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+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li><a href="package-summary.html">Package</a></li>
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 target="_top">Frames</a></li>
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Added: 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/class-use/CommandLineOptions.html
URL: 
http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/class-use/CommandLineOptions.html?rev=1750821&view=auto
==============================================================================
--- 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/class-use/CommandLineOptions.html
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+++ 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/class-use/CommandLineOptions.html
 Thu Jun 30 15:58:50 2016
@@ -0,0 +1,233 @@
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"http://www.w3.org/TR/html4/loose.dtd";>
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+<head>
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 16:50:23 BST 2016 -->
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<title>Uses of Interface 
org.apache.taverna.commandline.options.CommandLineOptions (Apache Taverna 
Command-line Tool 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
+<link rel="stylesheet" type="text/css" href="../../../../../../stylesheet.css" 
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+<body>
+<script type="text/javascript"><!--
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+            parent.document.title="Uses of Interface 
org.apache.taverna.commandline.options.CommandLineOptions (Apache Taverna 
Command-line Tool 3.1.0-incubating API)";
+        }
+    }
+    catch(err) {
+    }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../../../overview-summary.html">Overview</a></li>
+<li><a href="../package-summary.html">Package</a></li>
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 target="_top">Frames</a></li>
+<li><a href="CommandLineOptions.html" target="_top">No&nbsp;Frames</a></li>
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+<!-- ========= END OF TOP NAVBAR ========= -->
+<div class="header">
+<h2 title="Uses of Interface 
org.apache.taverna.commandline.options.CommandLineOptions" class="title">Uses 
of Interface<br>org.apache.taverna.commandline.options.CommandLineOptions</h2>
+</div>
+<div class="classUseContainer">
+<ul class="blockList">
+<li class="blockList">
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing packages, and an explanation">
+<caption><span>Packages that use <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Package</th>
+<th class="colLast" scope="col">Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><a 
href="#org.apache.taverna.commandline">org.apache.taverna.commandline</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><a 
href="#org.apache.taverna.commandline.data">org.apache.taverna.commandline.data</a></td>
+<td class="colLast">&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList">
+<ul class="blockList">
+<li class="blockList"><a name="org.apache.taverna.commandline">
+<!--   -->
+</a>
+<h3>Uses of <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a> in <a 
href="../../../../../../org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing classes, and an explanation">
+<caption><span>Classes in <a 
href="../../../../../../org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a>
 that implement <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Class and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>class&nbsp;</code></td>
+<td class="colLast"><code><span class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html"
 title="class in 
org.apache.taverna.commandline">CommandLineOptionsImpl</a></span></code>
+<div class="block">Handles the processing of command line arguments for 
enacting a workflow.</div>
+</td>
+</tr>
+</tbody>
+</table>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a 
href="../../../../../../org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a>
 with parameters of type <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span 
class="typeNameLabel">CommandLineTool.</span><code><span 
class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/CommandLineTool.html#setCommandLineOptions-org.apache.taverna.commandline.options.CommandLineOptions-">setCommandLineOptions</a></span>(<a
 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a>&nbsp;commandLineOptions)</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a 
href="../../../../../../org/apache/taverna/commandline/package-summary.html">org.apache.taverna.commandline</a>
 with parameters of type <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html#CommandLineMasterPasswordProvider-org.apache.taverna.commandline.options.CommandLineOptions-">CommandLineMasterPasswordProvider</a></span>(<a
 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a>&nbsp;commandLineOptions)</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+<li class="blockList"><a name="org.apache.taverna.commandline.data">
+<!--   -->
+</a>
+<h3>Uses of <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a> in <a 
href="../../../../../../org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a></h3>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing methods, and an explanation">
+<caption><span>Methods in <a 
href="../../../../../../org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a>
 with parameters of type <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colFirst" scope="col">Modifier and Type</th>
+<th class="colLast" scope="col">Method and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colFirst"><code>void</code></td>
+<td class="colLast"><span 
class="typeNameLabel">InputsHandler.</span><code><span 
class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/data/InputsHandler.html#checkProvidedInputs-java.util.Map-org.apache.taverna.commandline.options.CommandLineOptions-">checkProvidedInputs</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/port/InputWorkflowPort.html?is-external=true";
 title="class or interface in 
org.apache.taverna.scufl2.api.port">InputWorkflowPort</a>&gt;&nbsp;portMap,
+                   <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a>&nbsp;options)</code>&nbsp;</td>
+</tr>
+<tr class="rowColor">
+<td class="colFirst"><code><a 
href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/robundle/Bundle.html?is-external=true";
 title="class or interface in 
org.apache.taverna.robundle">Bundle</a></code></td>
+<td class="colLast"><span 
class="typeNameLabel">InputsHandler.</span><code><span 
class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/data/InputsHandler.html#registerInputs-java.util.Map-org.apache.taverna.commandline.options.CommandLineOptions-">registerInputs</a></span>(<a
 
