This is an automated email from the ASF dual-hosted git repository.
github-bot pushed a change to branch
dependabot/maven/com.fasterxml.jackson.core-jackson-databind-2.13.4.2
in repository https://gitbox.apache.org/repos/asf/systemds.git
omit 7fc44a8403 Bump jackson-databind from 2.13.4.1 to 2.13.4.2
add d52e0f1342 [SYSTEMDS-3512] Fix robustness decisionTree and randomForest
add 54363d725f [SYSTEMDS-3513] Multi-level reuse for GPU intermediates
add 6505c7b109 [MINOR] Improved dynamic recompilation (reduced recompile
overhead)
add 48cd678d1f [MINOR] Additional reduction of unnecessary recompilation
overhead
add e9a3cb36b0 [SYSTEMDS-3514] Fix parfor checkpoint injection and
recompilation
add b6831400c7 [MINOR] Fix centralMoment instruction generation
add 3b0293ba34 [MINOR] Fix parfor docs
add 85370c7b1d [SYSTEMDS-3277] Performance decisionTree/randomForest
(sparse vectors)
add ca72e4b03f [SYSTEMDS-2947] Re-enable lineage cache eviction from GPU
to host
add d39f745a85 [SYSTEMDS-3277] Performance decisionTree/randomForest
(vectorization)
add 75e7e64f22 [SYSTEMDS-3149] Fix misc issues decisionTree/randomForest
training
add af937bdccf [SYSTEMDS-3520] Error if multiple encoders applied on one
column
add a9cabbc87f [SYSTEMDS-3149] Robustness decisionTree/randomForest (many
feat values)
add 8d4c3feaa8 [MINOR] More decisionTree/randomForest tests, and
validation checks
add 40f2f7a053 [SYSTEMDS-3522] Add missing binning decoder to
transformdecode
add 4c97c1c376 [SYSTEMDS-3149] Additional RSS impurity measure for
regression trees
add dda37e795d [MINOR] Cleanup and Document PCA and Scale
add 107dae921d [MINOR] SIMD pom renamed and disabled
add 1329f3db21 [SYSTEMDS-3525] Binary Inplace Operations
add e11d20a59a [SYSTEMDS-3526] Transpose dense to sparse
add 06886ec5f7 [MINOR] Error from testUtils do not write more than the
first 10 errors.
add 9ef2e18b1a [SYSTEMDS-3527] CLA DeltaOffset Skip List
add 7146c05d6b [SYSTEMDS-3428] Code coverage in GitHub Actions (Java)
add d398c50227 [SYSTEMDS-3532] Parallel writer compressed
add ed48a7ff19 Bump jackson-databind from 2.13.4.1 to 2.13.4.2
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refs/heads/dependabot/maven/com.fasterxml.jackson.core-jackson-databind-2.13.4.2
(ed48a7ff19)
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No new revisions were added by this update.
