svn commit: r991741 [21/37] - in /websites/staging/taverna/trunk: cgi-bin/ content/ content/javadoc/taverna-engine/ content/javadoc/taverna-engine/org/apache/taverna/activities/dataflow/ content/javadoc/taverna-engine/org/apache/taverna/activities/data...

Thu, 30 Jun 2016 08:29:38 -0700 

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceServiceResolutionCallback.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceServiceResolutionCallback.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceServiceResolutionCallback.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.ReferenceServiceResolutionCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.ReferenceServiceResolutionCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceServiceResolutionCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceServiceResolutionCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSet.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSet.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSet.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.ReferenceSet (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.ReferenceSet (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSet (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSet (Apache Taverna Engine and Platform 
3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentationException.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentationException.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentationException.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class 
org.apache.taverna.reference.ReferenceSetAugmentationException (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class 
org.apache.taverna.reference.ReferenceSetAugmentationException (Apache Taverna 
Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferenceSetAugmentationException (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferenceSetAugmentationException (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentor.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentor.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentor.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.ReferenceSetAugmentor 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.ReferenceSetAugmentor 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentor (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentor (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentorCallback.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentorCallback.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetAugmentorCallback.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentorCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentorCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentorCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetAugmentorCallback (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetDao.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetDao.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetDao.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:11 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.ReferenceSetDao (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.ReferenceSetDao (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetDao (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetDao (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetService.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetService.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetService.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:11 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.ReferenceSetService 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.ReferenceSetService 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetService (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetService (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceCallback.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceCallback.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceCallback.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.ReferenceSetServiceCallback (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.ReferenceSetServiceCallback (Apache Taverna Engine 
and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetServiceCallback (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ReferenceSetServiceCallback (Apache Taverna Engine 
and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceException.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceException.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferenceSetServiceException.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class org.apache.taverna.reference.ReferenceSetServiceException 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class org.apache.taverna.reference.ReferenceSetServiceException 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferenceSetServiceException (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferenceSetServiceException (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferencedDataNature.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferencedDataNature.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ReferencedDataNature.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:11 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class org.apache.taverna.reference.ReferencedDataNature (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class org.apache.taverna.reference.ReferencedDataNature (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferencedDataNature (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.ReferencedDataNature (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -124,15 +124,15 @@ filesystem</div>
 <tbody>
 <tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">AbstractExternalReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/AbstractExternalReference.html#getDataNature--">getDataNature</a></span>()</code>
-<div class="block">Default to returning DataReferenceNature.UNKNOWN</div>
+<td class="colLast"><span 
class="typeNameLabel">ExternalReferenceSPI.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ExternalReferenceSPI.html#getDataNature--">getDataNature</a></span>()</code>
+<div class="block">Determine, if possible, whether the data this reference 
refers to is
+ textual or binary in nature.</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">ExternalReferenceSPI.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ExternalReferenceSPI.html#getDataNature--">getDataNature</a></span>()</code>
-<div class="block">Determine, if possible, whether the data this reference 
refers to is
- textual or binary in nature.</div>
+<td class="colLast"><span 
class="typeNameLabel">AbstractExternalReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/AbstractExternalReference.html#getDataNature--">getDataNature</a></span>()</code>
+<div class="block">Default to returning DataReferenceNature.UNKNOWN</div>
 </td>
 </tr>
 <tr class="altColor">
@@ -226,20 +226,20 @@ the order they are declared.</div>
 </tr>
 <tbody>
 <tr class="altColor">