href="http://docs.oracle.com/javase/7/docs/api/java/util/Map.html?is-external=true";
 title="class or interface in java.util">Map</a>&lt;<a 
href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true";
 title="class or interface in java.lang">String</a>,<a 
href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/port/InputWorkflowPort.html?is-external=true";
 title="class or interface in 
org.apache.taverna.scufl2.api.port">InputWorkflowPort</a>&gt;&nbsp;portMap,
+              <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a>&nbsp;options)</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+<table class="useSummary" border="0" cellpadding="3" cellspacing="0" 
summary="Use table, listing constructors, and an explanation">
+<caption><span>Constructors in <a 
href="../../../../../../org/apache/taverna/commandline/data/package-summary.html">org.apache.taverna.commandline.data</a>
 with parameters of type <a 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a></span><span 
class="tabEnd">&nbsp;</span></caption>
+<tr>
+<th class="colOne" scope="col">Constructor and Description</th>
+</tr>
+<tbody>
+<tr class="altColor">
+<td class="colLast"><code><span class="memberNameLink"><a 
href="../../../../../../org/apache/taverna/commandline/data/DatabaseConfigurationHandler.html#DatabaseConfigurationHandler-org.apache.taverna.commandline.options.CommandLineOptions-org.apache.taverna.configuration.database.DatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseManager-">DatabaseConfigurationHandler</a></span>(<a
 
href="../../../../../../org/apache/taverna/commandline/options/CommandLineOptions.html"
 title="interface in 
org.apache.taverna.commandline.options">CommandLineOptions</a>&nbsp;options,
+                            <a 
href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseConfiguration.html?is-external=true";
 title="class or interface in 
org.apache.taverna.configuration.database">DatabaseConfiguration</a>&nbsp;databaseConfiguration,
+                            <a 
href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseManager.html?is-external=true";
 title="class or interface in 
org.apache.taverna.configuration.database">DatabaseManager</a>&nbsp;databaseManager)</code>&nbsp;</td>
+</tr>
+</tbody>
+</table>
+</li>
+</ul>
+</li>
+</ul>
+</div>
+<!-- ======= START OF BOTTOM NAVBAR ====== -->
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href="http://www.apache.org/";>The Apache Software Foundation</a>. All rights 
reserved.</small></p>
+</body>
+</html>

Added: 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-frame.html
URL: 
http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-frame.html?rev=1750821&view=auto
==============================================================================
--- 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-frame.html
 (added)
+++ 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-frame.html
 Thu Jun 30 15:58:50 2016
@@ -0,0 +1,21 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" 
"http://www.w3.org/TR/html4/loose.dtd";>
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 16:50:23 BST 2016 -->
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<title>org.apache.taverna.commandline.options (Apache Taverna Command-line 
Tool 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<h1 class="bar"><a 
href="../../../../../org/apache/taverna/commandline/options/package-summary.html"
 target="classFrame">org.apache.taverna.commandline.options</a></h1>
+<div class="indexContainer">
+<h2 title="Interfaces">Interfaces</h2>
+<ul title="Interfaces">
+<li><a href="CommandLineOptions.html" title="interface in 
org.apache.taverna.commandline.options" target="classFrame"><span 
class="interfaceName">CommandLineOptions</span></a></li>
+</ul>
+</div>
+</body>
+</html>

Added: 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-summary.html
URL: 
http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-summary.html?rev=1750821&view=auto
==============================================================================
--- 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-summary.html
 (added)
+++ 
incubator/taverna/site/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/options/package-summary.html
 Thu Jun 30 15:58:50 2016
@@ -0,0 +1,144 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" 
"http://www.w3.org/TR/html4/loose.dtd";>
+<!-- NewPage -->
+<html lang="en">
+<head>
+<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 16:50:23 BST 2016 -->
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<title>org.apache.taverna.commandline.options (Apache Taverna Command-line 
Tool 3.1.0-incubating API)</title>
+<meta name="date" content="2016-06-30">
+<link rel="stylesheet" type="text/css" href="../../../../../stylesheet.css" 
title="Style">
+<script type="text/javascript" src="../../../../../script.js"></script>
+</head>
+<body>
+<script type="text/javascript"><!--
+    try {
+        if (location.href.indexOf('is-external=true') == -1) {
+            parent.document.title="org.apache.taverna.commandline.options 
(Apache Taverna Command-line Tool 3.1.0-incubating API)";
+        }
+    }
+    catch(err) {
+    }
+//-->
+</script>
+<noscript>
+<div>JavaScript is disabled on your browser.</div>
+</noscript>
+<!-- ========= START OF TOP NAVBAR ======= -->
+<div class="topNav"><a name="navbar.top">
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+<ul class="navList" title="Navigation">
+<li><a href="../../../../../overview-summary.html">Overview</a></li>
+<li class="navBarCell1Rev">Package</li>
+<li>Class</li>
+<li><a href="package-use.html">Use</a></li>
+<li><a href="package-tree.html">Tree</a></li>
+<li><a href="../../../../../deprecated-list.html">Deprecated</a></li>
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+<li><a href="../../../../../help-doc.html">Help</a></li>
+</ul>
+</div>
+<div class="subNav">
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