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from 85c6427a1 Add code of conduct
new 49d542fc0 Update to commons RNG 1.5
new 8dfca662f Update git ignore to recursively ignore build files
new bc9e8bd27 Update fixed seed test
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new e59397ba1 Update to CP 54
new 8d4381b75 Drop junit 5.7.2 for 5.9.0 in commons parent
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new 7b18e4f67 Reorder properties to match commons RNG parent.
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Summary of changes:
.gitignore | 12 +-
.travis.yml | 38 ------
README.md | 6 +-
commons-math-core/pom.xml | 3 +-
.../commons/math4/core/jdkmath/AccurateMath.java | 16 ---
.../math4/examples/kmeans/image/StandAlone.java | 16 +--
commons-math-examples/pom.xml | 45 +------
commons-math-legacy-core/pom.xml | 3 +-
.../apache/commons/math4/legacy/core/Field.java | 1 -
.../apache/commons/math4/legacy/core/dfp/Dfp.java | 10 --
.../commons/math4/legacy/core/dfp/DfpDec.java | 2 -
.../commons/math4/legacy/core/dfp/DfpField.java | 8 --
.../commons/math4/legacy/core/dfp/DfpMath.java | 11 --
.../core/ExtendedFieldElementAbstractTest.java | 1 -
.../commons/math4/legacy/core/MathArraysTest.java | 1 -
.../commons/math4/legacy/core/dfp/Decimal10.java | 1 -
.../commons/math4/legacy/core/dfp/DfpDecTest.java | 1 -
.../commons/math4/legacy/core/dfp/DfpMathTest.java | 1 -
.../commons/math4/legacy/core/dfp/DfpTest.java | 1 -
.../legacy/core/jdkmath/AccurateMathTest.java | 4 -
commons-math-legacy-exception/pom.xml | 3 +-
.../legacy/exception/MathArithmeticException.java | 1 -
.../exception/MathIllegalArgumentException.java | 1 -
.../exception/MathIllegalStateException.java | 1 -
.../MathUnsupportedOperationException.java | 1 -
.../legacy/exception/NotANumberException.java | 1 -
.../legacy/exception/util/DummyLocalizable.java | 1 -
.../exception/util/ExceptionContextProvider.java | 1 -
.../exception/util/LocalizedFormatsTest.java | 3 -
commons-math-legacy/pom.xml | 4 +-
.../math4/legacy/analysis/FunctionUtils.java | 9 --
.../analysis/MultivariateMatrixFunction.java | 1 -
.../analysis/MultivariateVectorFunction.java | 1 -
.../legacy/analysis/UnivariateMatrixFunction.java | 1 -
.../legacy/analysis/UnivariateVectorFunction.java | 1 -
.../analysis/differentiation/DSCompiler.java | 48 -------
.../differentiation/DerivativeStructure.java | 13 +-
.../FiniteDifferencesDifferentiator.java | 10 --
.../analysis/differentiation/GradientFunction.java | 2 -
.../analysis/differentiation/JacobianFunction.java | 2 -
.../MultivariateDifferentiableVectorFunction.java | 1 -
.../analysis/differentiation/SparseGradient.java | 9 --
.../UnivariateDifferentiableMatrixFunction.java | 1 -
.../UnivariateDifferentiableVectorFunction.java | 1 -
.../UnivariateFunctionDifferentiator.java | 1 -
.../UnivariateMatrixFunctionDifferentiator.java | 1 -
.../UnivariateVectorFunctionDifferentiator.java | 1 -
.../math4/legacy/analysis/function/Acos.java | 1 -
.../math4/legacy/analysis/function/Acosh.java | 1 -
.../math4/legacy/analysis/function/Asin.java | 1 -
.../math4/legacy/analysis/function/Asinh.java | 1 -
.../math4/legacy/analysis/function/Atan.java | 1 -
.../math4/legacy/analysis/function/Atanh.java | 1 -
.../math4/legacy/analysis/function/Cbrt.java | 1 -
.../math4/legacy/analysis/function/Constant.java | 1 -
.../math4/legacy/analysis/function/Cos.java | 1 -
.../math4/legacy/analysis/function/Cosh.java | 1 -
.../math4/legacy/analysis/function/Exp.java | 1 -
.../math4/legacy/analysis/function/Expm1.java | 1 -
.../math4/legacy/analysis/function/Gaussian.java | 3 -
.../analysis/function/HarmonicOscillator.java | 2 -
.../math4/legacy/analysis/function/Identity.java | 1 -
.../math4/legacy/analysis/function/Inverse.java | 1 -