-<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">StreamToStringConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToStringConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
+<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/VMObjectReference.html"
 title="class in 
org.apache.taverna.reference.impl.external.object">VMObjectReference</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">StreamToVMObjectReferenceConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToVMObjectReferenceConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
           <a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a>&nbsp;dataNature,
           <a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in 
java.lang">String</a>&nbsp;charset)</code>&nbsp;</td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Boolean.html?is-external=true";
 title="class or interface in java.lang">Boolean</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">StreamToBooleanConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToBooleanConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
+<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">StreamToStringConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToStringConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
           <a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a>&nbsp;dataNature,
           <a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in 
java.lang">String</a>&nbsp;charset)</code>&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/VMObjectReference.html"
 title="class in 
org.apache.taverna.reference.impl.external.object">VMObjectReference</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">StreamToVMObjectReferenceConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToVMObjectReferenceConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
+<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Integer.html?is-external=true";
 title="class or interface in java.lang">Integer</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">StreamToIntegerConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToIntegerConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
           <a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a>&nbsp;dataNature,
           <a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in 
java.lang">String</a>&nbsp;charset)</code>&nbsp;</td>
 </tr>
@@ -256,8 +256,8 @@ the order they are declared.</div>
           <a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in 
java.lang">String</a>&nbsp;charset)</code>&nbsp;</td>
 </tr>
 <tr class="rowColor">
-<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Integer.html?is-external=true";
 title="class or interface in java.lang">Integer</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">StreamToIntegerConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToIntegerConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
 title="class or interface in java.io">InputStream</a>&nbsp;stream,
+<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Boolean.html?is-external=true";
 title="class or interface in java.lang">Boolean</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">StreamToBooleanConverter.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/StreamToBooleanConverter.html#renderFrom-java.io.InputStream-org.apache.taverna.reference.ReferencedDataNature-java.lang.String-">renderFrom</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/io/InputStream.html?is-external=true";
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           <a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a>&nbsp;dataNature,
           <a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in 
java.lang">String</a>&nbsp;charset)</code>&nbsp;</td>
 </tr>
@@ -277,25 +277,25 @@ the order they are declared.</div>
 <tbody>
 <tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">GreenReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/GreenReference.html#getDataNature--">getDataNature</a></span>()</code>
+<td class="colLast"><span 
class="typeNameLabel">RedReference.</span><code><span class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/RedReference.html#getDataNature--">getDataNature</a></span>()</code>
 <div class="block">Data nature set to 'ReferencedDataNature.TEXT'</div>
 </td>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">BlueReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/BlueReference.html#getDataNature--">getDataNature</a></span>()</code>
+<td class="colLast"><span 
class="typeNameLabel">YellowReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/YellowReference.html#getDataNature--">getDataNature</a></span>()</code>
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 <tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
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class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/YellowReference.html#getDataNature--">getDataNature</a></span>()</code>
+<td class="colLast"><span 
class="typeNameLabel">GreenReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/GreenReference.html#getDataNature--">getDataNature</a></span>()</code>
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 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferencedDataNature.html" 
title="enum in 
org.apache.taverna.reference">ReferencedDataNature</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">RedReference.</span><code><span class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/RedReference.html#getDataNature--">getDataNature</a></span>()</code>
+<td class="colLast"><span 
class="typeNameLabel">BlueReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/t2referencetest/BlueReference.html#getDataNature--">getDataNature</a></span>()</code>
 <div class="block">Data nature set to 'ReferencedDataNature.TEXT'</div>
 </td>
 </tr>

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StackTraceElementBean.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StackTraceElementBean.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StackTraceElementBean.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.StackTraceElementBean 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.StackTraceElementBean 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.StackTraceElementBean (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.StackTraceElementBean (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StreamToValueConverterSPI.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StreamToValueConverterSPI.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/StreamToValueConverterSPI.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.StreamToValueConverterSPI (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.StreamToValueConverterSPI (Apache Taverna Engine 
and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.StreamToValueConverterSPI (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.StreamToValueConverterSPI (Apache Taverna Engine 
