http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/ProvModel.java ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/ProvModel.java b/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/ProvModel.java deleted file mode 100644 index e1bfab7..0000000 --- a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/ProvModel.java +++ /dev/null @@ -1,402 +0,0 @@ -package org.purl.wf4ever.provtaverna.owl; - -import java.io.InputStream; -import java.net.URI; -import java.util.Calendar; - -import org.apache.jena.riot.IO_Jena; -import org.apache.jena.riot.system.IO_JenaWriters; -import org.apache.log4j.Logger; - -import com.hp.hpl.jena.ontology.DatatypeProperty; -import com.hp.hpl.jena.ontology.Individual; -import com.hp.hpl.jena.ontology.ObjectProperty; -import com.hp.hpl.jena.ontology.OntClass; -import com.hp.hpl.jena.ontology.OntDocumentManager; -import com.hp.hpl.jena.ontology.OntModel; -import com.hp.hpl.jena.ontology.OntModelSpec; -import com.hp.hpl.jena.rdf.model.Literal; -import com.hp.hpl.jena.rdf.model.Model; -import com.hp.hpl.jena.rdf.model.ModelFactory; -import com.hp.hpl.jena.util.FileManager; -import com.hp.hpl.jena.util.LocationMapper; - -public class ProvModel { - - private static Logger logger = Logger.getLogger(ProvModel.class); - - private static final String EMPTY_PREFIX = ""; - - protected static final OntModelSpec DEFAULT_ONT_MODEL_SPEC = OntModelSpec.OWL_MEM_RDFS_INF; - - protected static final String FOAF_0_1 = "http://xmlns.com/foaf/0.1/";; - - protected static final String FOAF_RDF = "foaf.rdf"; - protected static final String ORE = "http://www.openarchives.org/ore/terms/";; - protected static final String PAV = "http://purl.org/pav/";; - protected static final String PAV_RDF = "pav.rdf"; - - protected static final String PROV = "http://www.w3.org/ns/prov#";; - protected static final String PROV_AQ_RDF = "prov-aq.rdf"; - protected static final String PROV_DICTIONARY = "http://www.w3.org/ns/prov-dictionary#";; - protected static final String PROV_DICTIONARY_TTL = "prov-dictionary.ttl"; - protected static final String PROV_O = "http://www.w3.org/ns/prov-o#";; - protected static final String PROV_O_RDF = "prov-o.rdf"; - - protected static final String RO = "http://purl.org/wf4ever/ro#";; - - public OntClass Activity; - public OntClass Association; - public OntClass Bundle; - public OntClass Collection; - public OntClass Communication; - public OntClass Dictionary; - public OntClass EmptyCollection; - public OntClass EmptyDictionary; - public OntClass End; - public OntClass Entity; - public OntClass Generation; - public OntClass KeyEntityPair; - public OntClass Plan; - public OntClass Role; - public OntClass Start; - public OntClass Usage; - - public ObjectProperty activity; - public ObjectProperty agent; - public ObjectProperty entity; - public ObjectProperty hadDictionaryMember; - public ObjectProperty hadMember; - public ObjectProperty hadPlan; - public ObjectProperty hadRole; - public ObjectProperty pairEntity; - public ObjectProperty qualifiedAssociation; - public ObjectProperty qualifiedCommunication; - public ObjectProperty qualifiedEnd; - public ObjectProperty qualifiedGeneration; - public ObjectProperty qualifiedStart; - public ObjectProperty qualifiedUsage; - public ObjectProperty used; - public ObjectProperty wasAssociatedWith; - public ObjectProperty wasDerivedFrom; - public ObjectProperty wasGeneratedBy; - public ObjectProperty wasInformedBy; - - public DatatypeProperty atTime; - public DatatypeProperty endedAtTime; - public DatatypeProperty pairKey; - public DatatypeProperty startedAtTime; - - public OntModel model; - - private static boolean jenaFileManagerInitialized = false; - - protected OntModel prov; - protected OntModel provDict; - - public ProvModel() { - this(ModelFactory.createOntologyModel(DEFAULT_ONT_MODEL_SPEC)); - } - - public ProvModel(Model model) { - String defaultPrefix = model.getNsPrefixURI(EMPTY_PREFIX); - OntModel ontModel; - if (model instanceof OntModel) { - ontModel = (OntModel) model; - } else { - OntModelSpec spec = DEFAULT_ONT_MODEL_SPEC; - ontModel = ModelFactory.createOntologyModel(spec, model); - } - setModel(ontModel); - resetJena(); - initializeJenaFileManager(); - loadOntologies(); - - if (defaultPrefix != null) { - // Restore the defaultPrefix (:) - model.setNsPrefix(EMPTY_PREFIX, defaultPrefix); - } else { - model.removeNsPrefix(EMPTY_PREFIX); - } - } - - private void initializeJenaFileManager() { - if (! jenaFileManagerInitialized) { - // Only initialize once to avoid adding the same locators - // (but no need to synchronize, the occassional extra should be ok) - jenaFileManagerInitialized = true; - // So that it can find our location-mapping.n3 - // and the OWLs in classpath /org/purl/wf4ever/provtaverna/owl/ - FileManager.get().addLocatorClassLoader(getClass().getClassLoader()); - - Model mapping = ModelFactory.createDefaultModel(); - InputStream mappingStream = getClass().getResourceAsStream("/location-mapping.n3"); - mapping.read(mappingStream, "", "N3"); - - FileManager.get().setLocationMapper(new LocationMapper(mapping)); - - OntDocumentManager.getInstance().setFileManager(FileManager.get()); - } - } - - public void resetJena() { - IO_Jena.resetJena(); - } - - public void addKeyPair(Individual dictionary, long position, - Individual listItem) { - dictionary.addProperty(hadMember, listItem); - Individual keyPair = model.createIndividual(KeyEntityPair); - keyPair.addProperty(pairEntity, listItem); - keyPair.addLiteral(pairKey, position); - dictionary.addProperty(hadDictionaryMember, keyPair); - - } - - protected void checkNotNull(OntModel model, Object... possiblyNulls) { - int i = 0; - for (Object check : possiblyNulls) { - if (check == null) { - throw new IllegalStateException("Could not load term #" + i - + " from ontology"); - } - i++; - } - - } - - public Individual createActivity(URI uri) { - return model.createIndividual(uri.toASCIIString(), Activity); - } - - public Individual createBundle(URI uri) { - return model.createIndividual(uri.toASCIIString(), Bundle); - } - - public Individual createDictionary(URI uri) { - Individual artifact = createEntity(uri); - artifact.addRDFType(Collection); - artifact.addRDFType(Dictionary); - return artifact; - } - - public Individual createEntity(URI uri) { - return model.createIndividual(uri.toASCIIString(), Entity); - } - - public Individual createPlan(URI planUri) { - return model.createIndividual(planUri.toString(), Plan); - } - - public Individual createRole(URI uri) { - return model.createIndividual(uri.toASCIIString(), Role); - } - - public OntModel getModel() { - return model; - } - - public void loadOntologies() { - loadPROVO(); - loadProvDictionary(); - model.setNsPrefixes(prov); - } - - protected OntModel loadOntologyFromClasspath(String classPathUri, String uri) { - - OntModel ontModel = ModelFactory.createOntologyModel(); - - // Load from classpath - InputStream inStream = getClass().getResourceAsStream(classPathUri); - if (inStream == null) { - throw new IllegalArgumentException("Can't load " + classPathUri); - } - // Ontology ontology = ontModel.createOntology(uri); - if (classPathUri.endsWith(".ttl")) { - ontModel.read(inStream, uri, "TURTLE"); - } else { - ontModel.read(inStream, uri); - } - return ontModel; - } - - protected synchronized void loadProvDictionary() { - if (provDict != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath(PROV_DICTIONARY_TTL, - PROV_DICTIONARY); - - hadDictionaryMember = ontModel.getObjectProperty(PROV - + "hadDictionaryMember"); - pairEntity = ontModel.getObjectProperty(PROV + "pairEntity"); - pairKey = ontModel.getDatatypeProperty(PROV + "pairKey"); - - Dictionary = ontModel.getOntClass(PROV + "Dictionary"); - EmptyDictionary = ontModel.getOntClass(PROV + "EmptyDictionary"); - KeyEntityPair = ontModel.getOntClass(PROV + "KeyEntityPair"); - - checkNotNull(ontModel, hadDictionaryMember, pairEntity, pairKey, - Dictionary, EmptyDictionary, KeyEntityPair); - - provDict = ontModel; - } - - protected synchronized void loadPROVO() { - if (prov != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath(PROV_O_RDF, PROV_O); - ontModel.setNsPrefix("prov", PROV_O); - wasDerivedFrom = ontModel.getObjectProperty(PROV + "wasDerivedFrom"); - wasAssociatedWith = ontModel.getObjectProperty(PROV - + "wasAssociatedWith"); - qualifiedAssociation = ontModel.getObjectProperty(PROV - + "qualifiedAssociation"); - wasGeneratedBy = ontModel.getObjectProperty(PROV + "wasGeneratedBy"); - qualifiedGeneration = ontModel.getObjectProperty(PROV - + "qualifiedGeneration"); - used = ontModel.getObjectProperty(PROV + "used"); - qualifiedUsage = ontModel.getObjectProperty(PROV + "qualifiedUsage"); - wasInformedBy = ontModel.getObjectProperty(PROV + "wasInformedBy"); - qualifiedCommunication = ontModel.getObjectProperty(PROV - + "qualifiedCommunication"); - qualifiedStart = ontModel.getObjectProperty(PROV + "qualifiedStart"); - qualifiedEnd = ontModel.getObjectProperty(PROV + "qualifiedEnd"); - hadMember = ontModel.getObjectProperty(PROV + "hadMember"); - - agent = ontModel.getObjectProperty(PROV + "agent"); - entity = ontModel.getObjectProperty(PROV + "entity"); - activity = ontModel.getObjectProperty(PROV + "activity"); - hadPlan = ontModel.getObjectProperty(PROV + "hadPlan"); - hadRole = ontModel.getObjectProperty(PROV + "hadRole"); - - startedAtTime = ontModel.getDatatypeProperty(PROV + "startedAtTime"); - endedAtTime = ontModel.getDatatypeProperty(PROV + "endedAtTime"); - atTime = ontModel.getDatatypeProperty(PROV + "atTime"); - - Bundle = ontModel.getOntClass(PROV + "Bundle"); - Entity = ontModel.getOntClass(PROV + "Entity"); - Activity = ontModel.getOntClass(PROV + "Activity"); - Start = ontModel.getOntClass(PROV + "Start"); - End = ontModel.getOntClass(PROV + "End"); - - Association = ontModel.getOntClass(PROV + "Association"); - Plan = ontModel.getOntClass(PROV + "Plan"); - Role = ontModel.getOntClass(PROV + "Role"); - - Generation = ontModel.getOntClass(PROV + "Generation"); - Usage = ontModel.getOntClass(PROV + "Usage"); - Communication = ontModel.getOntClass(PROV + "Communication"); - Collection = ontModel.getOntClass(PROV + "Collection"); - EmptyCollection = ontModel.getOntClass(PROV + "EmptyCollection"); - - checkNotNull(ontModel, wasDerivedFrom, wasAssociatedWith, - qualifiedAssociation, wasGeneratedBy, qualifiedGeneration, - used, qualifiedUsage, wasInformedBy, qualifiedCommunication, - agent, entity, activity, hadPlan, hadMember, hadRole, - startedAtTime, endedAtTime, atTime, qualifiedStart, - qualifiedEnd, - - Bundle, Entity, Activity, Association, Plan, Role, Generation, - Usage, Communication, Start, End, Collection, EmptyCollection); - prov = ontModel; - } - - public void setEmptyDictionary(Individual dictionary) { - dictionary.addRDFType(EmptyCollection); - dictionary.addRDFType(EmptyDictionary); - } - - public Individual setEndedAtTime(Individual endedActivity, Calendar time) { - if (time == null) { - logger.warn("Unknown end time"); - return null; - } - return setEndedAtTime(endedActivity, model.createTypedLiteral(time)); - } - - public Individual setEndedAtTime(Individual endedActivity, Literal time) { - if (time == null) { - logger.warn("Unknown end time"); - return null; - } - endedActivity.addLiteral(endedAtTime, time); - Individual end = model.createIndividual(End); - endedActivity.setPropertyValue(qualifiedEnd, end); - end.addLiteral(atTime, time); - return end; - } - - public void setModel(OntModel model) { - this.model = model; - } - - public void setRole(Individual involvement, Individual role) { - involvement.addProperty(hadRole, role); - - } - - public Individual setStartedAtTime(Individual startedActivity, Calendar time) { - if (time == null) { - logger.warn("Unknown start time"); - return null; - } - return setStartedAtTime(startedActivity, model.createTypedLiteral(time)); - } - - public Individual setStartedAtTime(Individual startedActivity, Literal time) { - if (time == null) { - logger.warn("Unknown start time"); - return null; - } - startedActivity.addLiteral(startedAtTime, time); - Individual start = model.createIndividual(Start); - startedActivity.setPropertyValue(qualifiedStart, start); - start.addLiteral(atTime, time); - return start; - } - - public Individual setUsed(Individual activity, Individual usedEntity) { - activity.addProperty(used, usedEntity); - Individual usage = model.createIndividual(Usage); - activity.addProperty(qualifiedUsage, usage); - usage.addProperty(entity, usedEntity); - return usage; - } - - public Individual setWasAssociatedWith(Individual activity, - Individual associatedAgent, Individual plan) { - activity.setPropertyValue(wasAssociatedWith, associatedAgent); - Individual association = model.createIndividual(Association); - activity.setPropertyValue(qualifiedAssociation, association); - association.setPropertyValue(agent, associatedAgent); - if (plan != null) { - association.setPropertyValue(hadPlan, plan); - } - return association; - } - - public void setWasDerivedFrom(Individual derived, Individual original) { - derived.addProperty(wasDerivedFrom, original); - } - - public Individual setWasGeneratedBy(Individual generated, - Individual generatingActivity) { - generated.setPropertyValue(wasGeneratedBy, generatingActivity); - Individual generation = model.createIndividual(Generation); - generated.setPropertyValue(qualifiedGeneration, generation); - generation.setPropertyValue(activity, generatingActivity); - return generation; - - } - - public Individual setWasInformedBy(Individual informed, Individual informer) { - informed.setPropertyValue(wasInformedBy, informer); - Individual communication = model.createIndividual(Communication); - informed.setPropertyValue(qualifiedCommunication, communication); - communication.setPropertyValue(activity, informer); - return communication; - } - -}