.../math4/legacy/analysis/function/Log.java | 1 -
.../math4/legacy/analysis/function/Log10.java | 1 -
.../math4/legacy/analysis/function/Log1p.java | 1 -
.../math4/legacy/analysis/function/Logistic.java | 1 -
.../math4/legacy/analysis/function/Logit.java | 1 -
.../math4/legacy/analysis/function/Minus.java | 1 -
.../math4/legacy/analysis/function/Power.java | 1 -
.../math4/legacy/analysis/function/Sigmoid.java | 5 -
.../math4/legacy/analysis/function/Sin.java | 1 -
.../math4/legacy/analysis/function/Sinc.java | 6 -
.../math4/legacy/analysis/function/Sinh.java | 1 -
.../math4/legacy/analysis/function/Sqrt.java | 1 -
.../math4/legacy/analysis/function/Tan.java | 1 -
.../math4/legacy/analysis/function/Tanh.java | 1 -
.../analysis/integration/MidPointIntegrator.java | 4 +-
.../analysis/integration/RombergIntegrator.java | 4 +-
.../analysis/integration/TrapezoidIntegrator.java | 2 +-
.../analysis/integration/UnivariateIntegrator.java | 1 -
.../interpolation/AkimaSplineInterpolator.java | 1 -
.../BicubicInterpolatingFunction.java | 2 -
.../interpolation/FieldHermiteInterpolator.java | 5 -
.../interpolation/HermiteInterpolator.java | 6 -
.../analysis/polynomials/PolynomialFunction.java | 2 +-
.../polynomials/PolynomialFunctionNewtonForm.java | 2 -
.../analysis/polynomials/PolynomialsUtils.java | 10 +-
.../legacy/analysis/solvers/AllowedSolution.java | 1 -
.../legacy/analysis/solvers/BaseSecantSolver.java | 1 -
.../BracketedRealFieldUnivariateSolver.java | 1 -
.../solvers/BracketedUnivariateSolver.java | 1 -
.../solvers/BracketingNthOrderBrentSolver.java | 19 +--
.../FieldBracketingNthOrderBrentSolver.java | 17 +--
.../legacy/analysis/solvers/LaguerreSolver.java | 4 +-
.../legacy/analysis/solvers/SecantSolver.java | 1 -
.../analysis/solvers/UnivariateSolverUtils.java | 8 +-
.../distribution/EnumeratedDistribution.java | 2 +-
.../distribution/EnumeratedRealDistribution.java | 1 -
...ariateNormalMixtureExpectationMaximization.java | 1 -
.../math4/legacy/fitting/HarmonicCurveFitter.java | 2 +-
.../leastsquares/DenseWeightedEvaluation.java | 1 -
.../fitting/leastsquares/EvaluationRmsChecker.java | 1 -
.../fitting/leastsquares/GaussNewtonOptimizer.java | 1 -
.../leastsquares/LeastSquaresOptimizer.java | 2 -
.../leastsquares/LevenbergMarquardtOptimizer.java | 6 +-
.../leastsquares/MultivariateJacobianFunction.java | 1 -
.../math4/legacy/genetics/BinaryMutation.java | 1 -
.../commons/math4/legacy/genetics/Chromosome.java | 1 -
.../legacy/genetics/ElitisticListPopulation.java | 1 -
.../commons/math4/legacy/genetics/Fitness.java | 1 -
.../legacy/genetics/FixedGenerationCount.java | 1 -
.../math4/legacy/genetics/GeneticAlgorithm.java | 1 -
.../genetics/InvalidRepresentationException.java | 1 -
.../math4/legacy/genetics/OnePointCrossover.java | 1 -
.../legacy/genetics/PermutationChromosome.java | 1 -
.../math4/legacy/genetics/RandomKeyMutation.java | 1 -
.../math4/legacy/genetics/TournamentSelection.java | 1 -
.../math4/legacy/linear/AbstractFieldMatrix.java | 29 +---
.../math4/legacy/linear/AbstractRealMatrix.java | 17 +--
.../math4/legacy/linear/Array2DRowFieldMatrix.java | 5 +-
.../math4/legacy/linear/Array2DRowRealMatrix.java | 4 +-
.../math4/legacy/linear/ArrayFieldVector.java | 5 +-
.../math4/legacy/linear/BiDiagonalTransformer.java | 7 -
.../commons/math4/legacy/linear/BigRealField.java | 1 -
.../math4/legacy/linear/BlockFieldMatrix.java | 13 +-
.../math4/legacy/linear/BlockRealMatrix.java | 9 +-
.../math4/legacy/linear/ConjugateGradient.java | 4 +-
.../math4/legacy/linear/EigenDecomposition.java | 1 -
.../math4/legacy/linear/FieldLUDecomposition.java | 8 +-
.../commons/math4/legacy/linear/FieldVector.java | 1 -
.../math4/legacy/linear/LUDecomposition.java | 6 +-
.../commons/math4/legacy/linear/MatrixUtils.java | 7 +-