and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2Reference.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2Reference.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2Reference.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.T2Reference (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.T2Reference (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.T2Reference (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.T2Reference (Apache Taverna Engine and Platform 
3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -523,7 +523,7 @@ specification.</div>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><span 
class="typeNameLabel">ErrorDocumentService.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ErrorDocumentService.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+<td class="colLast"><span 
class="typeNameLabel">ReferenceService.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ReferenceService.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
 </tr>
 <tr class="altColor">
 <td class="colFirst"><code>boolean</code></td>
@@ -531,7 +531,7 @@ specification.</div>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><span 
class="typeNameLabel">ReferenceService.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ReferenceService.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+<td class="colLast"><span 
class="typeNameLabel">ErrorDocumentService.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ErrorDocumentService.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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 <tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ReferenceSet.html" 
title="interface in org.apache.taverna.reference">ReferenceSet</a></code></td>
@@ -540,19 +540,19 @@ specification.</div>
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 <tr class="rowColor">
-<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/IdentifiedList.html" 
title="interface in org.apache.taverna.reference">IdentifiedList</a>&lt;<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
-<td class="colLast"><span class="typeNameLabel">ListDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ListDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>
-<div class="block">Retrieves a named and populated IdentifiedList of 
T2Reference from the
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-</td>
-</tr>
-<tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/Identified.html" 
title="interface in org.apache.taverna.reference">Identified</a></code></td>
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class="typeNameLabel">ReferenceServiceCacheProvider.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ReferenceServiceCacheProvider.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;id)</code>
 <div class="block">Called before an attempt is made to retrieve an item from 
the backing
  store</div>
 </td>
 </tr>
+<tr class="altColor">
+<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/IdentifiedList.html" 
title="interface in org.apache.taverna.reference">IdentifiedList</a>&lt;<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
+<td class="colLast"><span class="typeNameLabel">ListDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ListDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>
+<div class="block">Retrieves a named and populated IdentifiedList of 
T2Reference from the
+ database by T2Reference</div>
+</td>
+</tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ErrorDocument.html" 
title="interface in org.apache.taverna.reference">ErrorDocument</a></code></td>
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class="typeNameLabel">ErrorDocumentDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/ErrorDocumentDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>
@@ -835,36 +835,36 @@ specification.</div>
 <tbody>
 <tr class="altColor">
 <td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><span 
class="typeNameLabel">ReferenceServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ReferenceServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+<td class="colLast"><span 
class="typeNameLabel">ReferenceSetServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ReferenceSetServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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 <tr class="rowColor">
 <td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><span 
class="typeNameLabel">ListServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ListServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+<td class="colLast"><span 
class="typeNameLabel">ReferenceServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ReferenceServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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 <tr class="altColor">
 <td class="colFirst"><code>boolean</code></td>
-<td class="colLast"><span 
class="typeNameLabel">ReferenceSetServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ReferenceSetServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+<td class="colLast"><span 
class="typeNameLabel">ListServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ListServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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 <tr class="rowColor">
 <td class="colFirst"><code>boolean</code></td>
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class="typeNameLabel">ErrorDocumentServiceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/ErrorDocumentServiceImpl.html#delete-org.apache.taverna.reference.T2Reference-">delete</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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-<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ErrorDocument.html" 
title="interface in org.apache.taverna.reference">ErrorDocument</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">InMemoryErrorDocumentDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/InMemoryErrorDocumentDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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-<tr class="rowColor">
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href="../../../../../org/apache/taverna/reference/Identified.html" 
title="interface in org.apache.taverna.reference">Identified</a></code></td>
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class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/SimpleCacheProviderImpl.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;id)</code>&nbsp;</td>
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-<tr class="altColor">
+<tr class="rowColor">
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href="../../../../../org/apache/taverna/reference/ReferenceSet.html" 
title="interface in org.apache.taverna.reference">ReferenceSet</a></code></td>
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class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/InMemoryReferenceSetDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
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title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
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-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/IdentifiedList.html" 
