: Normalizing '2.5.0.dev' to '2.5.0.dev0' normalized_version, usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: setup.py --help [cmd1 cmd2 ...] or: setup.py --help-commands or: setup.py cmd --help error: invalid command 'nosetests' 2018-04-20 06:17:05,746 8a5ef984 MainThread beam_integration_benchmark(1/1) ERROR Error during benchmark beam_integration_benchmark Traceback (most recent call last): File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 646, in RunBenchmark DoRunPhase(spec, collector, detailed_timer) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 526, in DoRunPhase samples = spec.BenchmarkRun(spec) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py";,> line 159, in Run job_type=job_type) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py";,> line 90, in SubmitJob assert retcode == 0, "Integration Test Failed." AssertionError: Integration Test Failed. 2018-04-20 06:17:05,764 8a5ef984 MainThread beam_integration_benchmark(1/1) INFO Cleaning up benchmark beam_integration_benchmark 2018-04-20 06:17:05,766 8a5ef984 MainThread beam_integration_benchmark(1/1) ERROR Exception running benchmark Traceback (most recent call last): File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 780, in RunBenchmarkTask RunBenchmark(spec, collector) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 646, in RunBenchmark DoRunPhase(spec, collector, detailed_timer) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 526, in DoRunPhase samples = spec.BenchmarkRun(spec) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py";,> line 159, in Run job_type=job_type) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py";,> line 90, in SubmitJob assert retcode == 0, "Integration Test Failed." AssertionError: Integration Test Failed. 2018-04-20 06:17:05,767 8a5ef984 MainThread beam_integration_benchmark(1/1) ERROR Benchmark 1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue. 2018-04-20 06:17:05,800 8a5ef984 MainThread INFO Benchmark run statuses: --------------------------------------------------------------------------------- Name UID Status Failed Substatus --------------------------------------------------------------------------------- beam_integration_benchmark beam_integration_benchmark0 FAILED --------------------------------------------------------------------------------- Success rate: 0.00% (0/1) 2018-04-20 06:17:05,800 8a5ef984 MainThread INFO Complete logs can be found at: <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/runs/8a5ef984/pkb.log> 2018-04-20 06:17:05,801 8a5ef984 MainThread INFO Completion statuses can be found at: <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/runs/8a5ef984/completion_statuses.json> Build step 'Execute shell' marked build as failure Not sending mail to unregistered user hero...@google.com Not sending mail to unregistered user k...@google.com Not sending mail 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