.../legacy/linear/OpenIntToDoubleHashMap.java | 11 --
.../math4/legacy/linear/OpenIntToFieldHashMap.java | 11 --
.../math4/legacy/linear/OpenMapRealMatrix.java | 2 -
.../math4/legacy/linear/OpenMapRealVector.java | 1 -
.../math4/legacy/linear/QRDecomposition.java | 1 -
.../math4/legacy/linear/RealMatrixFormat.java | 1 -
.../commons/math4/legacy/linear/RealVector.java | 4 +-
.../math4/legacy/linear/RealVectorFormat.java | 1 -
.../linear/RectangularCholeskyDecomposition.java | 3 -
.../legacy/linear/SingularValueDecomposition.java | 2 -
.../math4/legacy/linear/SparseFieldMatrix.java | 1 -
.../math4/legacy/linear/SparseFieldVector.java | 5 +-
.../math4/legacy/linear/SparseRealMatrix.java | 1 -
.../apache/commons/math4/legacy/linear/SymmLQ.java | 4 +-
.../legacy/ml/clustering/CentroidCluster.java | 1 -
.../math4/legacy/ml/clustering/DoublePoint.java | 1 -
.../clustering/ElkanKMeansPlusPlusClusterer.java | 18 +--
.../legacy/ml/clustering/FuzzyKMeansClusterer.java | 5 +-
.../ml/clustering/KMeansPlusPlusClusterer.java | 10 +-
.../math4/legacy/ode/AbstractFieldIntegrator.java | 6 -
.../math4/legacy/ode/AbstractIntegrator.java | 7 -
.../math4/legacy/ode/AbstractParameterizable.java | 1 -
.../legacy/ode/ContinuousOutputFieldModel.java | 6 -
.../math4/legacy/ode/ContinuousOutputModel.java | 10 +-
.../commons/math4/legacy/ode/EquationsMapper.java | 1 -
.../math4/legacy/ode/ExpandableStatefulODE.java | 8 --
.../math4/legacy/ode/FieldEquationsMapper.java | 1 -
.../math4/legacy/ode/FieldExpandableODE.java | 4 -
.../commons/math4/legacy/ode/FieldODEState.java | 2 -
.../legacy/ode/FieldODEStateAndDerivative.java | 1 -
.../math4/legacy/ode/FieldSecondaryEquations.java | 1 -
.../math4/legacy/ode/FirstOrderConverter.java | 2 -
.../ode/FirstOrderDifferentialEquations.java | 1 -
.../ode/FirstOrderFieldDifferentialEquations.java | 1 -
.../legacy/ode/FirstOrderFieldIntegrator.java | 1 -
.../math4/legacy/ode/FirstOrderIntegrator.java | 1 -
.../commons/math4/legacy/ode/JacobianMatrices.java | 15 +--
.../legacy/ode/MainStateJacobianProvider.java | 1 -
.../math4/legacy/ode/MultistepFieldIntegrator.java | 11 --
.../math4/legacy/ode/MultistepIntegrator.java | 11 --
.../commons/math4/legacy/ode/ODEIntegrator.java | 1 -
.../math4/legacy/ode/ParameterConfiguration.java | 1 -
.../legacy/ode/ParameterJacobianProvider.java | 1 -
.../math4/legacy/ode/ParameterJacobianWrapper.java | 2 -
.../commons/math4/legacy/ode/Parameterizable.java | 1 -
.../commons/math4/legacy/ode/ParameterizedODE.java | 1 -
.../math4/legacy/ode/ParameterizedWrapper.java | 1 -
.../ode/SecondOrderDifferentialEquations.java | 1 -
.../math4/legacy/ode/SecondOrderIntegrator.java | 1 -
.../math4/legacy/ode/SecondaryEquations.java | 1 -
.../legacy/ode/UnknownParameterException.java | 1 -
.../commons/math4/legacy/ode/events/Action.java | 1 -
.../math4/legacy/ode/events/EventFilter.java | 7 -
.../math4/legacy/ode/events/EventHandler.java | 2 -
.../math4/legacy/ode/events/EventState.java | 26 ++--
.../math4/legacy/ode/events/FieldEventHandler.java | 1 -
.../math4/legacy/ode/events/FieldEventState.java | 7 -
.../math4/legacy/ode/events/FilterType.java | 3 -
.../math4/legacy/ode/events/Transformer.java | 1 -
.../nonstiff/AdamsBashforthFieldIntegrator.java | 7 -
.../ode/nonstiff/AdamsBashforthIntegrator.java | 7 -
.../legacy/ode/nonstiff/AdamsFieldIntegrator.java | 1 -
.../ode/nonstiff/AdamsFieldStepInterpolator.java | 3 -
.../math4/legacy/ode/nonstiff/AdamsIntegrator.java | 1 -
.../ode/nonstiff/AdamsMoultonFieldIntegrator.java | 5 -
.../ode/nonstiff/AdamsMoultonIntegrator.java | 5 -
.../nonstiff/AdamsNordsieckFieldTransformer.java | 6 -
.../ode/nonstiff/AdamsNordsieckTransformer.java | 3 -
.../nonstiff/AdaptiveStepsizeFieldIntegrator.java | 8 --
.../ode/nonstiff/AdaptiveStepsizeIntegrator.java | 16 +--