title="interface in org.apache.taverna.reference">IdentifiedList</a>&lt;<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
 <td class="colLast"><span 
class="typeNameLabel">InMemoryListDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/InMemoryListDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
 </tr>
+<tr class="rowColor">
+<td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ErrorDocument.html" 
title="interface in org.apache.taverna.reference">ErrorDocument</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">InMemoryErrorDocumentDao.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/InMemoryErrorDocumentDao.html#get-org.apache.taverna.reference.T2Reference-">get</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;reference)</code>&nbsp;</td>
+</tr>
 <tr class="altColor">
 <td class="colFirst"><code>static <a 
href="../../../../../org/apache/taverna/reference/impl/T2ReferenceImpl.html" 
title="class in 
org.apache.taverna.reference.impl">T2ReferenceImpl</a></code></td>
 <td class="colLast"><span 
class="typeNameLabel">T2ReferenceImpl.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/T2ReferenceImpl.html#getAsImpl-org.apache.taverna.reference.T2Reference-">getAsImpl</a></span>(<a
 href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&nbsp;source)</code>&nbsp;</td>
@@ -1073,10 +1073,10 @@ specification.</div>
 </tr>
 <tbody>
 <tr class="altColor">
-<td class="colFirst"><code>abstract void</code></td>
-<td class="colLast"><span 
class="typeNameLabel">AbstractAsynchronousActivity.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/AbstractAsynchronousActivity.html#executeAsynch-java.util.Map-org.apache.taverna.workflowmodel.processor.activity.AsynchronousActivityCallback-">executeAsynch</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in org.apache.taverna.reference">T2Reference</a>&gt;&nbsp;data,
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span 
class="typeNameLabel">NonExecutableActivity.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/NonExecutableActivity.html#executeAsynch-java.util.Map-org.apache.taverna.workflowmodel.processor.activity.AsynchronousActivityCallback-">executeAsynch</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in org.apache.taverna.reference">T2Reference</a>&gt;&nbsp;data,
              <a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/AsynchronousActivityCallback.html"
 title="interface in 
org.apache.taverna.workflowmodel.processor.activity">AsynchronousActivityCallback</a>&nbsp;callback)</code>
-<div class="block">Request an asynchronous invocation of the activity on the 
specified data.</div>
+<div class="block">Attempting to run a NonExecutableActivity will always 
fail.</div>
 </td>
 </tr>
 <tr class="rowColor">
@@ -1087,10 +1087,10 @@ specification.</div>
 </td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code>void</code></td>
-<td class="colLast"><span 
class="typeNameLabel">NonExecutableActivity.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/NonExecutableActivity.html#executeAsynch-java.util.Map-org.apache.taverna.workflowmodel.processor.activity.AsynchronousActivityCallback-">executeAsynch</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in org.apache.taverna.reference">T2Reference</a>&gt;&nbsp;data,
+<td class="colFirst"><code>abstract void</code></td>
+<td class="colLast"><span 
class="typeNameLabel">AbstractAsynchronousActivity.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/AbstractAsynchronousActivity.html#executeAsynch-java.util.Map-org.apache.taverna.workflowmodel.processor.activity.AsynchronousActivityCallback-">executeAsynch</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in org.apache.taverna.reference">T2Reference</a>&gt;&nbsp;data,
              <a 
href="../../../../../org/apache/taverna/workflowmodel/processor/activity/AsynchronousActivityCallback.html"
 title="interface in 
org.apache.taverna.workflowmodel.processor.activity">AsynchronousActivityCallback</a>&nbsp;callback)</code>
-<div class="block">Attempting to run a NonExecutableActivity will always 
fail.</div>
+<div class="block">Request an asynchronous invocation of the activity on the 
specified data.</div>
 </td>
 </tr>
 <tr class="rowColor">
@@ -1147,6 +1147,13 @@ specification.</div>
 <tbody>
 <tr class="altColor">
 <td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
+<td class="colLast"><span 
class="typeNameLabel">DispatchResultEvent.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchResultEvent.html#getData--">getData</a></span>()</code>
+<div class="block">The result contains a map of named EntityIdentifier 
instances
+ corresponding to the result data.</div>
+</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
 <td class="colLast"><span 
class="typeNameLabel">DispatchJobEvent.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchJobEvent.html#getData--">getData</a></span>()</code>
 <div class="block">The actual data carried by this dispatch job event object 
is in the form
  of a map, where the keys of the map are Strings identifying the named
@@ -1155,13 +1162,6 @@ specification.</div>
  for further information on the DataManager system)</div>
 </td>
 </tr>
-<tr class="rowColor">
-<td class="colFirst"><code><a 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="../../../../../org/apache/taverna/reference/T2Reference.html" 
title="interface in 
org.apache.taverna.reference">T2Reference</a>&gt;</code></td>
-<td class="colLast"><span 
class="typeNameLabel">DispatchResultEvent.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/workflowmodel/processor/dispatch/events/DispatchResultEvent.html#getData--">getData</a></span>()</code>
-<div class="block">The result contains a map of named EntityIdentifier 
instances
- corresponding to the result data.</div>
-</td>
-</tr>
 </tbody>
 </table>
 <table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing constructors, and an explanation">

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceGenerator.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceGenerator.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceGenerator.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.T2ReferenceGenerator 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.T2ReferenceGenerator 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.T2ReferenceGenerator (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.T2ReferenceGenerator (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceType.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceType.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/T2ReferenceType.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:11 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class org.apache.taverna.reference.T2ReferenceType (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class org.apache.taverna.reference.T2ReferenceType (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.T2ReferenceType (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.T2ReferenceType (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueCarryingExternalReference.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueCarryingExternalReference.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueCarryingExternalReference.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.ValueCarryingExternalReference (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.ValueCarryingExternalReference (Apache Taverna 
Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ValueCarryingExternalReference (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ValueCarryingExternalReference (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConversionException.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConversionException.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConversionException.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class 
org.apache.taverna.reference.ValueToReferenceConversionException (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class 
org.apache.taverna.reference.ValueToReferenceConversionException (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.ValueToReferenceConversionException (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.ValueToReferenceConversionException (Apache 
Taverna Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -198,9 +198,9 @@ filesystem</div>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ExternalReferenceSPI.html" 
title="interface in 
org.apache.taverna.reference">ExternalReferenceSPI</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">ByteArrayToByteArrayReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/ByteArrayToByteArrayReference.html#convert-java.lang.Object-org.apache.taverna.reference.ReferenceContext-">convert</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true";
 title="class or interface in java.lang">Object</a>&nbsp;o,
+<td class="colLast"><span 
class="typeNameLabel">NumberToStringReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/NumberToStringReference.html#convert-java.lang.Object-org.apache.taverna.reference.ReferenceContext-">convert</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true";
 title="class or interface in java.lang">Object</a>&nbsp;o,
        <a 
href="../../../../../org/apache/taverna/reference/ReferenceContext.html" 
title="interface in 
org.apache.taverna.reference">ReferenceContext</a>&nbsp;context)</code>
-<div class="block">Return a new InlineByteArrayReference wrapping the supplied 
byte[]</div>
+<div class="block">Return a new InlineStringReference wrapping the supplied 
String</div>
 </td>
 </tr>
 <tr class="altColor">
@@ -212,9 +212,9 @@ filesystem</div>
 </tr>
 <tr class="rowColor">
 <td class="colFirst"><code><a 
href="../../../../../org/apache/taverna/reference/ExternalReferenceSPI.html" 
title="interface in 
org.apache.taverna.reference">ExternalReferenceSPI</a></code></td>
-<td class="colLast"><span 
class="typeNameLabel">NumberToStringReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/NumberToStringReference.html#convert-java.lang.Object-org.apache.taverna.reference.ReferenceContext-">convert</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true";
 title="class or interface in java.lang">Object</a>&nbsp;o,
+<td class="colLast"><span 
class="typeNameLabel">ByteArrayToByteArrayReference.</span><code><span 
class="memberNameLink"><a 
href="../../../../../org/apache/taverna/reference/impl/external/object/ByteArrayToByteArrayReference.html#convert-java.lang.Object-org.apache.taverna.reference.ReferenceContext-">convert</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true";
 title="class or interface in java.lang">Object</a>&nbsp;o,
        <a 
href="../../../../../org/apache/taverna/reference/ReferenceContext.html" 
title="interface in 
org.apache.taverna.reference">ReferenceContext</a>&nbsp;context)</code>
-<div class="block">Return a new InlineStringReference wrapping the supplied 
String</div>
+<div class="block">Return a new InlineByteArrayReference wrapping the supplied 
byte[]</div>
 </td>
 </tr>
 <tr class="altColor">

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConverterSPI.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConverterSPI.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/ValueToReferenceConverterSPI.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.ValueToReferenceConverterSPI (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.ValueToReferenceConverterSPI (Apache Taverna 
Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ValueToReferenceConverterSPI (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.ValueToReferenceConverterSPI (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/WorkflowRunIdEntity.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/WorkflowRunIdEntity.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/class-use/WorkflowRunIdEntity.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:11 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Class org.apache.taverna.reference.WorkflowRunIdEntity (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Class org.apache.taverna.reference.WorkflowRunIdEntity (Apache 
Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Class 
org.apache.taverna.reference.WorkflowRunIdEntity (Apache Taverna Engine and 
Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Class 
org.apache.taverna.reference.WorkflowRunIdEntity (Apache Taverna Engine and 
Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateComponentClass.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateComponentClass.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateComponentClass.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:55:58 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:47 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>HibernateComponentClass (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>HibernateComponentClass (Apache Taverna Engine and Platform 
3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="HibernateComponentClass (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="HibernateComponentClass (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -111,6 +111,10 @@
  <p>
  This should be used as an SPI marker, and set as the first SPI registry in
  the preloadRegistries property of the 
SpiRegistryAwareLocalSessionFactoryBean</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Tom Oinn</dd>
+</dl>
 </li>
 </ul>
 </div>

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateMappedEntity.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateMappedEntity.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/HibernateMappedEntity.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:55:58 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:47 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>HibernateMappedEntity (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>HibernateMappedEntity (Apache Taverna Engine and Platform 
3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="HibernateMappedEntity (Apache Taverna 
Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="HibernateMappedEntity (Apache Taverna 
Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -109,6 +109,10 @@
  <p>
  This should be used as an SPI marker, and set as the first SPI registry in