http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/TavernaProvModel.java ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/TavernaProvModel.java b/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/TavernaProvModel.java deleted file mode 100644 index b0f0766..0000000 --- a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/TavernaProvModel.java +++ /dev/null @@ -1,112 +0,0 @@ -package org.purl.wf4ever.provtaverna.owl; - -import java.net.URI; - -import com.hp.hpl.jena.ontology.DatatypeProperty; -import com.hp.hpl.jena.ontology.Individual; -import com.hp.hpl.jena.ontology.ObjectProperty; -import com.hp.hpl.jena.ontology.OntClass; -import com.hp.hpl.jena.ontology.OntModel; - -public class TavernaProvModel extends WfprovModel { - protected static final String CNT = "http://www.w3.org/2011/content#";; - - protected static final String TAVERNAPROV = "http://ns.taverna.org.uk/2012/tavernaprov/";; - - protected static final String TAVERNAPROV_TTL = "taverna-prov.ttl"; - - public ObjectProperty content; - - public OntClass Content; - public OntClass ContentAsBase64; - public OntClass ContentAsText; - public OntClass Error; - public OntClass TavernaEngine; - - public OntModel cnt; - public OntModel tavernaProv; - - public DatatypeProperty byteCount; - public DatatypeProperty bytes; - public DatatypeProperty characterEncoding; - public DatatypeProperty chars; - public DatatypeProperty errorMessage; - public DatatypeProperty sha1; - public DatatypeProperty sha512; - public DatatypeProperty stackTrace; - - public Individual createTavernaEngine(URI uri) { - Individual engine = model.createIndividual(uri.toASCIIString(), TavernaEngine); - return engine; - } - - private void loadCnt() { - if (cnt != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath("content.owl", CNT); - - bytes = ontModel.getDatatypeProperty(CNT + "bytes"); - chars = ontModel.getDatatypeProperty(CNT + "chars"); - characterEncoding = ontModel.getDatatypeProperty(CNT + "characterEncoding"); - - ContentAsText = ontModel.getOntClass(CNT + "ContentAsText"); - ContentAsBase64 = ontModel.getOntClass(CNT + "ContentAsBase64"); - checkNotNull(ontModel, bytes, chars, characterEncoding, ContentAsText, ContentAsBase64); - cnt = ontModel; - - } - - @Override - public void loadOntologies() { - super.loadOntologies(); - loadCnt(); - loadTavernaProv(); - model.setNsPrefixes(tavernaProv); - - } - - protected synchronized void loadTavernaProv() { - if (tavernaProv != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath(TAVERNAPROV_TTL, TAVERNAPROV); - - content = ontModel.getObjectProperty(TAVERNAPROV + "content"); - - byteCount = ontModel.getDatatypeProperty(TAVERNAPROV + "byteCount"); - sha1 = ontModel.getDatatypeProperty(TAVERNAPROV + "sha1"); - sha512 = ontModel.getDatatypeProperty(TAVERNAPROV + "sha512"); - stackTrace = ontModel.getDatatypeProperty(TAVERNAPROV + "stackTrace"); - errorMessage = ontModel.getDatatypeProperty(TAVERNAPROV + "errorMessage"); - - Content = ontModel.getOntClass(TAVERNAPROV + "Content"); - Error = ontModel.getOntClass(TAVERNAPROV + "Error"); - TavernaEngine = ontModel.getOntClass(TAVERNAPROV + "TavernaEngine"); - - checkNotNull(ontModel, content, Content, byteCount,sha1, sha512, stackTrace, errorMessage, Content, Error, TavernaEngine); - tavernaProv = ontModel; - } - - - public Individual setContent(Individual entity, URI uri) { - Individual cont = model.createIndividual(uri.toASCIIString(), Content); - entity.setPropertyValue(content, cont); - return cont; - } - - - public Individual createError(URI errorURI) { - return model.createIndividual(errorURI.toASCIIString(), Error); - } - - - - - - - - - - -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/WfprovModel.java ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/WfprovModel.java b/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/WfprovModel.java deleted file mode 100644 index f20542b..0000000 --- a/taverna-prov-owl-bindings/src/main/java/org/purl/wf4ever/provtaverna/owl/WfprovModel.java +++ /dev/null @@ -1,202 +0,0 @@ -package org.purl.wf4ever.provtaverna.owl; - -import java.net.URI; - -import com.hp.hpl.jena.ontology.Individual; -import com.hp.hpl.jena.ontology.ObjectProperty; -import com.hp.hpl.jena.ontology.OntClass; -import com.hp.hpl.jena.ontology.OntModel; -import com.hp.hpl.jena.rdf.model.ModelFactory; - -public class WfprovModel extends ProvModel { - - private static final String DCTERMS = "http://purl.org/dc/terms/";; - private static final String WFPROV_OWL = "wfprov.owl"; - private static final String WFPROV = "http://purl.org/wf4ever/wfprov#";; - - private static final String WFDESC_OWL = "wfdesc.owl"; - private static final String WFDESC = "http://purl.org/wf4ever/wfdesc#";; - - protected OntModel wfdesc; - protected OntModel wfprov; - - protected OntClass Process; - protected OntClass Workflow; - protected OntClass WorkflowRun; - - protected ObjectProperty wasEnactedBy; - protected ObjectProperty describedByProcess; - protected ObjectProperty describedByWorkflow; - protected OntClass ProcessRun; - protected ObjectProperty wasPartOfWorkflowRun; - protected ObjectProperty hasPart; - protected OntModel dcterms; - protected ObjectProperty hasSubProcess; - protected OntClass Artifact; - protected ObjectProperty wasOutputFrom; - protected ObjectProperty usedInput; - protected OntClass Output; - protected OntClass Input; - protected ObjectProperty describedByParameter; - - - @Override - public void loadOntologies() { - super.loadOntologies(); - loadDcTerms(); - loadWfDesc(); - loadWfprov(); - model.setNsPrefixes(wfprov); - } - - protected synchronized void loadDcTerms() { - if (dcterms != null) { - return; - } - // As http://purl.org/dc/terms/ pulls in various rubbish we cheat - OntModel ontModel = ModelFactory.createOntologyModel(); - hasPart = ontModel.createObjectProperty(DCTERMS + "hasPart"); - checkNotNull(ontModel, hasPart); - dcterms = ontModel; - } - - - protected synchronized void loadWfDesc() { - if (wfdesc != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath(WFDESC_OWL, WFDESC); - - hasSubProcess = ontModel.getObjectProperty(WFDESC + "hasSubProcess"); - Input = ontModel.getOntClass(WFDESC + "Input"); -// Input.addSuperClass(Role); - Output = ontModel.getOntClass(WFDESC + "Output"); -// Output.addSuperClass(Role); - - Process = ontModel.getOntClass(WFDESC + "Process"); - Workflow = ontModel.getOntClass(WFDESC + "Workflow"); - checkNotNull(ontModel, hasSubProcess, Process, Workflow, Input, Output); - - wfdesc = ontModel; - } - - protected synchronized void loadWfprov() { - if (wfprov != null) { - return; - } - OntModel ontModel = loadOntologyFromClasspath(WFPROV_OWL, WFPROV); - - wasEnactedBy = ontModel.getObjectProperty(WFPROV + "wasEnactedBy"); -// wasEnactedBy.addSuperProperty(wasAssociatedWith); - describedByWorkflow = ontModel.getObjectProperty(WFPROV + "describedByWorkflow"); - describedByProcess = ontModel.getObjectProperty(WFPROV + "describedByProcess"); - describedByParameter = ontModel.getObjectProperty(WFPROV + "describedByParameter"); - usedInput = ontModel.getObjectProperty(WFPROV + "usedInput"); - wasOutputFrom = ontModel.getObjectProperty(WFPROV + "wasOutputFrom"); - - wasPartOfWorkflowRun = ontModel.getObjectProperty(WFPROV + "wasPartOfWorkflowRun"); -// wasPartOfWorkflowRun.addSuperProperty(hasPart); - - Artifact = ontModel.getOntClass(WFPROV + "Artifact"); -// Artifact.addSuperClass(Entity); - ProcessRun = ontModel.getOntClass(WFPROV + "ProcessRun"); -// ProcessRun.addSuperClass(Activity); - WorkflowRun = ontModel.getOntClass(WFPROV + "WorkflowRun"); - - checkNotNull(ontModel, wasEnactedBy, describedByWorkflow, describedByProcess, - describedByParameter, - wasPartOfWorkflowRun, usedInput, wasOutputFrom, - Artifact, ProcessRun, WorkflowRun); - wfprov = ontModel; - } - - public Individual createWorkflowRun(URI runURI) { - Individual a = createActivity(runURI); - a.setRDFType(WorkflowRun); - return a; - } - - public Individual createProcessRun(URI processURI) { - Individual a = createActivity(processURI); - a.setRDFType(ProcessRun); - return a; - } - - public void setWasPartOfWorkflowRun(Individual process, - Individual parentProcess) { - process.addProperty(wasPartOfWorkflowRun, parentProcess); - parentProcess.addProperty(hasPart, process); - } - - public Individual setWasEnactedBy(Individual workflowRun, Individual workflowEngine, Individual wfplan) { - Individual association = setWasAssociatedWith(workflowRun, workflowEngine, wfplan); - workflowRun.addProperty(wasEnactedBy, workflowEngine); - return association; - } - - public void setDescribedByWorkflow(Individual workflowRun, Individual wfplan) { - workflowRun.addProperty(describedByWorkflow, wfplan); - } - - public void addSubProcess(Individual wf, Individual proc) { -// parentWf.getWfdescHasSubProcesses().add(procPlan); -// objCon.addDesignation(parentWf, Resource.class).getDctermsHasPart().add(procPlan); - wf.addProperty(hasSubProcess, proc); - wf.addProperty(hasPart, proc); - } - - - public void setDescribedByProcess(Individual processRun, Individual processPlan) { - processRun.addProperty(describedByProcess, processPlan); - } - - - public Individual createWorkflow(URI wfUri) { - Individual wfplan = createPlan(wfUri); - wfplan.addRDFType(Workflow); - return wfplan; - } - public Individual createProcess(URI processUri) { - Individual wfplan = createPlan(processUri); - wfplan.addRDFType(Process); - return wfplan; - } - - public Individual createArtifact(URI dataURI) { - Individual entity = createEntity(dataURI); - entity.addRDFType(Artifact); - return entity; - } - - - public Individual setUsedInput(Individual activity, Individual entity) { - Individual usage = setUsed(activity, entity); - activity.addProperty(usedInput, entity); - return usage; - } - - public Individual setWasOutputFrom(Individual entity, Individual activity) { - Individual usage = setWasGeneratedBy(entity, activity); - entity.addProperty(wasOutputFrom, activity); - return usage; - } - - public Individual createInputParameter(URI portURI) { - Individual parameter = createRole(portURI); - parameter.addRDFType(Input); - return parameter; - } - - - public Individual createOutputParameter(URI portURI) { - Individual parameter = createRole(portURI); - parameter.addRDFType(Output); - return parameter; - } - - public void setDescribedByParameter(Individual entity, Individual portRole, Individual involvement) { - setRole(involvement, portRole); - entity.addProperty(describedByParameter, portRole); - } - -} http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/location-mapping.n3 ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/location-mapping.n3 b/taverna-prov-owl-bindings/src/main/resources/location-mapping.n3 deleted file mode 100644 index 69f4d08..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/location-mapping.n3 +++ /dev/null @@ -1,36 +0,0 @@ -@prefix lm: <http://jena.hpl.hp.com/2004/08/location-mapping#> . - -[] lm:mapping - [ lm:name "http://purl.org/ao/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/annotation-core.owl" ] , - [ lm:name "http://purl.org/ao/core/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/annotation-core.owl" ] , - [ lm:name "http://www.w3.org/2011/content"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/content.owl" ] , - [ lm:name "http://purl.org/NET/dc_owl2dl/dcam"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/dcam.owl" ], - [ lm:name "http://purl.org/wf4ever/dcam"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/dcam.owl" ] , - [ lm:name "http://purl.org/dc/terms/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/dcterms_od.owl" ], - [ lm:name "http://purl.org/NET/dc_owl2dl/terms_od"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/dcterms_od.owl" ] , - [ lm:name "http://xmlns.com/foaf/0.1/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/foaf.rdf" ] , - [ lm:name "http://purl.org/wf4ever/ore-owl"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/ore-owl.owl" ] , - [ lm:name "http://purl.org/pav/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/pav.owl" ] , - [ lm:name "http://purl.org/pav/2.0/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/pav.owl" ] , - [ lm:name "http://purl.org/pav/2.1"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/pav.owl" ] , - [ lm:name "http://www.w3.org/ns/prov#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/prov-o.rdf" ] , - [ lm:name "http://www.w3.org/ns/prov-o#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/prov-o.rdf" ] , - [ lm:name "http://www.w3.org/ns/prov-aq#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/prov-aq.rdf" ] , - [ lm:name "http://www.w3.org/ns/prov-dictionary#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/prov-dictionary.rdf" ] , - [ lm:name "http://purl.org/wf4ever/ro"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/ro.owl" ] , - [ lm:name "http://purl.org/wf4ever/ro#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/ro.owl" ] , - [ lm:name "http://purl.org/wf4ever/roevo"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/roevo.owl" ] , - [ lm:name "http://purl.org/wf4ever/roevo#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/roevo.owl" ] , - [ lm:name "http://ns.taverna.org.uk/2010/scufl2"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/scufl2.rdf" ] , - [ lm:name "http://ns.taverna.org.uk/2010/scufl2#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/scufl2.owl" ] , - [ lm:name "http://www.w3.org/2004/02/skos/core"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/skos-owl1-dl.rdf" ] , - [ lm:name "http://www.w3.org/TR/skos-reference/skos-owl1-dl.rdf"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/skos-owl1-dl.rdf" ] , - [ lm:name "http://ns.taverna.org.uk/2012/tavernaprov/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/taverna-prov.owl" ] , - [ lm:name "http://www.openarchives.org/ore/terms/"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/terms.rdf" ] , - [ lm:name "http://purl.org/wf4ever/wf4ever"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wf4ever.owl" ] , - [ lm:name "http://purl.org/wf4ever/wf4ever#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wf4ever.owl" ] , - [ lm:name "http://purl.org/wf4ever/wfdesc"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wfdesc.owl" ] , - [ lm:name "http://purl.org/wf4ever/wfdesc#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wfdesc.owl" ] , - [ lm:name "http://purl.org/wf4ever/wfprov"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wfprov.owl" ] , - [ lm:name "http://purl.org/wf4ever/wfprov#"; ; lm:altName "org/purl/wf4ever/provtaverna/owl/wfprov.owl" ] - . http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/.gitignore ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/.gitignore b/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/.gitignore deleted file mode 100644 index fe73470..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/.gitignore +++ /dev/null @@ -1 +0,0 @@ -/catalog-v001.xml http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation-core.owl ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation-core.owl b/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation-core.owl deleted file mode 100644 index e5521be..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation-core.owl +++ /dev/null @@ -1,399 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> - -<!-- Created by Paolo Ciccarese http://www.paolociccarese.info on April 12th, 2010 --> - -<!DOCTYPE rdf:RDF [ - <!-- Other namespaces --> - <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#"; > - <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#"; > - <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#"; > - <!ENTITY owl "http://www.w3.org/2002/07/owl#"; > - <!ENTITY dct "http://dublincore.org/documents/dcmi-terms/"; > - <!ENTITY foaf "http://xmlns.com/foaf/0.1/";> - <!ENTITY pav "http://purl.org/pav/";> - - <!-- Ontology --> - <!ENTITY ontology "http://purl.org/ao/core/"; > - - <!-- Main namespace --> - <!ENTITY annotation-core "http://purl.org/ao/"; > -]> - -<rdf:RDF - xml:base="&annotation-core;" - xmlns="&annotation-core;" - xmlns:pav="&pav;" - xmlns:rdfs="&rdfs;" - xmlns:owl="&owl;" - xmlns:rdf="&rdf;" - xmlns:xsd="&xsd;" - xmlns:dct="&dct;" - xmlns:foaf="&foaf;"> - - <owl:Ontology rdf:about="&ontology;"> - <rdf:type rdf:resource="&owl;Ontology"/> - <rdfs:label rdf:datatype="&xsd;string">Annotation Ontology Core v. 1.0</rdfs:label> - - <owl:imports rdf:resource="http://purl.org/pav/2.0/"/> - - <dct:language>en</dct:language> - <dct:title xml:lang="en">Annotation Ontology Core</dct:title> - <dct:creator rdf:resource="http://www.hcklab.org/foaf.rdf#me"/> - <dct:publisher rdf:resource="http://www.mindinformatics.org"/> - <dct:contributor rdf:datatype="&xsd;string">Paolo Ciccarese</dct:contributor> - <dct:contributor rdf:datatype="&xsd;string">Marco Ocana</dct:contributor> - <dct:created rdf:datatype="&xsd;string">April 12, 2010</dct:created> - <dct:date rdf:datatype="&xsd;string">May 9, 2010</dct:date> - <dct:format rdf:datatype="&xsd;string">rdf/xml</dct:format> - </owl:Ontology> - - <!-- - /////////////////////////////////////////////////////////////////////////////////////// - // - // Annotation Properties - // - /////////////////////////////////////////////////////////////////////////////////////// - --> - - <rdf:Description rdf:about="&dct;title"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;created"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;date"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;creator"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;format"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;language"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;publisher"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;contributor"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - - <!-- - /////////////////////////////////////////////////////////////////////////////////////// - // - // Annotation Ontology Classes - // - /////////////////////////////////////////////////////////////////////////////////////// - --> - - <owl:Class rdf:about="Annotation" rdfs:label="(ao) Annotation"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - <owl:disjointWith rdf:resource="AnnotationCuration"/> - <owl:disjointWith rdf:resource="Selector"/> - <owl:disjointWith rdf:resource="AnnotationSet"/> - <owl:disjointWith rdf:resource="DocumentAnnotation"/> - - <rdfs:comment rdf:datatype="&xsd;string"> - Generic annotation class. - </rdfs:comment> - - <!-- created by --> - <rdfs:subClassOf> - <owl:Restriction> <owl:onProperty rdf:resource="&pav;createdBy"/> <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> </owl:Restriction> - </rdfs:subClassOf> - - <!