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--> -<div id="titlearea"> -<table cellspacing="0" cellpadding="0"> - <tbody> - <tr style="height: 56px;"> - <td id="projectlogo"><a href="http://madlib.apache.org";><img alt="Logo" src="madlib.png" height="50" style="padding-left:0.5em;" border="0"/ ></a></td> - <td style="padding-left: 0.5em;"> - <div id="projectname"> - <span id="projectnumber">1.15</span> - </div> - <div id="projectbrief">User Documentation for Apache MADlib</div> - </td> - <td> <div id="MSearchBox" class="MSearchBoxInactive"> - <span class="left"> - <img id="MSearchSelect" src="search/mag_sel.png" - onmouseover="return searchBox.OnSearchSelectShow()" - onmouseout="return searchBox.OnSearchSelectHide()" - alt=""/> - <input type="text" id="MSearchField" value="Search" accesskey="S" - onfocus="searchBox.OnSearchFieldFocus(true)" - onblur="searchBox.OnSearchFieldFocus(false)" - onkeyup="searchBox.OnSearchFieldChange(event)"/> - </span><span class="right"> - <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a> - </span> - </div> -</td> - </tr> - </tbody> -</table> -</div> -<!-- end header part --> -<!-- Generated by Doxygen 1.8.14 --> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ -var searchBox = new SearchBox("searchBox", "search",false,'Search'); -/* @license-end */ -</script> -</div><!-- top --> -<div id="side-nav" class="ui-resizable side-nav-resizable"> - <div id="nav-tree"> - <div id="nav-tree-contents"> - <div id="nav-sync" class="sync"></div> - </div> - </div> - <div id="splitbar" style="-moz-user-select:none;" - class="ui-resizable-handle"> - </div> -</div> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ -$(document).ready(function(){initNavTree('group__grp__bfs.html','');}); -/* @license-end */ -</script> -<div id="doc-content"> -<!-- window showing the filter options --> -<div id="MSearchSelectWindow" - onmouseover="return searchBox.OnSearchSelectShow()" - onmouseout="return searchBox.OnSearchSelectHide()" - onkeydown="return searchBox.OnSearchSelectKey(event)"> -</div> - -<!-- iframe showing the search results (closed by default) --> -<div id="MSearchResultsWindow"> -<iframe src="javascript:void(0)" frameborder="0" - name="MSearchResults" id="MSearchResults"> -</iframe> -</div> - -<div class="header"> - <div class="headertitle"> -<div class="title">Breadth-First Search<div class="ingroups"><a class="el" href="group__grp__graph.html">Graph</a></div></div> </div> -</div><!--header--> -<div class="contents"> -<div class="toc"><b>Contents</b> <ul> -<li> -<a href="#bfs">Breadth-First Search</a> </li> -<li> -<a href="#notes">Notes</a> </li> -<li> -<a href="#examples">Examples</a> </li> -<li> -<a href="#literature">Literature</a> </li> -</ul> -</div><p>Given a graph and a source vertex, the breadth-first search (BFS) algorithm finds all nodes reachable from the source vertex by searching / traversing the graph in a breadth-first manner.</p> -<p><a class="anchor" id="bfs"></a></p><dl class="section user"><dt>BFS</dt><dd><pre class="syntax"> -graph_bfs( vertex_table, - vertex_id, - edge_table, - edge_args, - source_vertex, - out_table, - max_distance, - directed, - grouping_cols - ) -</pre></dd></dl> -<p><b>Arguments</b> </p><dl class="arglist"> -<dt>vertex_table </dt> -<dd><p class="startdd">TEXT. Name of the table containing the vertex data for the graph. Must contain the column specified in the 'vertex_id' parameter below.</p> -<p class="enddd"></p> -</dd> -<dt>vertex_id </dt> -<dd><p class="startdd">TEXT, default = 'id'. Name of the column in 'vertex_table' containing vertex ids. The vertex ids are of type INTEGER with no duplicates. They do not need to be contiguous.</p> -<p class="enddd"></p> -</dd> -<dt>edge_table </dt> -<dd><p class="startdd">TEXT. Name of the table containing the edge data. The edge table must contain columns for source vertex and destination vertex. Column naming convention is described below in the 'edge_args' parameter. In addition to vertex columns, if grouping is used then the columns specified in the 'grouping_cols' parameter must be present. </p> -<p class="enddd"></p> -</dd> -<dt>edge_args </dt> -<dd><p class="startdd">TEXT. A comma-delimited string containing multiple named arguments of the form "name=value". The following parameters are supported for this string argument:</p><ul> -<li>src (INTEGER): Name of the column containing the source vertex ids in the edge table. Default column name is 'src'. (This is not to be confused with the 'source_vertex' argument passed to the BFS function.)</li> -<li>dest (INTEGER): Name of the column containing the destination vertex ids in the edge table. Default column name is 'dest'.</li> -</ul> -<p class="enddd"></p> -</dd> -<dt>source_vertex </dt> -<dd><p class="startdd">INTEGER. The source vertex id for the algorithm to start. This vertex id must exist in the 'vertex_id' column of 'vertex_table'.</p> -<p class="enddd"></p> -</dd> -<dt>out_table </dt> -<dd><p class="startdd">TEXT. Name of the table to store the result of BFS. It contains a row for every vertex that is reachable from the source_vertex. In the presence of grouping columns, only those edges are used for which there are no NULL values in any grouping column. The output table will have the following columns (in addition to the grouping columns):</p><ul> -<li>vertex_id : The id for any node reachable from source_vertex in addition to the source_vertex. Will use the input parameter 'vertex_id' for column naming.</li> -<li>dist : The distance in number of edges (or hops) from the source_vertex to where this vertex is located.</li> -<li>parent : The parent of this vertex in BFS traversal of the graph from source_vertex. Will use 'parent' for column naming. For the case where vertex_id = source_vertex, the value for parent is NULL.</li> -</ul> -<p>A summary table named <out_table>_summary is also created. This is an internal table that keeps a record of the input parameters. </p> -<p class="enddd"></p> -</dd> -<dt>max_distance (optional) </dt> -<dd><p class="startdd">INT, default = NULL. Maximum distance to traverse from the source vertex. When this value is null, traverses until reaches leaf node. E.g., if set to 1 will return only adjacent vertices, if set to 7 will return vertices up to a maximum distance of 7 vertices away.</p> -<p class="enddd"></p> -</dd> -<dt>directed (optional) </dt> -<dd><p class="startdd">BOOLEAN, default = FALSE. If TRUE the graph will be treated as directed, else it will be treated as an undirected graph.