.../ClassicalRungeKuttaFieldIntegrator.java | 1 -
.../ClassicalRungeKuttaFieldStepInterpolator.java | 2 -
.../nonstiff/ClassicalRungeKuttaIntegrator.java | 1 -
.../ClassicalRungeKuttaStepInterpolator.java | 4 +-
.../nonstiff/DormandPrince54FieldIntegrator.java | 3 -
.../DormandPrince54FieldStepInterpolator.java | 2 -
.../ode/nonstiff/DormandPrince54Integrator.java | 3 -
.../nonstiff/DormandPrince54StepInterpolator.java | 8 +-
.../nonstiff/DormandPrince853FieldIntegrator.java | 4 -
.../DormandPrince853FieldStepInterpolator.java | 3 -
.../ode/nonstiff/DormandPrince853Integrator.java | 3 -
.../nonstiff/DormandPrince853StepInterpolator.java | 13 +-
.../EmbeddedRungeKuttaFieldIntegrator.java | 8 --
.../ode/nonstiff/EmbeddedRungeKuttaIntegrator.java | 8 --
.../legacy/ode/nonstiff/EulerFieldIntegrator.java | 1 -
.../ode/nonstiff/EulerFieldStepInterpolator.java | 2 -
.../math4/legacy/ode/nonstiff/EulerIntegrator.java | 1 -
.../legacy/ode/nonstiff/EulerStepInterpolator.java | 4 +-
.../ode/nonstiff/FieldButcherArrayProvider.java | 1 -
.../legacy/ode/nonstiff/GillFieldIntegrator.java | 2 -
.../ode/nonstiff/GillFieldStepInterpolator.java | 2 -
.../math4/legacy/ode/nonstiff/GillIntegrator.java | 1 -
.../legacy/ode/nonstiff/GillStepInterpolator.java | 4 +-
.../ode/nonstiff/GraggBulirschStoerIntegrator.java | 76 ++++-------
.../GraggBulirschStoerStepInterpolator.java | 13 +-
.../ode/nonstiff/HighamHall54FieldIntegrator.java | 3 -
.../HighamHall54FieldStepInterpolator.java | 2 -
.../ode/nonstiff/HighamHall54Integrator.java | 3 -
.../ode/nonstiff/HighamHall54StepInterpolator.java | 4 +-
.../legacy/ode/nonstiff/LutherFieldIntegrator.java | 2 -
.../ode/nonstiff/LutherFieldStepInterpolator.java | 2 -
.../legacy/ode/nonstiff/LutherIntegrator.java | 1 -
.../ode/nonstiff/LutherStepInterpolator.java | 4 +-
.../ode/nonstiff/MidpointFieldIntegrator.java | 1 -
.../nonstiff/MidpointFieldStepInterpolator.java | 2 -
.../legacy/ode/nonstiff/MidpointIntegrator.java | 1 -
.../ode/nonstiff/MidpointStepInterpolator.java | 4 +-
.../ode/nonstiff/RungeKuttaFieldIntegrator.java | 6 -
.../nonstiff/RungeKuttaFieldStepInterpolator.java | 1 -
.../legacy/ode/nonstiff/RungeKuttaIntegrator.java | 6 -
.../ode/nonstiff/RungeKuttaStepInterpolator.java | 5 -
.../ode/nonstiff/ThreeEighthesFieldIntegrator.java | 1 -
.../ThreeEighthesFieldStepInterpolator.java | 2 -
.../ode/nonstiff/ThreeEighthesIntegrator.java | 1 -
.../nonstiff/ThreeEighthesStepInterpolator.java | 6 +-
.../sampling/AbstractFieldStepInterpolator.java | 1 -
.../ode/sampling/AbstractStepInterpolator.java | 8 --
.../legacy/ode/sampling/DummyStepHandler.java | 1 -
.../legacy/ode/sampling/FieldFixedStepHandler.java | 1 -
.../legacy/ode/sampling/FieldStepHandler.java | 1 -
.../legacy/ode/sampling/FieldStepInterpolator.java | 1 -
.../legacy/ode/sampling/FieldStepNormalizer.java | 2 -
.../legacy/ode/sampling/FixedStepHandler.java | 1 -
.../ode/sampling/NordsieckStepInterpolator.java | 6 -
.../math4/legacy/ode/sampling/StepHandler.java | 1 -
.../legacy/ode/sampling/StepInterpolator.java | 1 -
.../math4/legacy/ode/sampling/StepNormalizer.java | 1 -
.../legacy/optim/AbstractOptimizationProblem.java | 1 -
.../optim/linear/LinearObjectiveFunction.java | 2 +-
.../math4/legacy/optim/linear/SimplexTableau.java | 18 +--
.../scalar/MultivariateFunctionMappingAdapter.java | 2 -
.../scalar/MultivariateFunctionPenaltyAdapter.java | 2 +-
.../nonlinear/scalar/noderiv/BOBYQAOptimizer.java | 9 --
.../legacy/random/SobolSequenceGenerator.java | 1 -
.../commons/math4/legacy/special/BesselJ.java | 9 +-
.../commons/math4/legacy/stat/Frequency.java | 3 +-
.../commons/math4/legacy/stat/StatUtils.java | 1 -
.../stat/correlation/SpearmansCorrelation.java | 1 -
.../stat/correlation/StorelessCovariance.java | 2 -
