Author: buildbot
Date: Mon Mar 9 13:37:19 2015
New Revision: 943015
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
Propchange: websites/staging/taverna/trunk/cgi-bin/
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websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
(added)
+++ websites/staging/taverna/trunk/content/documentation/scufl2/processors.html
Mon Mar 9 13:37:19 2015
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+ <h1>Scufl2-Processors</h1>
+ <div class="alert alert-info" role="alert"><p><span class="glyphicon
glyphicon-info-sign" aria-hidden="true"></span>
+
+Taverna is transitioning to the Apache Incubator.
+This webpage reflects material not yet released under Apache Incubator.
+Instead it shows <a class="alert-link"
href="http://www.taverna.org.uk/";>taverna2</a> material that is expected to
become part of the Apache Incubator project in the future.
+</div>
+
+
+ <div id="content"><p>The definition of a processor.</p>
+<ul>
+<li>Bundle path: <code>/workflow/\$workflowName.n3</code></li>
+</ul>
+<p>Processors should be described in the same file as their containing
+ <a href="/documentation/scufl2/workflow">workflow</a>.</p>
+<h2 id="identifier">Identifier</h2>
+<p>Each processor <strong>must</strong> have a <strong>scufl2:name</strong>,
which uniquely identifies this processor within its owning workflow.</p>
+<p>Processors are globally identified as
+
<code><http://ns.taverna.org.uk/2010/researchObject/$researchId/workflow/$workflowName/processor/$processorName/></code>
-
+ for instance<br />
+<code><http://ns.taverna.org.uk/2010/researchObject/28f7c554-4f35-401f-b34b-516e9a0ef731/workflow/Helloworld/processor/Hello/></code>.</p>
+<p>Within the workflow bundle the processors should be linked to relatively,
for instance <code><processor/Hello></code>
+ within a workflow file, or
<code><workflow/Helloworld/processor/Hello></code> within a profile
file.</p>
+<h2 id="example">Example</h2>
+<p>workflow/Helloworld.n3: (Outdated)</p>
+<div class="codehilite"><pre><span class="p">@</span><span
class="n">base</span> <span class="o">&</span><span
class="n">lt</span><span class="p">;</span><span class="n">workflow</span><span
class="o">/</span><span class="n">Helloworld</span><span
class="o">/&</span><span class="n">gt</span><span class="p">;</span>
+<span class="p">@</span><span class="n">prefix</span> <span
class="n">scufl2</span><span class="p">:</span> <span
class="o">&</span><span class="n">lt</span><span class="p">;</span><span
class="n">http</span><span class="p">:</span><span class="o">//</span><span
class="n">ns</span><span class="p">.</span><span class="n">taverna</span><span
class="p">.</span><span class="n">org</span><span class="p">.</span><span
class="n">uk</span><span class="o">/</span>2010<span class="o">/</span><span
class="n">scufl2</span><span class="o">/</span><span
class="n">ontology</span><span class="o">/&</span><span
class="n">gt</span><span class="p">;</span> <span class="p">.</span>
+
+<span class="o">&</span><span class="n">lt</span><span
class="p">;</span><span class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">&</span><span
class="n">gt</span><span class="p">;</span> <span class="n">a</span> <span
class="n">scufl2</span><span class="p">:</span><span class="n">Processor</span>
<span class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">name</span> <span class="o">&</span><span
class="n">quot</span><span class="p">;</span><span class="n">Hello</span><span
class="o">&</span><span class="n">quot</span><span class="p">;</span> <span
class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">inputProcessorPort</span> <span class="o">&</span><span
class="n">lt</span><span class="p">;</span><span
class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span><span class="n">in</span><span
class="o">/</span><span class="n">name</span><span class="o">&</span><span
class="n">gt</span><span class="p">;</span> <span class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">outputProcessorPort</span> <span class="o">&</span><span
class="n">lt</span><span class="p">;</span><span
class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span><span class="n">out</span><span
class="o">/</span><span class="n">greeting</span><span
class="o">&</span><span class="n">gt</span><span class="p">;</span> <span
class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">dispatchStack</span> <span class="o">&</span><span