</p> -<p class="enddd"></p> -</dd> -<dt>grouping_cols (optional) </dt> -<dd>TEXT, default = NULL. A comma-separated list of columns used to group the input into discrete subgraphs. These columns must exist in the edge table. When this value is NULL, no grouping is used and a single BFS result is generated. <dl class="section note"><dt>Note</dt><dd>Expressions are not currently supported for 'grouping_cols'.</dd></dl> -</dd> -</dl> -<p><a class="anchor" id="notes"></a></p><dl class="section user"><dt>Notes</dt><dd></dd></dl> -<p>The graph_bfs function is a SQL implementation of the well-known breadth-first search algorithm [1] modified appropriately for a relational database. It will find any node in the graph reachable from the source_vertex only once. If a node is reachable by many different paths from the source_vertex (i.e. has more than one parent), then only one of those parents is present in the output table. The BFS result will, in general, be different for different choices of source_vertex.</p> -<p><a class="anchor" id="examples"></a></p><dl class="section user"><dt>Examples</dt><dd></dd></dl> -<ol type="1"> -<li>Create vertex and edge tables to represent the graph: <pre class="syntax"> -DROP TABLE IF EXISTS vertex, edge; -CREATE TABLE vertex( - id INTEGER - ); -CREATE TABLE edge( - src INTEGER, - dest INTEGER - ); -INSERT INTO vertex VALUES -(0), -(1), -(2), -(3), -(4), -(5), -(6), -(7), -(8), -(9), -(10), -(11) -; -INSERT INTO edge VALUES -(0, 5), -(1, 0), -(1, 3), -(2, 6), -(3, 4), -(3, 5), -(4, 2), -(8, 9), -(9, 10), -(9, 11), -(10, 8); -</pre></li> -<li>Traverse undirected graph from vertex 3: <pre class="syntax"> -DROP TABLE IF EXISTS out, out_summary; -SELECT madlib.graph_bfs( - 'vertex', -- Vertex table - NULL, -- Vertix id column (NULL means use default naming) - 'edge', -- Edge table - NULL, -- Edge arguments (NULL means use default naming) - 3, -- Source vertex for BFS - 'out'); -- Output table of nodes reachable from source_vertex - -- Default values used for the other arguments -SELECT * FROM out ORDER BY dist,id; -</pre> <pre class="result"> - id | dist | parent -----+------+-------- - 3 | 0 | -<br /> - 1 | 1 | 3 - 4 | 1 | 3 - 5 | 1 | 3 - 0 | 2 | 1 - 2 | 2 | 4 - 6 | 3 | 2 -(7 rows) -</pre> <pre class="syntax"> -SELECT * FROM out_summary; -</pre> <pre class="result"> - vertex_table | vertex_id | edge_table | edge_args | source_vertex | out_table | max_distance | directed | grouping_cols ---------------+-----------+------------+-----------+---------------+-----------+--------------+----------+--------------- - vertex | NULL | edge | NULL | 3 | out | | | NULL -(1 row) -</pre></li> -<li>In this example, we use max_distance to limit the search distance. <pre class="syntax"> -DROP TABLE IF EXISTS out_max, out_max_summary; -SELECT madlib.graph_bfs( - 'vertex', -- Vertex table - NULL, -- Vertix id column (NULL means use default naming) - 'edge', -- Edge table - NULL, -- Edge arguments (NULL means use default naming) - 3, -- Source vertex for BFS - 'out_max', -- Output table of nodes reachable from source_vertex - 2); -- Maximum distance to traverse from source_vertex -<br /> - -- Default values used for the other arguments -SELECT * FROM out_max ORDER BY dist,id; -</pre> <pre class="result"> - id | dist | parent -----+------+-------- - 3 | 0 | -<br /> - 1 | 1 | 3 - 4 | 1 | 3 - 5 | 1 | 3 - 0 | 2 | 1 - 2 | 2 | 4 -(6 rows) -</pre></li> -<li>Now let's do an example using different column names in the tables (i.e., not the defaults). Create the vertex and edge tables: <pre class="syntax"> -DROP TABLE IF EXISTS vertex_alt, edge_alt; -CREATE TABLE vertex_alt AS SELECT id AS v_id FROM vertex; -CREATE TABLE edge_alt AS SELECT src AS n1, dest AS n2 FROM edge; -</pre></li> -<li>Run BFS from vertex 8: <pre class="syntax"> -DROP TABLE IF EXISTS out_alt, out_alt_summary; -SELECT madlib.graph_bfs( - 'vertex_alt', -- Vertex table - 'v_id', -- Vertex id column (NULL means use default naming) - 'edge_alt', -- Edge table - 'src=n1, dest=n2', -- Edge arguments (NULL means use default naming) - 8, -- Source vertex for BFS - 'out_alt'); -- Output table of nodes reachable from source_vertex -SELECT * FROM out_alt ORDER BY v_id; -</pre> <pre class="result"> - v_id | dist | parent -------+------+-------- - 8 | 0 | -<br /> - 9 | 1 | 8 - 10 | 1 | 8 - 11 | 2 | 9 -</pre></li> -<li>Now we show an example where the graph is treated as a directed graph. <pre class="syntax"> -DROP TABLE IF EXISTS out_alt_dir, out_alt_dir_summary; -SELECT madlib.graph_bfs( - 'vertex_alt', -- Vertex table - 'v_id', -- Vertex id column (NULL means use default naming) - 'edge_alt', -- Edge table - 'src=n1, dest=n2', -- Edge arguments (NULL means use default naming) - 8, -- Source vertex for BFS - 'out_alt_dir', -- Output table of nodes reachable from source_vertex - NULL, -- Maximum distance to traverse from source_vertex - TRUE); -- Flag for specifying directed graph -SELECT * FROM out_alt_dir ORDER BY v_id; -</pre> <pre class="result"> - v_id | dist | parent -------+------+-------- - 8 | 0 | -<br /> - 9 | 1 | 8 - 10 | 2 | 9 - 11 | 2 | 9 -(4 rows) -</pre> Notice that, with the graph being treated as directed, the parent of v_id=10 is now vertex 9 and not 8 as in the undirected case.</li> -<li>Create a graph with 2 groups: <pre class="syntax"> -DROP TABLE IF EXISTS edge_gr; -CREATE TABLE edge_gr( - g1 INTEGER, - g2 TEXT, - src INTEGER, - dest INTEGER - ); -INSERT INTO edge_gr VALUES -(100, 'a', 0, 5), -(100, 'a', 1, 0), -(100, 'a', 1, 3), -(100, 'a', 2, 6), -(100, 'a', 3, 4), -(100, 'a', 3, 5), -(100, 'a', 4, 2), -(100, 'a', 8, 9), -(100, 'a', 9, 10), -(100, 'a', 9, 11), -(100, 'a', 10, 8), -(202, 'c', 8, 9), -(202, 'c', 9, 10), -(202, 'c', 9, 11), -(202, 'c', 10, 8) -; -</pre></li> -<li>Run BFS for all groups from a given source_vertex. <pre class="syntax"> -DROP TABLE IF EXISTS out_gr, out_gr_summary; -SELECT madlib.graph_bfs( - 'vertex', -- Vertex table - NULL, -- Vertex id column (NULL means use default naming) - 'edge_gr', -- Edge table - NULL, -- Edge arguments (NULL means use default naming) - 8, -- Source vertex for BFS - 'out_gr', -- Output table of nodes reachable from source_vertex - NULL, -- Maximum distance to traverse from source_vertex - NULL, -- Flag for specifying directed graph - 'g1,g2' -- Grouping columns -); -SELECT * FROM out_gr ORDER BY g1,g2,dist,id; -</pre> <pre class="result"> - g1 | g2 | id | dist | parent ------+----+----+------+-------- - 100 | a | 8 | 0 | -<br /> - 100 | a | 9 | 1 | 8 - 100 | a | 10 | 1 | 8 - 100 | a | 11 | 2 | 9 - 202 | c | 8 | 0 | -<br /> - 202 | c | 9 | 1 | 8 - 202 | c | 10 | 1 | 8 - 202 | c | 11 | 2 | 9 -(8 rows) -</pre> If source_vertex is not present in a group, then that group will not appear in the output table. <pre class="syntax"> -DROP TABLE IF EXISTS out_gr, out_gr_summary; -SELECT madlib.graph_bfs( - 