.../AbstractStorelessUnivariateStatistic.java | 1 -
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.../math4/legacy/stat/descriptive/DoubleArray.java | 1 -
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.../stat/descriptive/ResizableDoubleArray.java | 1 -
.../StatisticalMultivariateSummary.java | 1 -
.../stat/descriptive/StatisticalSummary.java | 1 -
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.../stat/descriptive/moment/SecondMoment.java | 1 -
.../stat/descriptive/moment/StandardDeviation.java | 1 -
.../stat/descriptive/moment/ThirdMoment.java | 1 -
.../descriptive/moment/VectorialCovariance.java | 2 -
.../stat/descriptive/moment/VectorialMean.java | 1 -
.../math4/legacy/stat/descriptive/rank/Median.java | 1 -
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.../math4/legacy/stat/descriptive/summary/Sum.java | 1 -
.../stat/descriptive/summary/SumOfSquares.java | 1 -
.../math4/legacy/stat/inference/ChiSquareTest.java | 13 +-
.../commons/math4/legacy/stat/inference/GTest.java | 2 +-
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.../stat/inference/KolmogorovSmirnovTest.java | 2 +-
.../math4/legacy/stat/inference/OneWayAnova.java | 7 -
.../commons/math4/legacy/stat/inference/TTest.java | 27 ----
.../legacy/stat/interval/AgrestiCoullInterval.java | 1 -
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.../AbstractMultipleLinearRegression.java | 4 +-
.../regression/GLSMultipleLinearRegression.java | 2 -
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.../regression/OLSMultipleLinearRegression.java | 1 -
.../legacy/stat/regression/SimpleRegression.java | 3 +-
.../math4/legacy/util/CombinatoricsUtils.java | 1 -
.../commons/math4/legacy/util/ComplexFormat.java | 1 -
.../commons/math4/legacy/util/CompositeFormat.java | 6 +-
.../math4/legacy/analysis/FunctionUtilsTest.java | 5 -
.../math4/legacy/analysis/MonitoredFunction.java | 1 -
.../math4/legacy/analysis/QuinticFunction.java | 1 -
.../math4/legacy/analysis/SumSincFunction.java | 1 -
.../math4/legacy/analysis/XMinus5Function.java | 1 -
.../analysis/differentiation/DSCompilerTest.java | 3 -
.../differentiation/DerivativeStructureTest.java | 22 ---
.../FiniteDifferencesDifferentiatorTest.java | 8 --
.../differentiation/GradientFunctionTest.java | 2 -
.../differentiation/JacobianFunctionTest.java | 2 -
.../differentiation/SparseGradientTest.java | 20 ---
.../analysis/function/BivariateFunctionTest.java | 1 -
.../math4/legacy/analysis/function/SqrtTest.java | 1 -
.../UnivariateDifferentiableFunctionTest.java | 1 -
.../analysis/function/UnivariateFunctionTest.java | 1 -
.../IterativeLegendreGaussIntegratorTest.java | 2 -
.../integration/MidPointIntegratorTest.java | 3 -
.../integration/TrapezoidIntegratorTest.java | 1 -
.../integration/gauss/BaseRuleFactoryTest.java | 2 +-
.../FieldHermiteInterpolatorTest.java | 4 -
.../interpolation/HermiteInterpolatorTest.java | 3 -
.../interpolation/LoessInterpolatorTest.java | 2 +-
.../PolynomialFunctionNewtonFormTest.java | 1 -
.../analysis/polynomials/PolynomialsUtilsTest.java | 8 --
.../solvers/BaseSecantSolverAbstractTest.java | 3 +-
.../solvers/BracketingNthOrderBrentSolverTest.java | 2 -
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.../FieldBracketingNthOrderBrentSolverTest.java | 2 -
.../legacy/analysis/solvers/MullerSolverTest.java | 2 +-
.../EnumeratedRealDistributionTest.java | 10 +-
.../field/ExtendedFieldElementAbstractTest.java | 1 -
.../AbstractLeastSquaresOptimizerAbstractTest.java | 2 +-
.../leastsquares/EvaluationRmsCheckerTest.java | 1 -
.../fitting/leastsquares/EvaluationTest.java | 6 +-
.../GaussNewtonOptimizerWithCholeskyTest.java | 1 -
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.../math4/legacy/genetics/NPointCrossoverTest.java | 9 +-
