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https://issues.apache.org/jira/browse/CASSANDRA-6614?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13881372#comment-13881372
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Ravi Prasad commented on CASSANDRA-6614:
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Seeing this too, while upgrading from 1.2.9 to 2.0.4. As Jason mentioned, found 
this subsides, once all the nodes in the cluster are upgraded or on same schema.

> 2 hours loop flushing+compacting 
> system/{schema_keyspaces,schema_columnfamilies,schema_columns} when upgrading
> --------------------------------------------------------------------------------------------------------------
>
>                 Key: CASSANDRA-6614
>                 URL: https://issues.apache.org/jira/browse/CASSANDRA-6614
>             Project: Cassandra
>          Issue Type: Bug
>          Components: Core
>         Environment: ubuntu 12.04
>            Reporter: Cyril Scetbon
>
> It happens when we upgrade one node to 1.2.13 on a 1.2.2 cluster 
> see http://pastebin.com/YZKUQLXz
> If I grep for only InternalResponseStage logs I get 
> http://pastebin.com/htnXZCiT which always displays same account of ops and 
> serialized/live bytes per column family.
> When I upgrade one node from 1.2.2 to 1.2.13, for 2h I get the previous 
> messages with a raise of CPU (as it flushes and compacts continually) on all 
> nodes 
> http://picpaste.com/pics/Screen_Shot_2014-01-24_at_09.18.50-ggcCDVqd.1390587562.png
> After that, everything is fine and I can upgrade other nodes without any 
> raise of cpus load. when I start the upgrade, the more nodes I upgrade at the 
> same time (at the beginning), the higher the cpu load is 
> http://picpaste.com/pics/Screen_Shot_2014-01-23_at_17.45.56-I3fdEQ2T.1390587597.png



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