-- created on --> - <rdfs:subClassOf> - <owl:Restriction> <owl:onProperty rdf:resource="&pav;createdOn"/> <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> </owl:Restriction> - </rdfs:subClassOf> - - <!-- annotates --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="annotatesResource"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- selector --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="context"/> - <owl:someValuesFrom> - <owl:Class rdf:about="Selector"/> - </owl:someValuesFrom> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="context"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- has topic --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="hasTopic"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- body --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="body"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - </owl:Class> - - <owl:Class rdf:about="Selector" rdfs:label="(ao) Selector"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - <owl:disjointWith rdf:resource="Annotation"/> - <owl:disjointWith rdf:resource="AnnotationCuration"/> - <owl:disjointWith rdf:resource="AnnotationSet"/> - <owl:disjointWith rdf:resource="DocumentAnnotation"/> - - <rdfs:comment rdf:datatype="&xsd;string"> - Selectors identify document fragments. - </rdfs:comment> - </owl:Class> - - <owl:Class rdf:about="AnnotationCuration" rdfs:label="(ao) Annotation Curation"> - <rdfs:subClassOf rdf:resource="&pav;Curation"/> - <owl:disjointWith rdf:resource="Annotation"/> - <owl:disjointWith rdf:resource="Selector"/> - <owl:disjointWith rdf:resource="AnnotationSet"/> - <owl:disjointWith rdf:resource="DocumentAnnotation"/> - - <rdfs:comment rdf:datatype="&xsd;string"> - </rdfs:comment> - - <!-- created by --> - <rdfs:subClassOf> - <owl:Restriction> <owl:onProperty rdf:resource="&pav;createdBy"/> <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> </owl:Restriction> - </rdfs:subClassOf> - - <!-- created on --> - <rdfs:subClassOf> - <owl:Restriction> <owl:onProperty rdf:resource="&pav;createdOn"/> <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> </owl:Restriction> - </rdfs:subClassOf> - - <!-- curates (exactly one annotation) --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;curates"/> - <owl:allValuesFrom> - <owl:Class rdf:about="Annotation"/> - </owl:allValuesFrom> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;curates"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;curates"/> - <owl:maxCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:maxCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;curatedBy"/> - <owl:maxCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:maxCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- status --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="status"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - </owl:Class> - - <owl:Class rdf:about="AnnotationSet" rdfs:label="(ao) Annotation Set"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - <owl:disjointWith rdf:resource="Annotation"/> - <owl:disjointWith rdf:resource="Selector"/> - <owl:disjointWith rdf:resource="AnnotationCuration"/> - <owl:disjointWith rdf:resource="DocumentAnnotation"/> - - <rdfs:comment rdf:datatype="&xsd;string"> - </rdfs:comment> - - <!-- created by --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;createdBy"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- created on --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;createdOn"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- has topic --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="hasTopic"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- items --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="item"/> - <owl:allValuesFrom> - <owl:Class rdf:about="Annotation"/> - </owl:allValuesFrom> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="item"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- source document --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="onResource"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - </owl:Class> - - <owl:Class rdf:about="DocumentAnnotation" rdfs:label="(ao) Document Annotation"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - <owl:disjointWith rdf:resource="Annotation"/> - <owl:disjointWith rdf:resource="AnnotationCuration"/> - <owl:disjointWith rdf:resource="Selector"/> - <owl:disjointWith rdf:resource="AnnotationSet"/> - - <rdfs:comment rdf:datatype="&xsd;string"> - </rdfs:comment> - - <!-- created by --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;createdBy"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- created on --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="&pav;createdOn"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- has topic --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="hasTopic"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">0</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- items --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="item"/> - <owl:allValuesFrom> - <owl:Class rdf:about="AnnotationSet"/> - </owl:allValuesFrom> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="item"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - - <!-- source document --> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty rdf:resource="onResource"/> - <owl:minCardinality rdf:datatype="&xsd;nonNegativeInteger">1</owl:minCardinality> - </owl:Restriction> - </rdfs:subClassOf> - </owl:Class> - - <!-- - /////////////////////////////////////////////////////////////////////////////////////// - // - // Annotation Ontology Properties - // - /////////////////////////////////////////////////////////////////////////////////////// - --> - <owl:ObjectProperty rdf:about="onResource"> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="annotatesResource"> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="onSourceDocument"> - <rdfs:range rdf:resource="&pav;SourceDocument" /> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="hasTopic"> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="body"> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="item"> - </owl:ObjectProperty> - - <owl:ObjectProperty rdf:about="&pav;curates"> - <owl:inverseOf rdf:resource="&pav;curatedBy" /> - </owl:ObjectProperty> - - <owl:DatatypeProperty rdf:about="status"> - </owl:DatatypeProperty> - - <owl:ObjectProperty rdf:about="context"> - <rdfs:domain rdf:resource="Annotation" /> - <rdfs:range rdf:resource="Selector" /> - </owl:ObjectProperty> - - <!