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https://issues.apache.org/jira/browse/CASSANDRA-3065?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13088118#comment-13088118
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Jonathan Ellis commented on CASSANDRA-3065:
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What does sstable2json say?
What happens if you switch from mmap i/o to buffered?
What happens if you run scrub?
> Major file corruption after running nodetool cleanup
> ----------------------------------------------------
>
> Key: CASSANDRA-3065
> URL: https://issues.apache.org/jira/browse/CASSANDRA-3065
> Project: Cassandra
> Issue Type: Bug
> Components: Core
> Affects Versions: 0.8.3
> Reporter: Benjamin Schrauwen
>
> After running nodetool cleanup on two of the nodes in my 4 node cluster,
> almost all SSTables on those those machine got corrupted. I am not able to
> read them anymore with sstable2json, and the cassandra daemon is repetitively
> throwing:
> ERROR [ReadStage:11] 2011-08-20 04:44:46,846 AbstractCassandraDaemon.java
> (line 139) Fatal exception in thread Thread[ReadStage:11,5,main]
> java.lang.RuntimeException: java.lang.IndexOutOfBoundsException
> at
> org.apache.cassandra.utils.WrappedRunnable.run(WrappedRunnable.java:34)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:619)
> Caused by: java.lang.IndexOutOfBoundsException
> at java.nio.Buffer.checkIndex(Buffer.java:514)
> at java.nio.DirectByteBuffer.get(DirectByteBuffer.java:209)
> at
> org.apache.cassandra.io.util.MappedFileDataInput.read(MappedFileDataInput.java:104)
> at java.io.InputStream.read(InputStream.java:154)
> at
> org.apache.cassandra.io.util.AbstractDataInput.readInt(AbstractDataInput.java:196)
> at
> org.apache.cassandra.io.sstable.IndexHelper.skipIndex(IndexHelper.java:61)
> at
> org.apache.cassandra.db.columniterator.SimpleSliceReader.<init>(SimpleSliceReader.java:58)
> at
> org.apache.cassandra.db.columniterator.SSTableSliceIterator.createReader(SSTableSliceIterator.java:91)
> at
> org.apache.cassandra.db.columniterator.SSTableSliceIterator.<init>(SSTableSliceIterator.java:67)
> at
> org.apache.cassandra.db.filter.SliceQueryFilter.getSSTableColumnIterator(SliceQueryFilter.java:66)
> at
> org.apache.cassandra.db.filter.QueryFilter.getSSTableColumnIterator(QueryFilter.java:80)
> at
> org.apache.cassandra.db.ColumnFamilyStore.getTopLevelColumns(ColumnFamilyStore.java:1314)
> at
> org.apache.cassandra.db.ColumnFamilyStore.cacheRow(ColumnFamilyStore.java:1181)
> at
> org.apache.cassandra.db.ColumnFamilyStore.getColumnFamily(ColumnFamilyStore.java:1221)
> at
> org.apache.cassandra.db.ColumnFamilyStore.getColumnFamily(ColumnFamilyStore.java:1168)
> at org.apache.cassandra.db.Table.getRow(Table.java:385)
> at
> org.apache.cassandra.db.SliceByNamesReadCommand.getRow(SliceByNamesReadCommand.java:58)
> at
> org.apache.cassandra.service.StorageProxy$LocalReadRunnable.runMayThrow(StorageProxy.java:641)
> at
> org.apache.cassandra.utils.WrappedRunnable.run(WrappedRunnable.java:30)
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