Summary of changes:
.github/workflows/applicationTests.yml | 68 -
.github/workflows/componentTests.yml | 84 -
.github/workflows/functionsTests.yml | 95 -
.github/workflows/javaTests.yml | 236 +
.gitignore | 1 +
README.md | 6 +-
conf/SystemDS-config.xml.template | 2 +-
pom.xml | 21 +-
scripts/builtin/.imputeByMode.dml.swp | Bin 0 -> 12288 bytes
scripts/builtin/decisionTree.dml | 133 +-
scripts/builtin/decisionTreePredict.dml | 15 +-
scripts/builtin/lmPredict.dml | 2 +-
scripts/builtin/lmPredictStats.dml | 8 +-
scripts/builtin/pca.dml | 114 +-
scripts/builtin/randomForest.dml | 28 +-
scripts/builtin/randomForestPredict.dml | 2 +-
scripts/builtin/scale.dml | 56 +-
scripts/staging/SIMD-double-vectors/README.md | 7 +-
.../SIMD-double-vectors/{pom.xml => pom.xml.tmp} | 2 +
.../java/org/apache/sysds/hops/AggUnaryOp.java | 45 +-
src/main/java/org/apache/sysds/hops/BinaryOp.java | 93 +-
src/main/java/org/apache/sysds/hops/DataGenOp.java | 12 +-
.../apache/sysds/hops/ParameterizedBuiltinOp.java | 12 +
src/main/java/org/apache/sysds/hops/TernaryOp.java | 18 +-
.../apache/sysds/hops/recompile/Recompiler.java | 42 +-
.../apache/sysds/hops/rewrite/HopRewriteUtils.java | 4 +
src/main/java/org/apache/sysds/lops/Binary.java | 14 +-
.../java/org/apache/sysds/lops/CentralMoment.java | 10 +-
.../java/org/apache/sysds/lops/CoVariance.java | 3 +-
.../java/org/apache/sysds/lops/Compression.java | 3 +-
src/main/java/org/apache/sysds/lops/Ctable.java | 7 +-
.../apache/sysds/lops/CumulativeOffsetBinary.java | 24 +-
src/main/java/org/apache/sysds/lops/Data.java | 3 +-
.../java/org/apache/sysds/lops/DeCompression.java | 14 +-
src/main/java/org/apache/sysds/lops/Federated.java | 22 +-
.../java/org/apache/sysds/lops/FunctionCallCP.java | 3 +-
.../org/apache/sysds/lops/GroupedAggregate.java | 3 +-
src/main/java/org/apache/sysds/lops/LeftIndex.java | 3 +-
src/main/java/org/apache/sysds/lops/Local.java | 15 +-
src/main/java/org/apache/sysds/lops/MMCJ.java | 4 +-
src/main/java/org/apache/sysds/lops/MMTSJ.java | 3 +-
.../java/org/apache/sysds/lops/MapMultChain.java | 3 +-
src/main/java/org/apache/sysds/lops/Nary.java | 11 +-
src/main/java/org/apache/sysds/lops/PMMJ.java | 3 +-
.../apache/sysds/lops/ParameterizedBuiltin.java | 22 +-
.../java/org/apache/sysds/lops/PickByCount.java | 2 +-
.../java/org/apache/sysds/lops/RightIndex.java | 4 +-
.../java/org/apache/sysds/lops/SpoofFused.java | 3 +-
src/main/java/org/apache/sysds/lops/Sql.java | 3 +-
.../org/apache/sysds/lops/TernaryAggregate.java | 6 +-
src/main/java/org/apache/sysds/lops/Transform.java | 3 +-
src/main/java/org/apache/sysds/lops/Unary.java | 3 +-
.../apache/sysds/lops/WeightedCrossEntropy.java | 3 +-
.../java/org/apache/sysds/lops/WeightedDivMM.java | 3 +-
.../org/apache/sysds/lops/WeightedSigmoid.java | 3 +-
.../org/apache/sysds/lops/WeightedSquaredLoss.java | 3 +-
.../org/apache/sysds/lops/WeightedUnaryMM.java | 3 +-
.../java/org/apache/sysds/lops/compile/Dag.java | 9 +-
.../runtime/compress/CompressedMatrixBlock.java | 10 +-
.../sysds/runtime/compress/colgroup/AColGroup.java | 9 +-
.../compress/colgroup/AColGroupCompressed.java | 2 +-
.../runtime/compress/colgroup/AColGroupValue.java | 5 +