'vertex', -- Vertex table - NULL, -- Vertex id column (NULL means use default naming) - 'edge_gr', -- Edge table - NULL, -- Edge arguments (NULL means use default naming) - 3, -- Source vertex for BFS - 'out_gr', -- Output table of nodes reachable from source_vertex - NULL, -- Maximum distance to traverse from source_vertex - NULL, -- Flag for specifying directed graph - 'g1,g2' -- Grouping columns -); -SELECT * FROM out_gr ORDER BY g1,g2,dist,id; -</pre> <pre class="result"> - g1 | g2 | id | dist | parent ------+----+----+------+-------- - 100 | a | 3 | 0 | -<br /> - 100 | a | 1 | 1 | 3 - 100 | a | 4 | 1 | 3 - 100 | a | 5 | 1 | 3 - 100 | a | 0 | 2 | 1 - 100 | a | 2 | 2 | 4 - 100 | a | 6 | 3 | 2 -(7 rows) -</pre></li> -</ol> -<p><a class="anchor" id="literature"></a></p><dl class="section user"><dt>Literature</dt><dd></dd></dl> -<p>[1] Breadth-first Search algorithm. <a href="https://en.wikipedia.org/wiki/Breadth-first_search";>https://en.wikipedia.org/wiki/Breadth-first_search</a> </p> -</div><!-- contents --> -</div><!-- doc-content --> -<!-- start footer part --> -<div id="nav-path" class="navpath"><!-- id is needed for treeview function! --> - <ul> - <li class="footer">Generated on Mon Aug 6 2018 21:55:39 for MADlib by - <a href="http://www.doxygen.org/index.html";> - <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.14 </li> - </ul> -</div> -</body> -</html>
http://git-wip-us.apache.org/repos/asf/madlib-site/blob/573d66d8/docs/rc/group__grp__cg.html ---------------------------------------------------------------------- diff --git a/docs/rc/group__grp__cg.html b/docs/rc/group__grp__cg.html deleted file mode 100644 index 6d438f5..0000000 --- a/docs/rc/group__grp__cg.html +++ /dev/null @@ -1,192 +0,0 @@ -<!-- HTML header for doxygen 1.8.4--> -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd";> -<html xmlns="http://www.w3.org/1999/xhtml";> -<head> -<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> -<meta http-equiv="X-UA-Compatible" content="IE=9"/> -<meta name="generator" content="Doxygen 1.8.14"/> -<meta name="keywords" content="madlib,postgres,greenplum,machine learning,data mining,deep learning,ensemble methods,data science,market basket analysis,affinity analysis,pca,lda,regression,elastic net,huber white,proportional hazards,k-means,latent dirichlet allocation,bayes,support vector machines,svm"/> -<title>MADlib: Conjugate Gradient</title> -<link href="tabs.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="jquery.js"></script> -<script type="text/javascript" src="dynsections.js"></script> -<link href="navtree.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="resize.js"></script> -<script type="text/javascript" src="navtreedata.js"></script> -<script type="text/javascript" src="navtree.js"></script> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ - $(document).ready(initResizable); -/* @license-end */</script> -<link href="search/search.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="search/searchdata.js"></script> -<script type="text/javascript" src="search/search.js"></script> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ - $(document).ready(function() { init_search(); }); -/* @license-end */ -</script> -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - extensions: ["tex2jax.js", "TeX/AMSmath.js", "TeX/AMSsymbols.js"], - jax: ["input/TeX","output/HTML-CSS"], -}); -</script><script type="text/javascript" async src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js";></script> -<!-- hack in the navigation tree --> -<script type="text/javascript" src="eigen_navtree_hacks.js"></script> -<link href="doxygen.css" rel="stylesheet" type="text/css" /> -<link href="madlib_extra.css" rel="stylesheet" type="text/css"/> -<!-- google analytics --> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - ga('create', 'UA-45382226-1', 'madlib.apache.org'); - ga('send', 'pageview'); -</script> -</head> -<body> -<div id="top"><!-- do not remove this div, it is closed by doxygen! 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There may be some issues that will be addressed in a future version. Interface and implementation is subject to change. </em></dd></dl> -<p>This function uses the iterative conjugate gradient method [1] to find a solution to the function: </p><p class="formulaDsp"> -\[ \boldsymbol Ax = \boldsymbol b \] -</p> -<p> where \( \boldsymbol A \) is a symmetric, positive definite matrix and \(x\) and \( \boldsymbol b \) are vectors.</p> -<p><a class="anchor" id="syntax"></a></p><dl class="section user"><dt>Function Syntax</dt><dd>Conjugate gradient returns x as an array. It has the following syntax.</dd></dl> -<pre class="syntax"> -conjugate_gradient( table_name, - name_of_row_values_col, - name_of_row_number_col, - aray_of_b_values, - desired_precision - ) -</pre><p>Matrix \( \boldsymbol A \) is assumed to be stored in a table where each row consists of at least two columns: array containing values of a given row, row number: </p><pre>{TABLE|VIEW} <em>matrix_A</em> ( - <em>row_number</em> FLOAT, - <em>row_values</em> FLOAT[], -)</pre><p> The number of elements in each row should be the same.</p> -<p>\( \boldsymbol b \) is passed as a FLOAT[] to the function.</p> -<p><a class="anchor" id="examples"></a></p><dl class="section user"><dt>Examples</dt><dd><ol type="1"> -<li>Construct matrix A according to structure. <pre class="example"> -SELECT * FROM data; -</pre> Result: <pre class="result"> - row_num | row_val - --------+--------- - 1 | {2,1} - 2 | {1,4} -(2 rows) -</pre></li> -<li>Call the conjugate gradient function. <pre class="example"> -SELECT conjugate_gradient( 'data', - 'row_val', - 'row_num', - '{2,1}', - 1E-6,1 - ); -</pre> <pre class="result"> -INFO: COMPUTE RESIDUAL ERROR 14.5655661859659 -INFO: ERROR 0.144934004246004 -INFO: ERROR 3.12963615962926e-31 -INFO: TEST FINAL ERROR 2.90029642185163e-29 - conjugate_gradient - -------------------------- - {1,-1.31838984174237e-15} -(1 row) -</pre></li> -</ol> -</dd></dl> -<p><a class="anchor" id="literature"></a></p><dl class="section user"><dt>Literature</dt><dd>[1] "Conjugate gradient method" Wikipedia - <a href="http://en.wikipedia.org/wiki/Conjugate_gradient_method";>http://en.wikipedia.org/wiki/Conjugate_gradient_method</a></dd></dl> -<p><a class="anchor" id="related"></a></p><dl class="section user"><dt>Related Topics</dt><dd>File <a class="el" href="conjugate__gradient_8sql__in.html" title="SQL function computing Conjugate Gradient. ">conjugate_gradient.sql_in</a> documenting the SQL function. </dd></dl> -</div><!-- contents --> -</div><!-- doc-content --> -<!-- start footer part --> -<div id="nav-path" class="navpath"><!