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.../math4/legacy/linear/ArrayRealVectorTest.java | 1 -
.../legacy/linear/BiDiagonalTransformerTest.java | 8 +-
.../math4/legacy/linear/BigRealFieldTest.java | 1 -
.../commons/math4/legacy/linear/BigRealTest.java | 1 -
.../math4/legacy/linear/BlockFieldMatrixTest.java | 11 +-
.../math4/legacy/linear/BlockRealMatrixTest.java | 6 +-
.../legacy/linear/CholeskyDecompositionTest.java | 1 -
.../math4/legacy/linear/CholeskySolverTest.java | 2 -
.../math4/legacy/linear/DiagonalMatrixTest.java | 2 -
.../legacy/linear/EigenDecompositionTest.java | 6 -
.../legacy/linear/FieldLUDecompositionTest.java | 4 -
.../math4/legacy/linear/FieldMatrixImplTest.java | 2 -
.../math4/legacy/linear/LUDecompositionTest.java | 4 -
.../legacy/linear/OpenIntToDoubleHashMapTest.java | 4 +-
.../math4/legacy/linear/OpenIntToFieldTest.java | 3 +-
.../math4/legacy/linear/QRDecompositionTest.java | 7 -
.../commons/math4/legacy/linear/QRSolverTest.java | 3 -
.../math4/legacy/linear/RRQRDecompositionTest.java | 5 -
.../math4/legacy/linear/RRQRSolverTest.java | 6 -
.../legacy/linear/RealVectorAbstractTest.java | 3 -
.../RectangularCholeskyDecompositionTest.java | 4 -
.../linear/SingularValueDecompositionTest.java | 6 -
.../legacy/linear/SingularValueSolverTest.java | 2 -
.../math4/legacy/linear/SparseFieldMatrixTest.java | 2 -
.../math4/legacy/linear/SparseFieldVectorTest.java | 4 -
.../math4/legacy/linear/SparseRealMatrixTest.java | 2 -
.../math4/legacy/linear/SparseRealVectorTest.java | 2 -
.../legacy/linear/TriDiagonalTransformerTest.java | 2 +-
.../linear/UnmodifiableRealVectorAbstractTest.java | 1 -
.../legacy/ml/clustering/DBSCANClustererTest.java | 6 +-
.../ml/clustering/FuzzyKMeansClustererTest.java | 3 +-
.../ml/clustering/KMeansPlusPlusClustererTest.java | 4 -
.../MultiKMeansPlusPlusClustererTest.java | 5 +-
.../legacy/ode/ContinuousOutputFieldModelTest.java | 8 +-
.../legacy/ode/ContinuousOutputModelTest.java | 3 -
.../math4/legacy/ode/FieldExpandableODETest.java | 3 -
.../math4/legacy/ode/FirstOrderConverterTest.java | 3 -
.../math4/legacy/ode/JacobianMatricesTest.java | 5 -
.../math4/legacy/ode/TestFieldProblem1.java | 2 -
.../math4/legacy/ode/TestFieldProblem2.java | 2 -
.../math4/legacy/ode/TestFieldProblem3.java | 5 +-
.../math4/legacy/ode/TestFieldProblem5.java | 1 -
.../math4/legacy/ode/TestFieldProblem6.java | 3 -
.../math4/legacy/ode/TestFieldProblemAbstract.java | 1 -
.../math4/legacy/ode/TestFieldProblemHandler.java | 1 -
.../commons/math4/legacy/ode/TestProblem1.java | 2 -
.../commons/math4/legacy/ode/TestProblem2.java | 2 -
.../commons/math4/legacy/ode/TestProblem3.java | 4 +-
.../commons/math4/legacy/ode/TestProblem4.java | 3 -
.../commons/math4/legacy/ode/TestProblem5.java | 1 -
.../commons/math4/legacy/ode/TestProblem6.java | 2 -
.../math4/legacy/ode/TestProblemHandler.java | 2 -
.../math4/legacy/ode/events/CloseEventsTest.java | 3 -
.../math4/legacy/ode/events/EventFilterTest.java | 9 --
.../math4/legacy/ode/events/EventStateTest.java | 5 -
...tractEmbeddedRungeKuttaFieldIntegratorTest.java | 13 --
.../AbstractRungeKuttaFieldIntegratorTest.java | 14 --
.../AdamsBashforthFieldIntegratorTest.java | 1 -
.../ode/nonstiff/AdamsBashforthIntegratorTest.java | 9 --
.../nonstiff/AdamsFieldIntegratorAbstractTest.java | 9 --
.../nonstiff/AdamsMoultonFieldIntegratorTest.java | 1 -
.../ode/nonstiff/AdamsMoultonIntegratorTest.java | 8 --
.../nonstiff/AdamsNordsieckTransformerTest.java | 4 -
...lassicalRungKuttaFieldStepInterpolatorTest.java | 1 -
.../ClassicalRungeKuttaFieldIntegratorTest.java | 2 -
.../ClassicalRungeKuttaIntegratorTest.java | 7 -
.../ClassicalRungeKuttaStepInterpolatorTest.java | 2 -
.../DormandPrince54FieldIntegratorTest.java | 1 -
.../DormandPrince54FieldStepInterpolatorTest.java | 1 -