-- - /////////////////////////////////////////////////////////////////////////////////////// - // - // Integration - // - /////////////////////////////////////////////////////////////////////////////////////// - --> - <rdf:Description rdf:about="&pav;Curation" rdfs:label="(pav) Curation"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - </rdf:Description> - - <rdf:Description rdf:about="&pav;SourceDocument" rdfs:label="(pav) Source Document"> - <rdfs:subClassOf rdf:resource="&owl;Thing"/> - - <owl:disjointWith rdf:resource="Annotation"/> - <owl:disjointWith rdf:resource="AnnotationCuration"/> - <owl:disjointWith rdf:resource="Selector"/> - <owl:disjointWith rdf:resource="AnnotationSet"/> - </rdf:Description> - -</rdf:RDF> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation.owl ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation.owl b/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation.owl deleted file mode 100644 index 6cdadf8..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/annotation.owl +++ /dev/null @@ -1,89 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> - -<!-- Created by Paolo Ciccarese http://www.paolociccarese.info on April 12th, 2010 --> - -<!DOCTYPE rdf:RDF [ - <!-- Other namespaces --> - <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#"; > - <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#"; > - <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#"; > - <!ENTITY owl "http://www.w3.org/2002/07/owl#"; > - <!ENTITY dct "http://dublincore.org/documents/dcmi-terms/"; > - <!ENTITY ans "http://www.w3.org/2000/10/annotation-ns#"; > - <!ENTITY bkm "http://www.w3.org/2002/01/bookmark#"; > - <!ENTITY foaf "http://xmlns.com/foaf/0.1/";> - <!ENTITY pav "http://purl.org/pav/";> - - <!-- Main namespace --> - <!ENTITY annotation "http://purl.org/ao/"; > -]> - -<rdf:RDF - xml:base="&annotation;" - xmlns="&annotation;" - xmlns:pav="&pav;" - xmlns:rdfs="&rdfs;" - xmlns:owl="&owl;" - xmlns:rdf="&rdf;" - xmlns:xsd="&xsd;" - xmlns:dct="&dct;" - xmlns:foaf="&foaf;" - xmlns:ans="&ans;" - xmlns:bkm="&bkm;"> - - <owl:Ontology rdf:about="&annotation;"> - <rdf:type rdf:resource="&owl;Ontology"/> - <rdfs:label rdf:datatype="&xsd;string">Annotation Ontology v. 1.0</rdfs:label> - - <owl:imports rdf:resource="http://purl.org/ao/core/"/> - <owl:imports rdf:resource="http://purl.org/ao/annotea/"/> - <owl:imports rdf:resource="http://purl.org/ao/selectors/"/> - <owl:imports rdf:resource="http://purl.org/ao/types/"/> - <owl:imports rdf:resource="http://purl.org/ao/foaf/"/> - - <owl:imports rdf:resource="http://purl.org/pav/2.0/"/> - - <dct:language>en</dct:language> - <dct:title xml:lang="en">Annotation Ontology</dct:title> - <dct:creator rdf:resource="http://www.hcklab.org/foaf.rdf#me"/> - <dct:publisher rdf:resource="http://www.mindinformatics.org"/> - <dct:contributor rdf:datatype="&xsd;string">Paolo Ciccarese</dct:contributor> - <dct:created rdf:datatype="&xsd;string">April 12, 2010</dct:created> - <dct:date rdf:datatype="&xsd;string">May 26, 2010</dct:date> - <dct:format rdf:datatype="&xsd;string">rdf/xml</dct:format> - </owl:Ontology> - - <!-- - /////////////////////////////////////////////////////////////////////////////////////// - // - // Annotation Properties - // - /////////////////////////////////////////////////////////////////////////////////////// - --> - - <rdf:Description rdf:about="&dct;title"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;created"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;date"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;creator"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;format"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;language"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;publisher"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - <rdf:Description rdf:about="&dct;contributor"> - <rdf:type rdf:resource="&owl;AnnotationProperty"/> - </rdf:Description> - -</rdf:RDF> \ No newline at end of file http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/content.owl ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/content.owl b/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/content.owl deleted file mode 100644 index 79553e6..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/content.owl +++ /dev/null @@ -1,161 +0,0 @@ -<?xml version="1.0" encoding="utf-8"?> -<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; - xmlns:owl="http://www.w3.org/2002/07/owl#"; - xmlns:dct="http://purl.org/dc/terms/"; - xmlns:xsd="http://www.w3.org/2001/XMLSchema#"; - xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; - xmlns:cnt="http://www.w3.org/2011/content#"; - xmlns="http://www.w3.org/2011/content#"; - xml:base="http://www.w3.org/2011/content"; -> - - <owl:Ontology rdf:about=""> - <rdfs:label xml:lang="en">Representing Content in RDF</rdfs:label> - <rdfs:comment xml:lang="en">Representing Content in RDF as defined by http://www.w3.org/TR/Content-in-RDF/</rdfs:comment> - <owl:versionInfo xml:lang="en">Working Draft 29 April 2011</owl:versionInfo> - <rdfs:isDefinedBy rdf:resource="http://www.w3.org/TR/Content-in-RDF/"; /> - <rdfs:seeAlso rdf:resource="http://www.w3.org/WAI/intro/earl"; /> - <!--<owl:imports rdf:resource="http://purl.org/dc/terms/"; />--> - </owl:Ontology> - - <!-- Classes --> - - <rdfs:Class rdf:about="#Content"> - <rdfs:label xml:lang="en">Content</rdfs:label> - <rdfs:comment xml:lang="en">The content.</rdfs:comment> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"; /> - </rdfs:Class> - - <rdfs:Class rdf:ID="ContentAsBase64"> - <rdfs:label xml:lang="en">Base64 content</rdfs:label> - <rdfs:comment xml:lang="en">The base64 encoded content (can be used for binary content).</rdfs:comment> - <rdfs:subClassOf rdf:resource="#Content" /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"; /> - </rdfs:Class> - - <rdfs:Class rdf:ID="ContentAsText"> - <rdfs:label xml:lang="en">Text content</rdfs:label> - <rdfs:comment xml:lang="en">The text content (can be used for text content).</rdfs:comment> - <rdfs:subClassOf rdf:resource="#Content" /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"; /> - </rdfs:Class> - - <rdfs:Class rdf:ID="ContentAsXML"> - <rdfs:label xml:lang="en">XML content</rdfs:label> - <rdfs:comment xml:lang="en">The XML content (can only be used for XML-wellformed content).</rdfs:comment> - <rdfs:subClassOf rdf:resource="#Content" /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"; /> - </rdfs:Class> - - <rdfs:Class rdf:ID="DoctypeDecl"> - <rdfs:label xml:lang="en">Document type declaration</rdfs:label> - <rdfs:comment xml:lang="en">The document type declaration.