-- id is needed for treeview function! --> - <ul> - <li class="footer">Generated on Mon Aug 6 2018 21:55:39 for MADlib by - <a href="http://www.doxygen.org/index.html";> - <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.14 </li> - </ul> -</div> -</body> -</html> http://git-wip-us.apache.org/repos/asf/madlib-site/blob/573d66d8/docs/rc/group__grp__clustered__errors.html ---------------------------------------------------------------------- diff --git a/docs/rc/group__grp__clustered__errors.html b/docs/rc/group__grp__clustered__errors.html deleted file mode 100644 index 9bea86b..0000000 --- a/docs/rc/group__grp__clustered__errors.html +++ /dev/null @@ -1,412 +0,0 @@ -<!-- HTML header for doxygen 1.8.4--> -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd";> -<html xmlns="http://www.w3.org/1999/xhtml";> -<head> -<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/> -<meta http-equiv="X-UA-Compatible" content="IE=9"/> -<meta name="generator" content="Doxygen 1.8.14"/> -<meta name="keywords" content="madlib,postgres,greenplum,machine learning,data mining,deep learning,ensemble methods,data science,market basket analysis,affinity analysis,pca,lda,regression,elastic net,huber white,proportional hazards,k-means,latent dirichlet allocation,bayes,support vector machines,svm"/> -<title>MADlib: Clustered Variance</title> -<link href="tabs.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="jquery.js"></script> -<script type="text/javascript" src="dynsections.js"></script> -<link href="navtree.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="resize.js"></script> -<script type="text/javascript" src="navtreedata.js"></script> -<script type="text/javascript" src="navtree.js"></script> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ - $(document).ready(initResizable); -/* @license-end */</script> -<link href="search/search.css" rel="stylesheet" type="text/css"/> -<script type="text/javascript" src="search/searchdata.js"></script> -<script type="text/javascript" src="search/search.js"></script> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ - $(document).ready(function() { init_search(); }); -/* @license-end */ -</script> -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - extensions: ["tex2jax.js", "TeX/AMSmath.js", "TeX/AMSsymbols.js"], - jax: ["input/TeX","output/HTML-CSS"], -}); -</script><script type="text/javascript" async src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js";></script> -<!-- hack in the navigation tree --> -<script type="text/javascript" src="eigen_navtree_hacks.js"></script> -<link href="doxygen.css" rel="stylesheet" type="text/css" /> -<link href="madlib_extra.css" rel="stylesheet" type="text/css"/> -<!-- google analytics --> -<script> - (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ - (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), - m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) - })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); - ga('create', 'UA-45382226-1', 'madlib.apache.org'); - ga('send', 'pageview'); -</script> -</head> -<body> -<div id="top"><!-- do not remove this div, it is closed by doxygen! --> -<div id="titlearea"> -<table cellspacing="0" cellpadding="0"> - <tbody> - <tr style="height: 56px;"> - <td id="projectlogo"><a href="http://madlib.apache.org";><img alt="Logo" src="madlib.png" height="50" style="padding-left:0.5em;" border="0"/ ></a></td> - <td style="padding-left: 0.5em;"> - <div id="projectname"> - <span id="projectnumber">1.15</span> - </div> - <div id="projectbrief">User Documentation for Apache MADlib</div> - </td> - <td> <div id="MSearchBox" class="MSearchBoxInactive"> - <span class="left"> - <img id="MSearchSelect" src="search/mag_sel.png" - onmouseover="return searchBox.OnSearchSelectShow()" - onmouseout="return searchBox.OnSearchSelectHide()" - alt=""/> - <input type="text" id="MSearchField" value="Search" accesskey="S" - onfocus="searchBox.OnSearchFieldFocus(true)" - onblur="searchBox.OnSearchFieldFocus(false)" - onkeyup="searchBox.OnSearchFieldChange(event)"/> - </span><span class="right"> - <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a> - </span> - </div> -</td> - </tr> - </tbody> -</table> -</div> -<!-- end header part --> -<!-- Generated by Doxygen 1.8.14 --> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ -var searchBox = new SearchBox("searchBox", "search",false,'Search'); -/* @license-end */ -</script> -</div><!-- top --> -<div id="side-nav" class="ui-resizable side-nav-resizable"> - <div id="nav-tree"> - <div id="nav-tree-contents"> - <div id="nav-sync" class="sync"></div> - </div> - </div> - <div id="splitbar" style="-moz-user-select:none;" - class="ui-resizable-handle"> - </div> -</div> -<script type="text/javascript"> -/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&dn=gpl-2.0.txt GPL-v2 */ -$(document).ready(function(){initNavTree('group__grp__clustered__errors.html','');}); -/* @license-end */ -</script> -<div id="doc-content"> -<!-- window showing the filter options --> -<div id="MSearchSelectWindow" - onmouseover="return searchBox.OnSearchSelectShow()" - onmouseout="return searchBox.OnSearchSelectHide()" - onkeydown="return searchBox.OnSearchSelectKey(event)"> -</div> - -<!-- iframe showing the search results (closed by default) --> -<div id="MSearchResultsWindow"> -<iframe src="javascript:void(0)" frameborder="0" - name="MSearchResults" id="MSearchResults"> -</iframe> -</div> - -<div class="header"> - <div class="headertitle"> -<div class="title">Clustered Variance<div class="ingroups"><a class="el" href="group__grp__super.html">Supervised Learning</a> » <a class="el" href="group__grp__regml.html">Regression Models</a></div></div> </div> -</div><!--header--> -<div class="contents"> -<div class="toc"><b>Contents</b> <ul> -<li> -<a href="#train_linregr">Clustered Variance Linear Regression Training Function</a> </li> -<li> -<a href="#train_logregr">Clustered Variance Logistic Regression Training Function</a> </li> -<li> -<a href="#train_mlogregr">Clustered Variance Multinomial Logistic Regression Training Function</a> </li> -<li> -<a href="#train_cox">Clustered Variance for Cox Proportional Hazards model</a> </li> -<li> -<a href="#examples">Examples</a> </li> -<li> -<a href="#notes">Notes</a> </li> -<li> -<a href="#background">Technical Background</a> </li> -<li> -<a href="#related">Related Topics</a> </li> -</ul> -</div><p>The Clustered Variance module adjusts standard errors for clustering. For example, replicating a dataset 100 times should not increase the precision of parameter estimates, but performing this procedure with the IID assumption will actually do this. Another example is in economics of education research, it is reasonable to expect that the error terms for children in the same class are not independent. Clustering standard errors can correct for this.