Ahmet Altay created BEAM-4749:
---------------------------------

             Summary: fastavro breaks macos tests
                 Key: BEAM-4749
                 URL: https://issues.apache.org/jira/browse/BEAM-4749
             Project: Beam
          Issue Type: Improvement
          Components: sdk-py-core
            Reporter: Ahmet Altay
            Assignee: Chamikara Jayalath


Recent addition of the fastavro dependency is breaking python linter in macos. 
At least for some cases, because it requires a compiler.

Could we optionally depend on fastavro, and fallback to regular avro package?

 

Log:

*> Task :beam-sdks-python:lintPy27*

ERROR: invocation failed (exit code 1), logfile: 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/log/py27-lint-2.log

ERROR: actionid: py27-lint

msg: installpkg

cmdargs: 
['/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python', 
'/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/pip', 
'install', 
'/Users/relax/beam-gradle/beam/sdks/python/target/.tox/dist/apache-beam-2.6.0.dev0.zip[test]']

 

Processing ./target/.tox/dist/apache-beam-2.6.0.dev0.zip

Collecting avro<2.0.0,>=1.8.1 (from apache-beam==2.6.0.dev0)

Collecting crcmod<2.0,>=1.7 (from apache-beam==2.6.0.dev0)

Collecting dill==0.2.6 (from apache-beam==2.6.0.dev0)

Collecting fastavro==0.19.7 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/a7/0a/b08ba5cef63c675e8442c2bf1cbcef90c8b9f824be2202d492f0cedb0913/fastavro-0.19.7.tar.gz]

Collecting grpcio<2,>=1.8 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/66/89/4a90caabd51c17686cbb48a9bbe8c592c4be929c0d2542d2ffde76b0d671/grpcio-1.13.0-cp27-cp27m-macosx_10_12_x86_64.whl]

Collecting hdfs<3.0.0,>=2.1.0 (from apache-beam==2.6.0.dev0)

Collecting httplib2<=0.11.3,>=0.8 (from apache-beam==2.6.0.dev0)

Collecting mock<3.0.0,>=1.0.1 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/e6/35/f187bdf23be87092bd0f1200d43d23076cee4d0dec109f195173fd3ebc79/mock-2.0.0-py2.py3-none-any.whl]

Collecting oauth2client<5,>=2.0.1 (from apache-beam==2.6.0.dev0)

  Using cached 
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Collecting protobuf<4,>=3.5.0.post1 (from apache-beam==2.6.0.dev0)

  Using cached 
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Collecting pytz<=2018.4,>=2018.3 (from apache-beam==2.6.0.dev0)

  Using cached 
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Collecting pyyaml<4.0.0,>=3.12 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz]

Collecting pyvcf<0.7.0,>=0.6.8 (from apache-beam==2.6.0.dev0)

Requirement already satisfied: six<1.12,>=1.9 in 
./target/.tox/py27-lint/lib/python2.7/site-packages (from 
apache-beam==2.6.0.dev0) (1.11.0)

Collecting typing<3.7.0,>=3.6.0 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/0d/4d/4e5985d075d241d686a1663fa1f88b61d544658d08c1375c7c6aac32afc3/typing-3.6.4-py2-none-any.whl]

Collecting futures<4.0.0,>=3.1.1 (from apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/2d/99/b2c4e9d5a30f6471e410a146232b4118e697fa3ffc06d6a65efde84debd0/futures-3.2.0-py2-none-any.whl]

Requirement already satisfied: future<1.0.0,>=0.16.0 in 
./target/.tox/py27-lint/lib/python2.7/site-packages (from 
apache-beam==2.6.0.dev0) (0.16.0)

Collecting nose>=1.3.7 (from apache-beam==2.6.0.dev0)

  Using cached 
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Collecting pyhamcrest<2.0,>=1.9 (from apache-beam==2.6.0.dev0)

  Using cached 
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Requirement already satisfied: setuptools>=18.0 in 
./target/.tox/py27-lint/lib/python2.7/site-packages (from 
fastavro==0.19.7->apache-beam==2.6.0.dev0) (39.2.0)

Requirement already satisfied: enum34>=1.0.4 in 
./target/.tox/py27-lint/lib/python2.7/site-packages (from 
grpcio<2,>=1.8->apache-beam==2.6.0.dev0) (1.1.6)

Collecting docopt (from hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

Collecting requests>=2.7.0 (from hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/65/47/7e02164a2a3db50ed6d8a6ab1d6d60b69c4c3fdf57a284257925dfc12bda/requests-2.19.1-py2.py3-none-any.whl]

Collecting pbr>=0.11 (from mock<3.0.0,>=1.0.1->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/b3/5d/c196041ffdf3e34ba206db6d61d1f893a75e1f3435699ade9bd65e089a3d/pbr-4.0.4-py2.py3-none-any.whl]

Collecting funcsigs>=1; python_version < "3.3" (from 
mock<3.0.0,>=1.0.1->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/69/cb/f5be453359271714c01b9bd06126eaf2e368f1fddfff30818754b5ac2328/funcsigs-1.0.2-py2.py3-none-any.whl]

Collecting rsa>=3.1.4 (from oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

  Using cached 
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Collecting pyasn1>=0.1.7 (from oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

  Using cached 
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Collecting pyasn1-modules>=0.0.5 (from 
oauth2client<5,>=2.0.1->apache-beam==2.6.0.dev0)

  Using cached 
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Collecting chardet<3.1.0,>=3.0.2 (from 
requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl]

Collecting idna<2.8,>=2.5 (from 
requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl]

Collecting urllib3<1.24,>=1.21.1 (from 
requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl]

Collecting certifi>=2017.4.17 (from 
requests>=2.7.0->hdfs<3.0.0,>=2.1.0->apache-beam==2.6.0.dev0)