.../runtime/compress/colgroup/ColGroupConst.java | 13 +-
.../runtime/compress/colgroup/ColGroupDDC.java | 19 +-
.../runtime/compress/colgroup/ColGroupFactory.java | 4 +-
.../compress/colgroup/ColGroupSDCZeros.java | 25 +-
.../compress/colgroup/ColGroupUncompressed.java | 17 +-
.../colgroup/dictionary/DictionaryFactory.java | 2 +-
.../colgroup/dictionary/MatrixBlockDictionary.java | 6 +-
.../compress/colgroup/indexes/RangeIndex.java | 2 +-
.../compress/colgroup/indexes/SingleIndex.java | 2 +-
.../compress/colgroup/indexes/TwoIndex.java | 2 +-
.../compress/colgroup/mapping/AMapToData.java | 2 +-
.../compress/colgroup/offset/AIterator.java | 2 +-
.../runtime/compress/colgroup/offset/AOffset.java | 90 +-
.../compress/colgroup/offset/OffsetByte.java | 14 +-
.../compress/colgroup/offset/OffsetChar.java | 10 +-
.../compress/colgroup/offset/OffsetEmpty.java | 5 +
.../compress/colgroup/offset/OffsetSingle.java | 7 +
.../compress/colgroup/offset/OffsetTwo.java | 6 +
.../compress/colgroup/scheme/ACLAScheme.java | 57 +
.../compress/colgroup/scheme/ConstScheme.java | 108 +-
.../compress/colgroup/scheme/DDCScheme.java | 80 +-
.../scheme/{DDCScheme.java => DDCSchemeMC.java} | 107 +-
.../compress/colgroup/scheme/DDCSchemeSC.java | 154 +
.../compress/colgroup/scheme/EmptyScheme.java | 83 +-
.../compress/colgroup/scheme/ICLAScheme.java | 39 +-
.../compress/colgroup/scheme/SchemeFactory.java | 56 +
.../runtime/compress/io/ReaderCompressed.java | 7 +-
.../runtime/compress/io/WriterCompressed.java | 159 +-
.../runtime/compress/lib/CLALibBinaryCellOp.java | 249 +-
.../sysds/runtime/compress/lib/CLALibCombine.java | 50 +-
.../runtime/compress/lib/CLALibDecompress.java | 74 +-
.../runtime/compress/lib/CLALibRightMultBy.java | 8 +-
.../compress/plan/CompressionPlanFactory.java | 67 +
.../{utils/DCounts.java => plan/IPlanEncode.java} | 40 +-
.../runtime/compress/plan/NaivePlanEncode.java | 180 +
.../compress/readers/ReaderColumnSelection.java | 29 +-
.../ReaderColumnSelectionEmpty.java} | 26 +-
.../ReaderColumnSelectionSparseTransposed.java | 38 +-
.../compress/utils/{DCounts.java => ACount.java} | 51 +-
.../utils/{DCounts.java => CompressRDDClean.java} | 30 +-
.../sysds/runtime/compress/utils/DblArray.java | 6 +-
.../compress/utils/DblArrayCountHashMap.java | 33 +-
.../runtime/compress/utils/DoubleCountHashMap.java | 22 +
.../runtime/controlprogram/ParForProgramBlock.java | 7 +-
.../parfor/opt/OptimizationWrapper.java | 12 +-
.../controlprogram/parfor/opt/Optimizer.java | 5 +-
.../parfor/opt/OptimizerConstrained.java | 5 +-
.../parfor/opt/OptimizerRuleBased.java | 5 +-
.../sysds/runtime/instructions/Instruction.java | 2 +-
.../runtime/instructions/InstructionUtils.java | 22 +-
.../instructions/cp/BinaryCPInstruction.java | 2 +-
.../cp/BinaryMatrixMatrixCPInstruction.java | 62 +-
.../instructions/cp/VariableCPInstruction.java | 111 +-
.../instructions/gpu/context/CSRPointer.java | 11 +-
.../gpu/context/GPUMemoryEviction.java | 5 +-
.../instructions/gpu/context/GPUMemoryManager.java | 25 +-
.../instructions/gpu/context/GPUObject.java | 42 +-
.../instructions/spark/ReorgSPInstruction.java | 5 +-