</p> -<p>The MADlib Clustered Variance module includes functions to calculate linear, logistic, and multinomial logistic regression problems.</p> -<p><a class="anchor" id="train_linregr"></a></p><dl class="section user"><dt>Clustered Variance Linear Regression Training Function</dt><dd></dd></dl> -<p>The clustered variance linear regression training function has the following syntax. </p><pre class="syntax"> -clustered_variance_linregr ( source_table, - out_table, - dependent_varname, - independent_varname, - clustervar, - grouping_cols - ) -</pre><p> <b>Arguments</b> </p><dl class="arglist"> -<dt>source_table </dt> -<dd><p class="startdd">TEXT. The name of the table containing the input data.</p> -<p class="enddd"></p> -</dd> -<dt>out_table </dt> -<dd><p class="startdd">VARCHAR. Name of the generated table containing the output model. The output table contains the following columns. </p><table class="output"> -<tr> -<th>coef </th><td>DOUBLE PRECISION[]. Vector of the coefficients of the regression. </td></tr> -<tr> -<th>std_err </th><td>DOUBLE PRECISION[]. Vector of the standard error of the coefficients. </td></tr> -<tr> -<th>t_stats </th><td>DOUBLE PRECISION[]. Vector of the t-stats of the coefficients. </td></tr> -<tr> -<th>p_values </th><td>DOUBLE PRECISION[]. Vector of the p-values of the coefficients. </td></tr> -</table> -<p>A summary table named <out_table>_summary is also created, which is the same as the summary table created by linregr_train function. Please refer to the documentation for linear regression for details.</p> -<p></p> -<p class="enddd"></p> -</dd> -<dt>dependent_varname </dt> -<dd>TEXT. An expression to evaluate for the dependent variable. </dd> -<dt>independent_varname </dt> -<dd>TEXT. An Expression to evalue for the independent variables. </dd> -<dt>clustervar </dt> -<dd>TEXT. A comma-separated list of the columns to use as cluster variables. </dd> -<dt>grouping_cols (optional) </dt> -<dd>TEXT, default: NULL. <em>Not currently implemented. Any non-NULL value is ignored.</em> An expression list used to group the input dataset into discrete groups, running one regression per group. Similar to the SQL GROUP BY clause. When this value is null, no grouping is used and a single result model is generated. </dd> -</dl> -<p><a class="anchor" id="train_logregr"></a></p><dl class="section user"><dt>Clustered Variance Logistic Regression Training Function</dt><dd></dd></dl> -<p>The clustered variance logistic regression training function has the following syntax. </p><pre class="syntax"> -clustered_variance_logregr( source_table, - out_table, - dependent_varname, - independent_varname, - clustervar, - grouping_cols, - max_iter, - optimizer, - tolerance, - verbose_mode - ) -</pre><p> <b>Arguments</b> </p><dl class="arglist"> -<dt>source_table </dt> -<dd>TEXT. The name of the table containing the input data. </dd> -<dt>out_table </dt> -<dd><p class="startdd">VARCHAR. Name of the generated table containing the output model. The output table has the following columns: </p><table class="output"> -<tr> -<th>coef </th><td>Vector of the coefficients of the regression. </td></tr> -<tr> -<th>std_err </th><td>Vector of the standard error of the coefficients. </td></tr> -<tr> -<th>z_stats </th><td>Vector of the z-stats of the coefficients. </td></tr> -<tr> -<th>p_values </th><td>Vector of the p-values of the coefficients. </td></tr> -</table> -<p>A summary table named <out_table>_summary is also created, which is the same as the summary table created by logregr_train function. Please refer to the documentation for logistic regression for details.</p> -<p class="enddd"></p> -</dd> -<dt>dependent_varname </dt> -<dd>TEXT. An expression to evaluate for the dependent variable. </dd> -<dt>independent_varname </dt> -<dd>TEXT. An expression to evaluate for the independent variable. </dd> -<dt>clustervar </dt> -<dd>TEXT. A comma-separated list of columns to use as cluster variables. </dd> -<dt>grouping_cols (optional) </dt> -<dd>TEXT, default: NULL. <em>Not yet implemented. Any non-NULL values are ignored.</em> An expression list used to group the input dataset into discrete groups, running one regression per group. Similar to the SQL GROUP BY clause. When this value is NULL, no grouping is used and a single result model is generated. </dd> -<dt>max_iter (optional) </dt> -<dd>INTEGER, default: 20. The maximum number of iterations that are allowed. </dd> -<dt>optimizer (optional) </dt> -<dd>TEXT, default: 'irls'. The name of the optimizer to use: <ul> -<li> -'newton' or 'irls': Iteratively reweighted least squares </li> -<li> -'cg': conjugate gradient </li> -<li> -'igd': incremental gradient descent. </li> -</ul> -</dd> -<dt>tolerance (optional) </dt> -<dd>FLOAT8, default: 0.0001 The difference between log-likelihood values in successive iterations that should indicate convergence. A zero disables the convergence criterion, so that execution stops after <em>n</em> Iterations have completed. </dd> -<dt>verbose_mode (optional) </dt> -<dd>BOOLEAN, default FALSE. Provides verbose_mode output of the results of training. </dd> -</dl> -<p><a class="anchor" id="train_mlogregr"></a></p><dl class="section user"><dt>Clustered Variance Multinomial Logistic Regression Training Function</dt><dd></dd></dl> -<pre class="syntax"> -clustered_variance_mlogregr( source_table, - out_table, - dependent_varname, - independent_varname, - cluster_varname, - ref_category, - grouping_cols, - optimizer_params, - verbose_mode - ) -</pre><p> <b>Arguments</b> </p><dl class="arglist"> -<dt>source_table </dt> -<dd>TEXT. The name of the table containing the input data. </dd> -<dt>out_table </dt> -<dd><p class="startdd">TEXT. The name of the table where the regression model will be stored. The output table has the following columns: </p><table class="output"> -<tr> -<th>category </th><td>The category. </td></tr> -<tr> -<th>ref_category </th><td>The refererence category used for modeling. </td></tr> -<tr> -<th>coef </th><td>Vector of the coefficients of the regression. </td></tr> -<tr> -<th>std_err </th><td>Vector of the standard error of the coefficients. </td></tr> -<tr> -<th>z_stats </th><td>Vector of the z-stats of the coefficients. </td></tr> -<tr> -<th>p_values </th><td>Vector of the p-values of the coefficients. </td></tr> -</table> -<p class="enddd">A summary table named <out_table>_summary is also created, which is the same as the summary table created by mlogregr_train function. Please refer to the documentation for multinomial logistic regression for details. </p> -</dd> -<dt>dependent_varname </dt> -<dd>TEXT. An expression to evaluate for the dependent variable. </dd> -<dt>independent_varname </dt> -<dd>TEXT. An expression to evaluate for the independent variable. </dd> -<dt>cluster_varname </dt> -<dd>TEXT. A comma-separated list of columns to use as cluster variables. </dd> -<dt>ref_category (optional) </dt> -<dd>INTEGER. Reference category in the range [0, num_category). </dd> -<dt>groupingvarng_cols (optional) </dt> -<dd>TEXT, default: NULL. <em>Not yet implemented. Any non-NULL values are ignored.