.../nonstiff/DormandPrince54IntegratorTest.java | 8 --
.../DormandPrince54StepInterpolatorTest.java | 3 -
.../DormandPrince853FieldIntegratorTest.java | 1 -
.../DormandPrince853FieldStepInterpolatorTest.java | 1 -
.../nonstiff/DormandPrince853IntegratorTest.java | 12 --
.../DormandPrince853StepInterpolatorTest.java | 3 -
...eddedRungeKuttaFieldIntegratorAbstractTest.java | 13 --
.../ode/nonstiff/EulerFieldIntegratorTest.java | 2 -
.../nonstiff/EulerFieldStepInterpolatorTest.java | 1 -
.../legacy/ode/nonstiff/EulerIntegratorTest.java | 6 -
.../ode/nonstiff/EulerStepInterpolatorTest.java | 6 -
.../ode/nonstiff/GillFieldIntegratorTest.java | 2 -
.../nonstiff/GillFieldStepInterpolatorTest.java | 1 -
.../legacy/ode/nonstiff/GillIntegratorTest.java | 6 -
.../ode/nonstiff/GillStepInterpolatorTest.java | 2 -
.../nonstiff/GraggBulirschStoerIntegratorTest.java | 10 --
.../GraggBulirschStoerStepInterpolatorTest.java | 3 -
.../nonstiff/HighamHall54FieldIntegratorTest.java | 1 -
.../HighamHall54FieldStepInterpolatorTest.java | 1 -
.../ode/nonstiff/HighamHall54IntegratorTest.java | 9 --
.../nonstiff/HighamHall54StepInterpolatorTest.java | 3 -
.../ode/nonstiff/LutherFieldIntegratorTest.java | 1 -
.../nonstiff/LutherFieldStepInterpolatorTest.java | 1 -
.../legacy/ode/nonstiff/LutherIntegratorTest.java | 5 -
.../ode/nonstiff/LutherStepInterpolatorTest.java | 2 -
.../ode/nonstiff/MidpointFieldIntegratorTest.java | 2 -
.../MidpointFieldStepInterpolatorTest.java | 1 -
.../ode/nonstiff/MidpointIntegratorTest.java | 6 -
.../ode/nonstiff/MidpointStepInterpolatorTest.java | 2 -
.../RungeKuttaFieldIntegratorAbstractTest.java | 14 --
...ungeKuttaFieldStepInterpolatorAbstractTest.java | 8 --
.../legacy/ode/nonstiff/StepFieldProblem.java | 1 -
.../math4/legacy/ode/nonstiff/StepProblem.java | 1 -
.../nonstiff/ThreeEighthesFieldIntegratorTest.java | 2 -
.../ThreeEighthesFieldStepInterpolatorTest.java | 1 -
.../ode/nonstiff/ThreeEighthesIntegratorTest.java | 7 -
.../ThreeEighthesStepInterpolatorTest.java | 2 -
.../ode/sampling/DummyFieldStepInterpolator.java | 1 -
.../legacy/ode/sampling/DummyStepInterpolator.java | 3 -
.../ode/sampling/DummyStepInterpolatorTest.java | 4 -
.../sampling/NordsieckStepInterpolatorTest.java | 2 -
.../ode/sampling/StepInterpolatorTestUtils.java | 6 -
.../ode/sampling/StepNormalizerOutputTestBase.java | 1 -
.../legacy/ode/sampling/StepNormalizerTest.java | 1 -
.../math4/legacy/optim/SimplePointCheckerTest.java | 2 +-
.../math4/legacy/optim/SimpleValueCheckerTest.java | 1 -
.../legacy/optim/linear/SimplexSolverTest.java | 2 -
.../MultivariateFunctionMappingAdapterTest.java | 1 -
.../MultivariateFunctionPenaltyAdapterTest.java | 3 +-
.../NonLinearConjugateGradientOptimizerTest.java | 6 -
.../SimpleUnivariateValueCheckerTest.java | 1 -
.../legacy/random/SobolSequenceGeneratorTest.java | 1 -
.../commons/math4/legacy/stat/FrequencyTest.java | 3 +-
.../commons/math4/legacy/stat/StatUtilsTest.java | 4 -
.../legacy/stat/correlation/CovarianceTest.java | 1 -
.../stat/correlation/KendallsCorrelationTest.java | 1 -
.../correlation/SpearmansRankCorrelationTest.java | 1 -
.../stat/correlation/StorelessCovarianceTest.java | 2 -
.../AggregateSummaryStatisticsTest.java | 3 -
.../descriptive/DescriptiveStatisticsTest.java | 4 -
.../stat/descriptive/DoubleArrayAbstractTest.java | 3 -
.../MultivariateSummaryStatisticsTest.java | 3 -
.../stat/descriptive/ResizableDoubleArrayTest.java | 5 -
.../StorelessUnivariateStatisticAbstractTest.java | 3 -
.../stat/descriptive/SummaryStatisticsTest.java | 2 -
.../UnivariateStatisticAbstractTest.java | 2 -
.../stat/descriptive/moment/FourthMomentTest.java | 1 -
.../stat/descriptive/moment/GeometricMeanTest.java | 1 -
.../stat/descriptive/moment/InteractionTest.java | 2 -
.../stat/descriptive/moment/KurtosisTest.java | 1 -