  the spiRegistries property of the 
SpiRegistryAwareLocalSessionFactoryBean</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Tom Oinn</dd>
+</dl>
 </li>
 </ul>
 </div>

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateComponentClass.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateComponentClass.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateComponentClass.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:51 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface 
org.apache.taverna.reference.h3.HibernateComponentClass (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface 
org.apache.taverna.reference.h3.HibernateComponentClass (Apache Taverna Engine 
and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.h3.HibernateComponentClass (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.h3.HibernateComponentClass (Apache Taverna Engine 
and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateMappedEntity.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateMappedEntity.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/class-use/HibernateMappedEntity.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:12 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:51 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Interface org.apache.taverna.reference.h3.HibernateMappedEntity 
(Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Interface org.apache.taverna.reference.h3.HibernateMappedEntity 
(Apache Taverna Engine and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Interface 
org.apache.taverna.reference.h3.HibernateMappedEntity (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Interface 
org.apache.taverna.reference.h3.HibernateMappedEntity (Apache Taverna Engine 
and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-frame.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-frame.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-frame.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:10 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-summary.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-summary.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-summary.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:10 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="org.apache.taverna.reference.h3 (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="org.apache.taverna.reference.h3 (Apache 
Taverna Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-tree.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-tree.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-tree.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:10 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:50 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>org.apache.taverna.reference.h3 Class Hierarchy (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>org.apache.taverna.reference.h3 Class Hierarchy (Apache Taverna Engine 
and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="org.apache.taverna.reference.h3 Class 
Hierarchy (Apache Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="org.apache.taverna.reference.h3 Class 
Hierarchy (Apache Taverna Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-use.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-use.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/h3/package-use.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:15 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:51 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>Uses of Package org.apache.taverna.reference.h3 (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>Uses of Package org.apache.taverna.reference.h3 (Apache Taverna Engine 
and Platform 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="Uses of Package 
org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="Uses of Package 
org.apache.taverna.reference.h3 (Apache Taverna Engine and Platform 
3.1.0-incubating API)";
         }
     }
     catch(err) {

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractEntityImpl.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractEntityImpl.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractEntityImpl.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:05 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:49 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>AbstractEntityImpl (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>AbstractEntityImpl (Apache Taverna Engine and Platform 3.1.0-incubating 
API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="AbstractEntityImpl (Apache Taverna Engine 
and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="AbstractEntityImpl (Apache Taverna Engine 
and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -119,6 +119,10 @@ extends <a href="http://docs.oracle.com/
 <div class="block">Abstract superclass of ReferenceSetImpl, 
IdentifiedArrayList and
  ErrorDocumentImpl, manages the T2Reference field for these types and their
  hibernate backing.</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Tom Oinn</dd>
+</dl>
 </li>
 </ul>
 </div>

Modified: 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractErrorDocumentServiceImpl.html
==============================================================================
--- 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractErrorDocumentServiceImpl.html
 (original)
+++ 
websites/staging/taverna/trunk/content/javadoc/taverna-engine/org/apache/taverna/reference/impl/AbstractErrorDocumentServiceImpl.html
 Thu Jun 30 15:28:47 2016
@@ -2,10 +2,10 @@
 <!-- NewPage -->
 <html lang="en">
 <head>
-<!-- Generated by javadoc (1.8.0_72-internal) on Mon Mar 14 13:56:05 GMT 2016 
-->
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 15:53:49 BST 2016 -->
 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-<title>AbstractErrorDocumentServiceImpl (Apache Taverna Engine and Platform 
3.1.0-incubating-SNAPSHOT API)</title>
-<meta name="date" content="2016-03-14">
+<title>AbstractErrorDocumentServiceImpl (Apache Taverna Engine and Platform 
3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
 <link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
 <script type="text/javascript" src="../../../../../script.js"></script>
 </head>
@@ -13,7 +13,7 @@
 <script type="text/javascript"><!--
     try {
         if (location.href.indexOf('is-external=true') == -1) {
-            parent.document.title="AbstractErrorDocumentServiceImpl (Apache 
Taverna Engine and Platform 3.1.0-incubating-SNAPSHOT API)";
+            parent.document.title="AbstractErrorDocumentServiceImpl (Apache 
Taverna Engine and Platform 3.1.0-incubating API)";
         }
     }
     catch(err) {
@@ -130,6 +130,10 @@ implements <a href="../../../../../org/a
  ErrorDocumentDao and T2ReferenceGenerator to enable. Contains injectors for
  id generation and dao along with other bookkeeping, leaving the
  implementation of the actual service logic to the subclass.</div>
+<dl>
+<dt><span class="simpleTagLabel">Author:</span></dt>
+<dd>Tom Oinn</dd>
+</dl>
 </li>
 </ul>
 </div>

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