</em> A comma-separated list of columns to use as grouping variables. </dd> -<dt>optimizer_params (optional) </dt> -<dd>TEXT, default: NULL, which uses the default values of optimizer parameters: max_iter=20, optimizer='newton', tolerance=1e-4. It should be a string that contains pairs of 'key=value' separated by commas. </dd> -<dt>verbose_mode (optional) </dt> -<dd>BOOLEAN, default FALSE. If TRUE, detailed information is printed when computing logistic regression. </dd> -</dl> -<p><a class="anchor" id="train_cox"></a></p><dl class="section user"><dt>Clustered Variance for Cox Proportional Hazards model</dt><dd></dd></dl> -<p>The clustered robust variance estimator function for the Cox Proportional Hazards model has the following syntax. </p><pre class="syntax"> -clustered_variance_coxph(model_table, output_table, clustervar) -</pre><p><b>Arguments</b> </p><dl class="arglist"> -<dt>model_table </dt> -<dd>TEXT. The name of the model table, which is exactaly the same as the 'output_table' parameter of <a class="el" href="cox__prop__hazards_8sql__in.html#a737450bbfe0f10204b0074a9d45b0cef" title="Compute cox-regression coefficients and diagnostic statistics. ">coxph_train()</a> function. </dd> -<dt>output_table </dt> -<dd>TEXT. The name of the table where the output is saved. It has the following columns: <table class="output"> -<tr> -<th>coef </th><td>FLOAT8[]. Vector of the coefficients. </td></tr> -<tr> -<th>loglikelihood </th><td>FLOAT8. Log-likelihood value of the MLE estimate. </td></tr> -<tr> -<th>std_err </th><td>FLOAT8[]. Vector of the standard error of the coefficients. </td></tr> -<tr> -<th>clustervar </th><td>TEXT. A comma-separated list of columns to use as cluster variables. </td></tr> -<tr> -<th>clustered_se </th><td>FLOAT8[]. Vector of the robust standard errors of the coefficients. </td></tr> -<tr> -<th>clustered_z </th><td>FLOAT8[]. Vector of the robust z-stats of the coefficients. </td></tr> -<tr> -<th>clustered_p </th><td>FLOAT8[]. Vector of the robust p-values of the coefficients. </td></tr> -<tr> -<th>hessian </th><td>FLOAT8[]. The Hessian matrix. </td></tr> -</table> -</dd> -<dt>clustervar </dt> -<dd>TEXT. A comma-separated list of columns to use as cluster variables. </dd> -</dl> -<p><a class="anchor" id="examples"></a></p><dl class="section user"><dt>Examples</dt><dd></dd></dl> -<ol type="1"> -<li>View online help for the clustered variance linear regression function. <pre class="example"> -SELECT madlib.clustered_variance_linregr(); -</pre></li> -<li>Run the linear regression function and view the results. <pre class="example"> -DROP TABLE IF EXISTS out_table; -SELECT madlib.clustered_variance_linregr( 'abalone', - 'out_table', - 'rings', - 'ARRAY[1, diameter, length, width]', - 'sex', - NULL - ); -SELECT * FROM out_table; -</pre></li> -<li>View online help for the clustered variance logistic regression function. <pre class="example"> -SELECT madlib.clustered_variance_logregr(); -</pre></li> -<li>Run the logistic regression function and view the results. <pre class="example"> -DROP TABLE IF EXISTS out_table; -SELECT madlib.clustered_variance_logregr( 'abalone', - 'out_table', - 'rings < 10', - 'ARRAY[1, diameter, length, width]', - 'sex' - ); -SELECT * FROM out_table; -</pre></li> -<li>View online help for the clustered variance multinomial logistic regression function. <pre class="example"> -SELECT madlib.clustered_variance_mlogregr(); -</pre></li> -<li>Run the multinomial logistic regression and view the results. <pre class="example"> -DROP TABLE IF EXISTS out_table; -SELECT madlib.clustered_variance_mlogregr( 'abalone', - 'out_table', - 'CASE WHEN rings < 10 THEN 1 ELSE 0 END', - 'ARRAY[1, diameter, length, width]', - 'sex', - 0 - ); -SELECT * FROM out_table; -</pre></li> -<li>Run the Cox Proportional Hazards regression and compute the clustered robust estimator. <pre class="example"> -DROP TABLE IF EXISTS lung_cl_out; -DROP TABLE IF EXISTS lung_out; -DROP TABLE IF EXISTS lung_out_summary; -SELECT madlib.coxph_train('lung', - 'lung_out', - 'time', - 'array[age, "ph.ecog"]', - 'TRUE', - NULL, - NULL); -SELECT madlib.clustered_variance_coxph('lung_out', - 'lung_cl_out', - '"ph.karno"'); -SELECT * FROM lung_cl_out; -</pre></li> -</ol> -<p><a class="anchor" id="notes"></a></p><dl class="section user"><dt>Notes</dt><dd></dd></dl> -<ul> -<li>Note that we need to manually include an intercept term in the independent variable expression. The NULL value of <em>groupingvar</em> means that there is no grouping in the calculation.</li> -</ul> -<p><a class="anchor" id="background"></a></p><dl class="section user"><dt>Technical Background</dt><dd></dd></dl> -<p>Assume that the data can be separated into \(m\) clusters. Usually this can be done by grouping the data table according to one or multiple columns.</p> -<p>The estimator has a similar form to the usual sandwich estimator </p><p class="formulaDsp"> -\[ S(\vec{c}) = B(\vec{c}) M(\vec{c}) B(\vec{c}) \] -</p> -<p>The bread part is the same as Huber-White sandwich estimator </p><p class="formulaDsp"> -\begin{eqnarray} B(\vec{c}) & = & \left(-\sum_{i=1}^{n} H(y_i, \vec{x}_i, \vec{c})\right)^{-1}\\ & = & \left(-\sum_{i=1}^{n}\frac{\partial^2 l(y_i, \vec{x}_i, \vec{c})}{\partial c_\alpha \partial c_\beta}\right)^{-1} \end{eqnarray} -</p> -<p> where \(H\) is the hessian matrix, which is the second derivative of the target function </p><p class="formulaDsp"> -\[ L(\vec{c}) = \sum_{i=1}^n l(y_i, \vec{x}_i, \vec{c})\ . \] -</p> -<p>The meat part is different </p><p class="formulaDsp"> -\[ M(\vec{c}) = \bf{A}^T\bf{A} \] -</p> -<p> where the \(m\)-th row of \(\bf{A}\) is </p><p class="formulaDsp"> -\[ A_m = \sum_{i\in G_m}\frac{\partial l(y_i,\vec{x}_i,\vec{c})}{\partial \vec{c}} \] -</p> -<p> where \(G_m\) is the set of rows that belong to the same cluster.</p> -<p>We can compute the quantities of \(B\) and \(A\) for each cluster during one scan through the data table in an aggregate function. Then sum over all clusters to the full \(B\) and \(A\) in the outside of the aggregate function. At last, the matrix mulplitications are done in a separate function on the master node.