.../functions/ExtractBlockForBinaryReblock.java | 2 +-
.../runtime/io/WriterBinaryBlockParallel.java | 1 -
.../apache/sysds/runtime/lineage/LineageCache.java | 16 +-
.../sysds/runtime/lineage/LineageCacheConfig.java | 2 +-
.../sysds/runtime/lineage/LineageCacheEntry.java | 15 +-
.../runtime/lineage/LineageGPUCacheEviction.java | 90 +-
.../runtime/matrix/data/LibMatrixBincell.java | 180 +-
.../sysds/runtime/matrix/data/LibMatrixReorg.java | 187 +-
.../runtime/matrix/operators/BinaryOperator.java | 159 +-
.../sysds/runtime/transform/decode/DecoderBin.java | 133 +
.../runtime/transform/decode/DecoderFactory.java | 12 +-
.../runtime/transform/encode/CompressedEncode.java | 6 -
.../runtime/transform/encode/EncoderFactory.java | 13 +-
.../apache/sysds/runtime/util/CollectionUtils.java | 23 +
.../sysds/runtime/util/ProgramConverter.java | 15 +-
src/test/java/org/apache/sysds/test/TestUtils.java | 10 +-
.../colgroup/scheme/CLAConstSchemeTest.java | 110 +-
.../compress/colgroup/scheme/CLADDCSchemeTest.java | 44 +-
.../colgroup/scheme/CLAEmptySchemeTest.java | 118 +-
.../sysds/test/component/compress/io/IOTest.java | 4 +-
.../component/compress/offset/LargeOffsetTest.java | 138 +
.../compress/plan/CustomEncodePlanTest.java | 143 +
.../compress/plan/EncodePerformanceTest.java | 86 +
.../component/compress/readers/ReadersTest.java | 5 +-
.../readers/ReadersTestCompareReaders.java | 49 +-
.../matrix/BinaryOperationInPlaceTest.java | 251 +-
.../BinaryOperationInPlaceTestParameterized.java | 190 +
.../test/component/matrix/TransposeCSRTest.java | 1 -
.../test/component/matrix/TransposeTwiceTest.java | 129 +
.../functions/async/MaxParallelizeOrderTest.java | 2 +
.../part1/BuiltinDecisionTreeRealDataTest.java | 123 +
.../functions/builtin/part2/BuiltinPCATest.java | 53 +-
.../test/functions/lineage/GPUFullReuseTest.java | 37 +-
.../lineage/GPULineageCacheEvictionTest.java | 21 +-
.../TransformFrameBuildMultithreadedTest.java | 9 +-
.../datasets/homes3/homes.tfspec_hash_recode.json | 2 +-
.../datasets/homes3/homes.tfspec_hash_recode2.json | 2 +-
src/test/resources/datasets/titanic/tfspec.json | 9 +
src/test/resources/datasets/titanic/titanic.csv | 625 ++
src/test/resources/datasets/wine/tfspec.json | 17 +
.../datasets/wine/winequality-red-white.csv | 6497 ++++++++++++++++++++
.../functions/builtin/decisionTreeRealData1.dml | 50 +
.../functions/builtin/decisionTreeRealData2.dml | 49 +
.../functions/builtin/decisionTreeRealData3.dml | 50 +
src/test/scripts/functions/builtin/pca2.dml | 38 +
src/test/scripts/functions/builtin/pca4.dml | 38 +
src/test/scripts/functions/builtin/pca5.dml | 38 +
.../functions/lineage/GPUCacheEviction3.dml | 60 +
.../{FullReuseGPU1.dml => LineageReuseGPU1.dml} | 0
.../{LineageTraceGPU1.dml => LineageReuseGPU2.dml} | 0
.../scripts/functions/lineage/LineageReuseGPU3.dml | 46 +
.../scripts/functions/lineage/LineageReuseGPU4.dml | 64 +
.../scripts/functions/lineage/LineageTraceGPU3.dml | 46 +
173 files changed, 11908 insertions(+), 1752 deletions(-)
delete mode 100644 .github/workflows/applicationTests.yml
delete mode 100644 .github/workflows/componentTests.yml
delete mode 100644 .github/workflows/functionsTests.yml