  Using cached 
[https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl]

Building wheels for collected packages: apache-beam, fastavro, pyyaml

  Running setup.py bdist_wheel for apache-beam: started

  Running setup.py bdist_wheel for apache-beam: finished with status 'done'

  Stored in directory: 
/Users/relax/Library/Caches/pip/wheels/a3/18/08/60ce57e27e8b04460419c9463b9b6da19a8aab9fb64afc612f

  Running setup.py bdist_wheel for fastavro: started

  Running setup.py bdist_wheel for fastavro: finished with status 'error'

  Complete output from command 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python -u 
-c "import setuptools, 
tokenize;__file__='/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/setup.py';f=getattr(tokenize,
 'open', open)(__file__);code=f.read().replace('\r\n', 
'\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d 
/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-wheel-p6UGao 
--python-tag cp27:

  running bdist_wheel

  running build

  running build_py

  creating build

  creating build/lib.macosx-10.4-x86_64-2.7

  creating build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_schema_common.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_schema_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/write.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_write_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_read_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_read_common.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_validate_common.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_validation_py.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/six.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/_timezone.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/__main__.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/const.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/schema.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/read.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  copying fastavro/validation.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

  running build_ext

  building 'fastavro._read' extension

  creating build/temp.macosx-10.4-x86_64-2.7

  creating build/temp.macosx-10.4-x86_64-2.7/fastavro

  gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -Os -Wall 
-Wstrict-prototypes -I/Library/GoogleCorpSupport/Python/2.7/include/python2.7 
-c fastavro/_read.c -o build/temp.macosx-10.4-x86_64-2.7/fastavro/_read.o

  xcrun: error: invalid active developer path 
(/Library/Developer/CommandLineTools), missing xcrun at: 
/Library/Developer/CommandLineTools/usr/bin/xcrun

  error: command 'gcc' failed with exit status 1

  

  ----------------------------------------

  Failed building wheel for fastavro

  Running setup.py clean for fastavro

  Running setup.py bdist_wheel for pyyaml: started

  Running setup.py bdist_wheel for pyyaml: finished with status 'done'

  Stored in directory: 
/Users/relax/Library/Caches/pip/wheels/03/05/65/bdc14f2c6e09e82ae3e0f13d021e1b6b2481437ea2f207df3f

Successfully built apache-beam pyyaml

Failed to build fastavro

Installing collected packages: avro, crcmod, dill, fastavro, futures, grpcio, 
docopt, chardet, idna, urllib3, certifi, requests, hdfs, httplib2, pbr, 
funcsigs, mock, pyasn1, rsa, pyasn1-modules, oauth2client, protobuf, pytz, 
pyyaml, pyvcf, typing, nose, pyhamcrest, apache-beam

  Running setup.py install for fastavro: started

    Running setup.py install for fastavro: finished with status 'error'

    Complete output from command 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python -u 
-c "import setuptools, 
tokenize;__file__='/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/setup.py';f=getattr(tokenize,
 'open', open)(__file__);code=f.read().replace('\r\n', 
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record 
/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-record-sAEfXi/install-record.txt
 --single-version-externally-managed --compile --install-headers 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/include/site/python2.7/fastavro:

    running install

    running build

    running build_py

    creating build

    creating build/lib.macosx-10.4-x86_64-2.7

    creating build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_schema_common.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_schema_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/write.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_write_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_read_py.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_read_common.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_validate_common.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_validation_py.py -> 
build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/six.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/_timezone.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/__main__.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/const.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/schema.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/read.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    copying fastavro/validation.py -> build/lib.macosx-10.4-x86_64-2.7/fastavro

    running build_ext

    building 'fastavro._read' extension

    creating build/temp.macosx-10.4-x86_64-2.7

    creating build/temp.macosx-10.4-x86_64-2.7/fastavro

    gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -Os -Wall 
-Wstrict-prototypes -I/Library/GoogleCorpSupport/Python/2.7/include/python2.7 
-c fastavro/_read.c -o build/temp.macosx-10.4-x86_64-2.7/fastavro/_read.o

    xcrun: error: invalid active developer path 
(/Library/Developer/CommandLineTools), missing xcrun at: 
/Library/Developer/CommandLineTools/usr/bin/xcrun

    error: command 'gcc' failed with exit status 1

    

    ----------------------------------------

Command 
"/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python -u 
-c "import setuptools, 
tokenize;__file__='/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/setup.py';f=getattr(tokenize,
 'open', open)(__file__);code=f.read().replace('\r\n', 
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record 
/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-record-sAEfXi/install-record.txt
 --single-version-externally-managed --compile --install-headers 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/include/site/python2.7/fastavro"
 failed with error code 1 in 
/private/var/folders/7p/4pkdvcd52b36bzwq9lts1frh000r4y/T/pip-install-WX5Ntf/fastavro/

 

py27-lint installed: 
astroid==1.6.5,avro==1.8.2,backports.functools-lru-cache==1.5,configparser==3.5.0,crcmod==1.7,dill==0.2.6,enum34==1.1.6,flake8==3.5.0,future==0.16.0,isort==4.2.15,lazy-object-proxy==1.3.1,mccabe==0.6.1,pycodestyle==2.3.1,pyflakes==1.6.0,pylint==1.7.2,singledispatch==3.4.0.3,six==1.11.0,wrapt==1.10.11

___________________________________ summary ____________________________________

ERROR:   py27-lint: InvocationError for command 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/python 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/bin/pip install 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/dist/apache-beam-2.6.0.dev0.zip[test]
 (see 
/Users/relax/beam-gradle/beam/sdks/python/target/.tox/py27-lint/log/py27-lint-2.log)
 (exited with code 1)
 



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