</p> -<p>When multinomial logistic regression is computed before the multinomial clustered variance calculation, it uses a default reference category of zero and the regression coefficients are included in the output table. The regression coefficients in the output are in the same order as multinomial logistic regression function, which is described below. For a problem with \( K \) dependent variables \( (1, ..., K) \) and \( J \) categories \( (0, ..., J-1) \), let \( {m_{k,j}} \) denote the coefficient for dependent variable \( k \) and category \( j \). The output is \( {m_{k_1, j_0}, m_{k_1, j_1} \ldots m_{k_1, j_{J-1}}, m_{k_2, j_0}, m_{k_2, j_1} \ldots m_{k_K, j_{J-1}}} \). The order is NOT CONSISTENT with the multinomial regression marginal effect calculation with function <em>marginal_mlogregr</em>. This is deliberate because the interfaces of all multinomial regressions (robust, clustered, ...) will be moved to match that used in marginal.</p> -<p><a class="anchor" id="literature"></a></p><dl class="section user"><dt>Literature</dt><dd></dd></dl> -<p>[1] Standard, Robust, and Clustered Standard Errors Computed in R, <a href="http://diffuseprior.wordpress.com/2012/06/15/standard-robust-and-clustered-standard-errors-computed-in-r/";>http://diffuseprior.wordpress.com/2012/06/15/standard-robust-and-clustered-standard-errors-computed-in-r/</a></p> -<p><a class="anchor" id="related"></a></p><dl class="section user"><dt>Related Topics</dt><dd>File <a class="el" href="clustered__variance_8sql__in.html">clustered_variance.sql_in</a> documenting the clustered variance SQL functions.</dd></dl> -<p>File <a class="el" href="clustered__variance__coxph_8sql__in.html" title="SQL functions for clustered robust cox proportional hazards regression. 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A summary table will also be created that contains the names of the features combined into array, so that this process can be reversed using the function vec2cols.</p> -<p><a class="anchor" id="cols2vec_usage"></a></p><dl class="section user"><dt>Usage</dt><dd></dd></dl> -<pre class="syntax"> -cols2vec( - source_table, - output_table, - list_of_features, - list_of_features_to_exclude, - cols_to_output -) -</pre><p><b>Arguments</b> </p><dl class="arglist"> -<dt>source_table </dt> -<dd><p class="startdd">TEXT. Name of the table containing the source data.</p> -<p class="enddd"></p> -</dd> -<dt>output_table </dt> -<dd><p class="startdd">TEXT. Name of the generated table containing the output.</p> -<p class="enddd"></p> -</dd> -<dt>list_of_features </dt> -<dd><p class="startdd">TEXT. Comma-separated string of column names or expressions to put into feature array. Can also be '*' implying all columns are to be put into feature array (except for the ones included in the next argument that lists exclusions). Type casting will be done as per the regular type casting rules of the underlying database. Array columns in the source table are not supported in the 'list_of_features' parameter. Also, all of the features to be included must be of the same type and must not have null values.</p> -<p class="enddd"></p> -</dd> -<dt>list_of_features_to_exclude (optional) </dt> -<dd><p class="startdd">TEXT. Default NULL. Comma-separated string of column names to exclude from the feature array. <br /> -Typically used when 'list_of_features' is set to '*'.</p> -<p class="enddd"></p> -</dd> -<dt>cols_to_output (optional) </dt> -<dd>TEXT. Default NULL. Comma-separated string of column names from the source table to keep in the output table, in addition to the feature array. To keep all columns from the source table, use '*' for this parameter. </dd> -</dl> -<p><b>Output table</b> <br /> - The output table produced by the cols2vec function contains the following columns: </p><table class="output"> -<tr> -<th><...> </th><td>Columns from source table, depending on which ones are kept (if any). </td></tr> -<tr> -<th>feature_vector </th><td>Column that contains the feature array. </td></tr> -</table> -<p><b>Output summary table</b> <br /> - A summary table named <em><output_table>_summary</em> is also created that contains: </p><table class="output"> -<tr> -<th>source_table </th><td>Name of the table containing the source data. </td></tr> -<tr> -<th>list_of_features </th><td>List of features to put in vector. </td></tr> -<tr> -<th>list_of_features_to_exclude </th><td>Features specified by the user to exclude from 'list_of_features'. </td></tr> -<tr> -<th>feature_names </th><td>Names of the features that were nested (converted to a vector) in the output table. </td></tr> -</table> -<p><a class="anchor" id="cols2vec_example"></a></p><dl class="section user"><dt>Examples</dt><dd></dd></dl> -<ol type="1"> -<li>Load sample data: <pre class="example"> -DROP TABLE IF EXISTS golf CASCADE; -CREATE TABLE golf ( - id integer NOT NULL, - "OUTLOOK" text, - temperature double precision, - humidity double precision, - "Temp_Humidity" double precision[], - clouds_airquality text[], - windy boolean, - class text, - observation_weight double precision -); -INSERT INTO golf VALUES -(1,'sunny', 85, 85, ARRAY[85, 85],ARRAY['none', 'unhealthy'], 'false','Don''t Play', 5.0), -(2, 'sunny', 80, 90, ARRAY[80, 90], ARRAY['none', 'moderate'], 'true', 'Don''t Play', 5.0), -(3, 'overcast', 83, 78, ARRAY[83, 78], ARRAY['low', 'moderate'], 'false', 'Play', 1.5), -(4, 'rain', 70, 96, ARRAY[70, 96], ARRAY['low', 'moderate'], 'false', 'Play', 1.0), -(5, 'rain', 68, 80, ARRAY[68, 80], ARRAY['medium', 'good'], 'false', 'Play', 1.0), -(6, 'rain', 65, 70, ARRAY[65, 70], ARRAY['low', 'unhealthy'], 'true', 'Don''t Play', 1.0), -(7, 'overcast', 64, 65, ARRAY[64, 65], ARRAY['medium', 'moderate'], 'true', 'Play', 1.5), -(8, 'sunny', 72, 95, ARRAY[72, 95], ARRAY['high', 'unhealthy'], 'false', 'Don''t Play', 5.0), -(9, 'sunny', 69, 70, ARRAY[69, 70], ARRAY['high', 'good'], 'false', 'Play', 5.0), -(10, 'rain', 75, 80, ARRAY[75, 80], ARRAY['medium', 'good'], 'false', 'Play', 1.0), -(11, 'sunny', 75, 70, ARRAY[75, 70], ARRAY['none', 'good'], 'true', 'Play', 5.0), -(12, 'overcast', 72, 90, ARRAY[72, 90], ARRAY['medium', 'moderate'], 'true', 'Play', 1.5), -(13, 'overcast', 81, 75, ARRAY[81, 75], ARRAY['medium', 'moderate'], 'false', 'Play', 1.5), -(14, 'rain', 71, 80, ARRAY[71, 80], ARRAY['low', 'unhealthy'], 'true', 'Don''t Play', 1.0); -</pre></li> -<li>Run cols2vec to combine the temperature and humidity columns into a single array feature. <pre class="example"> -DROP TABLE IF EXISTS cols2vec_result, cols2vec_result_summary; -SELECT madlib.cols2vec( - 'golf', - 'cols2vec_result', - 