class="n">lt</span><span class="p">;</span><span class="n">http</span><span
class="p">:</span><span class="o">//</span><span class="n">ns</span><span
class="p">.</span><span class="n">taverna</span><span class="p">.</span><span
class="n">org</span><span class="p">.</span><span class="n">uk</span><span
class="o">/</span>2010<span class="o">/</span><span
class="n">scufl2</span><span class="o">/</span><span
class="n">taverna</span>#<span class="n">defaultDispatchStack</span><span
class="o">&</span><span class="n">gt</span><span class="p">;</span> <span
class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">iterationStrategyStack</span> <span class="p">(</span><span
class="o">&</span><span class="n">lt</span><span class="p">;</span><span
class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span><span
class="n">iterationStrategy</span><span class="o">/</span>0<span
class="o">&</span><span class="n">gt</span><span class="p">;)</span> <span
class="p">.</span>
+
+<span class="o">&</span><span class="n">lt</span><span
class="p">;</span><span class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span><span class="n">in</span><span
class="o">/</span><span class="n">name</span><span class="o">&</span><span
class="n">gt</span><span class="p">;</span> <span class="n">a</span> <span
class="n">scufl2</span><span class="p">:</span><span
class="n">InputProcessorPort</span> <span class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">name</span> <span class="o">&</span><span
class="n">quot</span><span class="p">;</span><span class="n">name</span><span
class="o">&</span><span class="n">quot</span><span class="p">;;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">portDepth</span> 0 <span class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">granularPortDepth</span> 0 <span class="p">.</span>
+
+<span class="o">&</span><span class="n">lt</span><span
class="p">;</span><span class="n">processor</span><span class="o">/</span><span
class="n">Hello</span><span class="o">/</span><span class="n">out</span><span
class="o">/</span><span class="n">greeting</span><span
class="o">&</span><span class="n">gt</span><span class="p">;</span> <span
class="n">a</span> <span class="n">scufl2</span><span class="p">:</span><span
class="n">OutputProcessorPort</span> <span class="p">;</span>
+ <span class="n">scufl2</span><span class="p">:</span><span
class="n">name</span> <span class="o">&</span><span
class="n">quot</span><span class="p">;</span><span
class="n">greeting</span><span class="o">&</span><span
class="n">quot</span><span class="p">;</span> <span class="p">.</span>
+<span class="p">]]</span><span class="o">></span>
+</pre></div>
+
+
+<p>This example defines the processor "Hello" in the workflow "Helloworld".
+It contains one processor input port "name" and one processor output port
"greeting".
+Additionally the processor has a dispatch stack and an iteration strategy
stack.</p>
+<p>The nested resources for this workflow, such as InputProcessorPort,
OutputProcessorPort, DispatchStack,
+ IterationStrategyStack and their children <strong>should</strong> be
described in the same file as owning workflow itself.
+Additional metadata should be added to an <code>/annotations/</code> file.</p>
+<h2 id="properties">Properties</h2>
+<ul>
+<li><strong>scufl2:name</strong> (required) gives the programmatic short-name
for this processor within this particular workflow.
+ This must be unique among the other processors.</li>
+<li><strong>scufl2:inputProcessorPort</strong> (optional) All processor input
ports defined for this processor.</li>
+<li><strong>scufl2:outputProcessorPort</strong> (optional) All processor
output ports defined for this processor.</li>
+<li><strong>scufl2:dispatchStack</strong> (optional) The dispatch stack for
this processor.</li>
+<li><strong>scufl2:iterationStrategyStack</strong> (optional) The
IterationStrategyStack, required if more than 1 input is connected</li>
+</ul>
+<h2 id="bundle-linkswzxhzdk1">Bundle links</h2></h2>
+<p>All nested processor resources should also be defined in the same archive
file as this workflow.
+Their URIs <strong>must</strong> be relative to this processor, their type and
<strong>scufl2:name</strong>.
+So for instance <processor/Hello/out/greeting> is a
<strong>scufl2:OutputProcessorPort</strong> in <processor/Hello>,
+ and has a <strong>scufl2:name</strong> "greeting".</p></div>
+
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