</rdfs:comment> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#Class"; /> - </rdfs:Class> - - <!-- Properties --> - - <rdf:Property rdf:ID="bytes"> - <rdfs:label xml:lang="en">Base64 encoded byte sequence</rdfs:label> - <rdfs:comment xml:lang="en">The Base64 encoded byte sequence of the content.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsBase64" /> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#base64Binary"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="characterEncoding"> - <rdfs:domain rdf:resource="#Content" /> - <rdfs:label xml:lang="en">Character encoding</rdfs:label> - <rdfs:comment xml:lang="en">The character encoding used to create a character sequence from a byte sequence or vice versa.</rdfs:comment> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="chars"> - <rdfs:domain rdf:resource="#ContentAsText" /> - <rdfs:label xml:lang="en">Character sequence</rdfs:label> - <rdfs:comment xml:lang="en">The character sequence of the text content.</rdfs:comment> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="declaredEncoding"> - <rdfs:label xml:lang="en">XML character encoding</rdfs:label> - <rdfs:comment xml:lang="en">The character encoding declared in the XML declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="doctypeName"> - <rdfs:label xml:lang="en">Document type name</rdfs:label> - <rdfs:comment xml:lang="en">The document type name.</rdfs:comment> - <rdfs:domain rdf:resource="#DoctypeDecl" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="dtDecl"> - <rdfs:label xml:lang="en">Document type declaration</rdfs:label> - <rdfs:comment xml:lang="en">The document type declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="#DoctypeDecl" /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="internalSubset"> - <rdfs:label xml:lang="en">Internal DTD subset</rdfs:label> - <rdfs:comment xml:lang="en">The internal document type definition subset within the document type declarations.</rdfs:comment> - <rdfs:domain rdf:resource="#DoctypeDecl" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="leadingMisc"> - <rdfs:label xml:lang="en">XML leading misc</rdfs:label> - <rdfs:comment xml:lang="en">The XML content preceding the document type declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="publicId"> - <rdfs:label xml:lang="en">Public ID</rdfs:label> - <rdfs:comment xml:lang="en">The document type declarations's public identifier.</rdfs:comment> - <rdfs:domain rdf:resource="#DoctypeDecl" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="rest"> - <rdfs:label xml:lang="en">XML rest</rdfs:label> - <rdfs:comment xml:lang="en">The XML content following the document type declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#XMLLiteral"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="standalone"> - <rdfs:label xml:lang="en">XML standalone document declaration</rdfs:label> - <rdfs:comment xml:lang="en">The standalone declaration in the XML declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="systemId"> - <rdfs:label xml:lang="en">System ID</rdfs:label> - <rdfs:comment xml:lang="en">The document type declarations's system identifier (typed: xsd:anyURI)</rdfs:comment> - <rdfs:domain rdf:resource="#DoctypeDecl" /> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#anyURI"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> - - <rdf:Property rdf:ID="version"> - <rdfs:label xml:lang="en">XML version</rdfs:label> - <rdfs:comment xml:lang="en">The XML version declared in the XML declaration.</rdfs:comment> - <rdfs:domain rdf:resource="#ContentAsXML" /> - <rdfs:range rdf:resource="http://www.w3.org/2000/01/rdf-schema#Literal"; /> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"; /> - </rdf:Property> -</rdf:RDF> http://git-wip-us.apache.org/repos/asf/incubator-taverna-engine/blob/3ecb1291/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/dcam.owl ---------------------------------------------------------------------- diff --git a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/dcam.owl b/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/dcam.owl deleted file mode 100644 index a96ea8d..0000000 --- a/taverna-prov-owl-bindings/src/main/resources/org/purl/wf4ever/provtaverna/owl/dcam.owl +++ /dev/null @@ -1,28 +0,0 @@ -<?xml version="1.0" encoding="utf-8"?> -<rdf:RDF xmlns:dc="http://purl.org/dc/elements/1.1/"; xmlns:dcam="http://purl.org/dc/dcam/"; xmlns:dcmitype="http://purl.org/dc/dcmitype/"; xmlns:dcterms="http://purl.org/dc/terms/"; xmlns:owl="http://www.w3.org/2002/07/owl#"; xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; xmlns:skos="http://www.w3.org/2004/02/skos/core#"; xmlns:xsd="http://www.w3.org/2001/XMLSchema#"; xml:base="http://triplr.org/rdf/bloody-byte.net/rdf/dc_owl2dl/dcam.ttl";> - <!-- - <owl:Ontology rdf:about="http://purl.org/NET/dc_owl2dl/dcam";> - --> - <owl:Ontology rdf:about="http://purl.org/wf4ever/dcam";> - <owl:imports rdf:resource="http://www.w3.org/TR/skos-reference/skos-owl1-dl.rdf"/> - <rdfs:label xml:lang="en">DCMI Abstract Model</rdfs:label> - <rdfs:comment xml:lang="en">OWL 2 DL ontology for a few terms of the DCMI abstract model from the http://purl.org/dc/dcam/ namespace</rdfs:comment> - </owl:Ontology> - <owl:ObjectProperty rdf:about="http://purl.org/dc/dcam/memberOf";> - <skos:definition xml:lang="en-US">A relationship between a resource and a vocabulary encoding scheme which indicates that the resource is a member of a set.</skos:definition> - <rdfs:label xml:lang="en-US">Member Of</rdfs:label> - <rdfs:isDefinedBy rdf:resource="http://dublincore.org/documents/2007/06/04/abstract-model/"/> - <rdfs:range rdf:resource="http://purl.org/dc/dcam/VocabularyEncodingScheme"/> - </owl:ObjectProperty> - <owl:Class rdf:about="http://purl.org/dc/dcam/VocabularyEncodingScheme";> - <skos:definition xml:lang="en-US">An enumerated set of resources.</skos:definition> - <rdfs:label xml:lang="en-US">Vocabulary Encoding Scheme</rdfs:label> - <rdfs:isDefinedBy rdf:resource="http://dublincore.org/documents/2007/06/04/abstract-model/"/> - </owl:Class> -</rdf:RDF> -<!-- -Made by Triplr http://triplr.org by Dave Beckett, http://purl.org/net/dajobe/ -from http://bloody-byte.net/rdf/dc_owl2dl/dcam.ttl in format turtle to rdfxml-abbrev -using Redland 1.0.7 and Raptor 1.4.18 from http://librdf.org/ -This document is http://triplr.org/rdf/bloody-byte.net/rdf/dc_owl2dl/dcam.ttl --->