'temperature, humidity' -); -SELECT * FROM cols2vec_result; -</pre> <pre class="result"> - feature_vector -----------------+ - {85,85} - {80,90} - {83,78} - {70,96} - {68,80} - {65,70} - {64,65} - {72,95} - {69,70} - {75,80} - {75,70} - {72,90} - {81,75} - {71,80} -(14 rows) -</pre> View the summary table: <pre class="example"> -\x on -SELECT * FROM cols2vec_result_summary; -\x off -</pre> <pre class="result"> --[ RECORD 1 ]---------------+---------------------------------------------------------------- -source_table | golf -list_of_features | temperature, humidity -list_of_features_to_exclude | None -feature_names | {temperature,humidity} -</pre></li> -<li>Combine the temperature and humidity columns and keep 2 other columns from source_table. <pre class="example"> -DROP TABLE IF EXISTS cols2vec_result, cols2vec_result_summary; -SELECT madlib.cols2vec( - 'golf', - 'cols2vec_result', - 'temperature, humidity', - NULL, - 'id, "OUTLOOK"' -); -SELECT * FROM cols2vec_result ORDER BY id; -</pre> <pre class="result"> - id | OUTLOOK | feature_vector -----+----------+---------------- - 1 | sunny | {85,85} - 2 | sunny | {80,90} - 3 | overcast | {83,78} - 4 | rain | {70,96} - 5 | rain | {68,80} - 6 | rain | {65,70} - 7 | overcast | {64,65} - 8 | sunny | {72,95} - 9 | sunny | {69,70} - 10 | rain | {75,80} - 11 | sunny | {75,70} - 12 | overcast | {72,90} - 13 | overcast | {81,75} - 14 | rain | {71,80} -(14 rows) -</pre> View the summary table: <pre class="example"> -\x on -SELECT * FROM cols2vec_result_summary; -\x off -</pre> <pre class="result"> --[ RECORD 1 ]---------------+---------------------------------------------------------------- -source_table | golf -list_of_features | temperature, humidity -list_of_features_to_exclude | None -feature_names | {temperature,humidity} -</pre></li> -<li>Combine all columns, excluding all columns that are not of type double precision. <pre class="example"> -DROP TABLE IF EXISTS cols2vec_result, cols2vec_result_summary; -SELECT madlib.cols2vec( - 'golf', - 'cols2vec_result', - '*', - '"OUTLOOK", "Temp_Humidity", clouds_airquality, windy, class, id', - 'id, "OUTLOOK"' -); -SELECT * FROM cols2vec_result ORDER BY id; -</pre> <pre class="result"> - id | OUTLOOK | feature_vector -----+----------+---------------- - 1 | sunny | {85,85,5} - 2 | sunny | {80,90,5} - 3 | overcast | {83,78,1.5} - 4 | rain | {70,96,1} - 5 | rain | {68,80,1} - 6 | rain | {65,70,1} - 7 | overcast | {64,65,1.5} - 8 | sunny | {72,95,5} - 9 | sunny | {69,70,5} - 10 | rain | {75,80,1} - 11 | sunny | {75,70,5} - 12 | overcast | {72,90,1.5} - 13 | overcast | {81,75,1.5} - 14 | rain | {71,80,1} -(14 rows) -</pre> View summary table: <pre class="example"> -\x on -SELECT * FROM cols2vec_result_summary; -\x off -</pre> <pre class="result"> --[ RECORD 1 ]---------------+---------------------------------------------------------------- -source_table | golf -list_of_features | * -list_of_features_to_exclude | "OUTLOOK", "Temp_Humidity", clouds_airquality, windy, class, id -feature_names | {temperature,humidity,observation_weight} -</pre></li> -<li>Combine the temperature and humidity columns, exclude windy, and keep all of the columns from the source table. <pre class="example"> -DROP TABLE IF EXISTS cols2vec_result, cols2vec_result_summary; -SELECT madlib.cols2vec( - 'golf', - 'cols2vec_result', - 'windy, temperature, humidity', - 'windy', - '*' -); -SELECT * FROM cols2vec_result ORDER BY id; -</pre> <pre class="result"> - id | OUTLOOK | temperature | humidity | Temp_Humidity | clouds_airquality | windy | class | observation_weight | feature_vector -----+----------+-------------+----------+---------------+-------------------+-------+------------+--------------------+---------------- - 1 | sunny | 85 | 85 | {85,85} | {none,unhealthy} | f | Don't Play | 5 | {85,85} - 2 | sunny | 80 | 90 | {80,90} | {none,moderate} | t | Don't Play | 5 | {80,90} - 3 | overcast | 83 | 78 | {83,78} | {low,moderate} | f | Play | 1.5 | {83,78} - 4 | rain | 70 | 96 | {70,96} | {low,moderate} | f | Play | 1 | {70,96} - 5 | rain | 68 | 80 | {68,80} | {medium,good} | f | Play | 1 | {68,80} - 6 | rain | 65 | 70 | {65,70} | {low,unhealthy} | t | Don't Play | 1 | {65,70} - 7 | overcast | 64 | 65 | {64,65} | {medium,moderate} | t | Play | 1.5 | {64,65} - 8 | sunny | 72 | 95 | {72,95} | {high,unhealthy} | f | Don't Play | 5 | {72,95} - 9 | sunny | 69 | 70 | {69,70} | {high,good} | f | Play | 5 | {69,70} - 10 | rain | 75 | 80 | {75,80} | {medium,good} | f | Play | 1 | {75,80} - 11 | sunny | 75 | 70 | {75,70} | {none,good} | t | Play | 5 | {75,70} - 12 | overcast | 72 | 90 | {72,90} | {medium,moderate} | t | Play | 1.5 | {72,90} - 13 | overcast | 81 | 75 | {81,75} | {medium,moderate} | f | Play | 1.5 | {81,75} - 14 | rain | 71 | 80 | {71,80} | {low,unhealthy} | t | Don't Play | 1 | {71,80} -(14 rows) -</pre> View the summary table: <pre class="example"> -\x on -SELECT * FROM cols2vec_result_summary; -\x off -</pre> <pre class="result"> --[ RECORD 1 ]---------------+----------------------------- -source_table | golf -list_of_features | windy, temperature, humidity -list_of_features_to_exclude | windy -feature_names | {temperature,humidity} -</pre> This also shows that you can exclude features in 'list_of_features_to_exclude' that are in the list of 'list_of_features'. This can be useful if the 'list_of_features' is generated from an expression or subquery.</li> -<li>Type casting works as per regular rules of the underlying database. <br /> -E.g, combining integer and double precisions columns will create a double precision feature vector. <br /> -For Boolean, do an explicit cast to the target type: <pre class="example"> -DROP TABLE IF EXISTS cols2vec_result, cols2vec_result_summary; -SELECT madlib.cols2vec( - 'golf', - 'cols2vec_result', - 'windy::TEXT, class', - NULL, - 'id' -); -SELECT * FROM cols2vec_result ORDER BY id; -</pre> <pre class="result"> - id | feature_vector -<br /> --—+-------------------— - 1 | {false,"Don't Play"} - 2 | {true,"Don't Play"} - 3 | {false,Play} - 4 | {false,Play} - 5 | {false,Play} - 6 | {true,"Don't Play"} - 7 | {true,Play} - 8 | {false,"Don't Play"} - 9 | {false,Play} - 10 | {false,Play} - 11 | {true,Play} - 12 | {true,Play} - 13 | {false,Play} - 14 | {true,"Don't Play"} -(14 rows) -</pre> </li> -</ol> -</div><!-- contents --> -</div><!-- doc-content --> -<!-- start footer part --> -<div id="nav-path" class="navpath"><!-- id is needed for treeview function! --> - <ul> - <li class="footer">Generated on Mon Aug 6 2018 21:55:39 for MADlib by - <a href="http://www.doxygen.org/index.html";> - <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.14 </li> - </ul> -</div> -</body> -</html>
