skyrockets-21 commented on issue #70: URL: https://github.com/apache/ctakes/issues/70#issuecomment-2963499445
Hi Sean, I have rebuild the code and problem presist: Here is the output: `Loading Piper File: C:\Users\thoma\Documents\ctakes-main\ctakes-main\ctakes-distribution\target\apache-ctakes-7.0.0-SNAPSHOT\resources\org\apache\ctakes\examples\pipeline\ApacheConDemoRelation.piper Loading Piper File: DefaultTokenizerPipeline Loading Piper File: ChunkerSubPipe Loading Piper File: DictionarySubPipe Loading Piper File: AttributeCleartkSubPipe Loading Piper File: CorefSubPipe Running Piper File ... 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File C:\Users\thoma\Documents\ctakes-main\ctakes-main\ctakes-distribution\target\apache-ctakes-7.0.0-SNAPSHOT\resources\org\apache\ctakes\examples\pipeline\ApacheConDemoRelation.piper 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File DefaultTokenizerPipeline 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File ChunkerSubPipe 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File DictionarySubPipe 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File AttributeCleartkSubPipe 11 Jun 2025 12:34:32 INFO PiperFileReader - Loading Piper File CorefSubPipe Sentence detector model file: org/apache/ctakes/core/models/sentdetect/sd-med-model.zip Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB Finite state machines loaded. POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB Using minimum term text span: 3 Using Dictionary Descriptor: C:\Users\thoma\Documents\ctakes-main\ctakes-main\ctakes-distribution\target\apache-ctakes-7.0.0-SNAPSHOT\resources\org\apache\ctakes\dictionary\lookup\fast\sno_rx_16ab.xml Parsing dictionary specifications: Error: umlsUser CHANGE_ME not allowed. It is a placeholder reminder. Error: umlsPass CHANGE_ME not allowed. It is a placeholder reminder. Error: Starting 2021 NIH is using a new method for UMLS license authentication. To use the UMLS dictionary you must obtain a UMLS API Key. After obtaining a Key, there are several methods to utilize it with Apache cTAKES. You may specify the value of your Key with a single parameter: ctakes.umls_apikey in your Operating System, umlsKey in your Operating System, umlsKey in your Piper File, umlsKey in your Dictionary Properties XML, --key in your Piper Runner command line, --key in your Clinical Pipeline Script command line, -Dctakes.umls_apikey in your Java command parameters, or -DumlsKey in your Java command parameters. The single key settings above will be preferred over the pre-2021 [UserName , Password] method. The pre-2021 [UserName , Password] method may still be used if the username is set to umls_api_key and the password is set to the value of your Key. For more information visit https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0.0.1 https://uts.nlm.nih.gov/ Error: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>) For more information please see log file C:\Users\thoma\Documents\ctakes-main\ctakes-main\ctakes-distribution\target\apache-ctakes-7.0.0-SNAPSHOT\cTAKES.error.log This is a log file on your machine listing information that may be useful in debugging your failed run. Seriously, don't ignore this message. If you want to get to the root of a problem, check the error log file C:\Users\thoma\Documents\ctakes-main\ctakes-main\ctakes-distribution\target\apache-ctakes-7.0.0-SNAPSHOT\cTAKES.error.log` And attached is the error log. Thank you! Cheers, TT -- This is an automated message from the Apache Git Service. To respond to the message, please log on to GitHub and use the URL above to go to the specific comment. To unsubscribe, e-mail: [email protected] For queries about this service, please contact Infrastructure at: [email protected]