.../legacy/stat/descriptive/moment/MeanTest.java | 1 -
.../stat/descriptive/moment/SecondMomentTest.java | 1 -
.../descriptive/moment/StandardDeviationTest.java | 1 -
.../stat/descriptive/moment/ThirdMomentTest.java | 1 -
.../stat/descriptive/moment/VarianceTest.java | 2 -
.../moment/VectorialCovarianceTest.java | 1 -
.../stat/descriptive/moment/VectorialMeanTest.java | 1 -
.../legacy/stat/descriptive/rank/MaxTest.java | 1 -
.../legacy/stat/descriptive/rank/MinTest.java | 1 -
.../descriptive/rank/PSquarePercentileTest.java | 12 +-
.../stat/descriptive/rank/PercentileTest.java | 3 -
.../stat/descriptive/summary/ProductTest.java | 1 -
.../stat/descriptive/summary/SumLogTest.java | 1 -
.../legacy/stat/descriptive/summary/SumSqTest.java | 1 -
.../legacy/stat/descriptive/summary/SumTest.java | 1 -
.../legacy/stat/inference/BinomialTestTest.java | 1 -
.../legacy/stat/inference/ChiSquareTestTest.java | 1 -
.../stat/inference/InferenceTestUtilsTest.java | 2 -
.../stat/inference/KolmogorovSmirnovTestTest.java | 3 -
.../legacy/stat/inference/OneWayAnovaTest.java | 3 -
.../math4/legacy/stat/inference/TTestTest.java | 1 -
.../stat/interval/AgrestiCoullIntervalTest.java | 1 -
.../interval/NormalApproximationIntervalTest.java | 1 -
.../legacy/stat/ranking/NaturalRankingTest.java | 1 -
.../GLSMultipleLinearRegressionTest.java | 1 -
.../regression/MillerUpdatingRegressionTest.java | 3 -
.../MultipleLinearRegressionAbstractTest.java | 1 -
.../OLSMultipleLinearRegressionTest.java | 2 -
.../stat/regression/SimpleRegressionTest.java | 3 -
.../math4/legacy/util/CombinatoricsUtilsTest.java | 1 -
.../apache/commons/math4/legacy/util/TestBean.java | 1 -
.../RealFunctionValidation.java | 1 -
commons-math-neuralnet/pom.xml | 3 +-
.../apache/commons/math4/neuralnet/Network.java | 2 +-
commons-math-transform/pom.xml | 3 +-
pom.xml | 150 +++++++--------------
src/changes/changes.xml | 92 ++++++-------
.../resources/checkstyle/checkstyle-legacy.xml | 2 +-
.../checkstyle/checkstyle-suppressions-legacy.xml | 15 +++
src/site/site.xml | 4 +-
src/site/xdoc/developers.xml | 32 ++---
src/site/xdoc/index.xml | 4 +-
src/site/xdoc/mail-lists.xml | 12 +-
src/site/xdoc/proposal.xml | 30 ++---
src/site/xdoc/userguide/analysis.xml | 14 +-
src/site/xdoc/userguide/complex.xml | 2 +-
src/site/xdoc/userguide/exceptions.xml | 2 +-
src/site/xdoc/userguide/filter.xml | 30 ++---
src/site/xdoc/userguide/fraction.xml | 6 +-
src/site/xdoc/userguide/genetics.xml | 28 ++--
src/site/xdoc/userguide/geometry.xml | 2 +-
src/site/xdoc/userguide/index.xml | 36 ++---
src/site/xdoc/userguide/linear.xml | 14 +-
src/site/xdoc/userguide/ml.xml | 24 ++--
src/site/xdoc/userguide/ode.xml | 4 +-
src/site/xdoc/userguide/optimization.xml | 2 +-
src/site/xdoc/userguide/overview.xml | 30 ++---
src/site/xdoc/userguide/random.xml | 4 +-
src/site/xdoc/userguide/special.xml | 6 +-
src/site/xdoc/userguide/stat.xml | 78 +++++------
src/site/xdoc/userguide/transform.xml | 2 +-
src/site/xdoc/userguide/utilities.xml | 28 ++--
.../userguide/ClusterAlgorithmComparison.java | 67 +++++----
.../commons/math4/userguide/ExampleUtils.java | 11 +-
.../math4/userguide/FastMathTestPerformance.java | 6 +-
.../LowDiscrepancyGeneratorComparison.java | 50 +++----
.../math4/userguide/filter/CannonballExample.java | 62 ++++-----
.../userguide/filter/ConstantVoltageExample.java | 48 ++++---
.../userguide/genetics/HelloWorldExample.java | 23 ++--
.../userguide/genetics/ImageEvolutionExample.java | 23 ++--
.../commons/math4/userguide/genetics/Polygon.java | 14 +-
.../userguide/genetics/PolygonChromosome.java | 7 +-
.../userguide/genetics/RandomPolygonMutation.java | 6 +-
src/userguide/pom.xml | 6 +-
587 files changed, 710 insertions(+), 2302 deletions(-)
delete mode 100644 .travis.yml