create mode 100644 .github/workflows/javaTests.yml
create mode 100644 scripts/builtin/.imputeByMode.dml.swp
rename scripts/staging/SIMD-double-vectors/{pom.xml => pom.xml.tmp} (99%)
create mode 100644
src/main/java/org/apache/sysds/runtime/compress/colgroup/scheme/ACLAScheme.java
copy
src/main/java/org/apache/sysds/runtime/compress/colgroup/scheme/{DDCScheme.java
=> DDCSchemeMC.java} (50%)
create mode 100644
src/main/java/org/apache/sysds/runtime/compress/colgroup/scheme/DDCSchemeSC.java
create mode 100644
src/main/java/org/apache/sysds/runtime/compress/colgroup/scheme/SchemeFactory.java
create mode 100644
src/main/java/org/apache/sysds/runtime/compress/plan/CompressionPlanFactory.java
copy src/main/java/org/apache/sysds/runtime/compress/{utils/DCounts.java =>
plan/IPlanEncode.java} (51%)
create mode 100644
src/main/java/org/apache/sysds/runtime/compress/plan/NaivePlanEncode.java
rename src/main/java/org/apache/sysds/runtime/compress/{utils/DArrCounts.java
=> readers/ReaderColumnSelectionEmpty.java} (58%)
copy src/main/java/org/apache/sysds/runtime/compress/utils/{DCounts.java =>
ACount.java} (57%)
rename src/main/java/org/apache/sysds/runtime/compress/utils/{DCounts.java =>
CompressRDDClean.java} (60%)
create mode 100644
src/main/java/org/apache/sysds/runtime/transform/decode/DecoderBin.java
create mode 100644
src/test/java/org/apache/sysds/test/component/compress/offset/LargeOffsetTest.java
create mode 100644
src/test/java/org/apache/sysds/test/component/compress/plan/CustomEncodePlanTest.java
create mode 100644
src/test/java/org/apache/sysds/test/component/compress/plan/EncodePerformanceTest.java
create mode 100644
src/test/java/org/apache/sysds/test/component/matrix/BinaryOperationInPlaceTestParameterized.java
create mode 100644
src/test/java/org/apache/sysds/test/component/matrix/TransposeTwiceTest.java
create mode 100644
src/test/java/org/apache/sysds/test/functions/builtin/part1/BuiltinDecisionTreeRealDataTest.java
create mode 100644 src/test/resources/datasets/titanic/tfspec.json
create mode 100644 src/test/resources/datasets/titanic/titanic.csv
create mode 100644 src/test/resources/datasets/wine/tfspec.json
create mode 100644 src/test/resources/datasets/wine/winequality-red-white.csv
create mode 100644 src/test/scripts/functions/builtin/decisionTreeRealData1.dml
create mode 100644 src/test/scripts/functions/builtin/decisionTreeRealData2.dml
create mode 100644 src/test/scripts/functions/builtin/decisionTreeRealData3.dml
create mode 100644 src/test/scripts/functions/builtin/pca2.dml
create mode 100644 src/test/scripts/functions/builtin/pca4.dml
create mode 100644 src/test/scripts/functions/builtin/pca5.dml
create mode 100644 src/test/scripts/functions/lineage/GPUCacheEviction3.dml
copy src/test/scripts/functions/lineage/{FullReuseGPU1.dml =>
LineageReuseGPU1.dml} (100%)
copy src/test/scripts/functions/lineage/{LineageTraceGPU1.dml =>
LineageReuseGPU2.dml} (100%)
create mode 100644 src/test/scripts/functions/lineage/LineageReuseGPU3.dml
create mode 100644 src/test/scripts/functions/lineage/LineageReuseGPU4.dml
create mode 100644 src/test/scripts/functions/lineage/LineageTraceGPU3.dml
