Author: chenpei
Date: Mon Nov 4 20:51:41 2013
New Revision: 1538760
URL: http://svn.apache.org/r1538760
Log:
CTAKES-251 - Infinite recursion in DrugMentionAnnotator.java Thanks Bruce.
Adding the temp patch for the interim while there will be a new drug module(s)
coming soon...
Modified:
ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
ctakes/trunk/ctakes-regression-test/testdata/expectedoutput/RegressionPipelineCPETest/edge_cases_plaintext_1.txt.xml
ctakes/trunk/ctakes-regression-test/testdata/input/plaintext/edge_cases_plaintext_1.txt
Modified:
ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java?rev=1538760&r1=1538759&r2=1538760&view=diff
==============================================================================
---
ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
(original)
+++
ctakes/trunk/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
Mon Nov 4 20:51:41 2013
@@ -2211,6 +2211,9 @@ public class DrugMentionAnnotator extend
{
if (noPriorMention) {//Look for lowest value on right
side
beginChunk = getAdjustedWindowSpan(jcas,
beginChunk, endSpan, true)[0];
+ if (beginChunk == -1) {
+ beginChunk = drugChangeStatus.getEnd();
+ }
}
String [] changeStatusArray = new String []
{DrugChangeStatusToken.DECREASE, new Integer
(drugChangeStatus.getBegin()).toString(), new
Integer(drugChangeStatus.getEnd()).toString()};
generateDrugMentionsAndAnnotations(jcas,
