Jonathan mercier created HADOOP-17708: -----------------------------------------
Summary: Fail to build hadoop-common from source on Fedora
Key: HADOOP-17708
URL: https://issues.apache.org/jira/browse/HADOOP-17708
Project: Hadoop Common
Issue Type: Bug
Reporter: Jonathan mercier
Dear I tried to build hadoop from source with a vanilla fedora 34
{code:bash}
dnf group install -y "Development Tools" \
&& dnf install -y java-1.8.0-openjdk-devel fuse-devel snappy-java snappy-devel
jansson-devel protobuf zlib-devel libzstd-devel \
maven-1:3.6.3 cmake gcc-c++ ant protobuf-compiler
protobuf-java slf4j
export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/
export MAVEN_OPTS="-Xms2048M -Xmx4096M"
export
PATH="/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/bin/:$PATH"
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
curl -LO
https://apache.mediamirrors.org/hadoop/common/hadoop-3.2.2/hadoop-3.2.2-src.tar.gz
tar xf hadoop-3.2.2-src.tar.gz && cd hadoop-3.2.2-src
mvn package -Pdist,native -Drequire.snappy=true -DskipTests -Dtar
{code}
But I have this error
{code:java}
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.runMake
(CompileMojo.java:229)
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.execute
(CompileMojo.java:98)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo
(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:210)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:156)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:148)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:81)
at
org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build
(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute
(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced
(Launcher.java:282)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch
(Launcher.java:225)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode
(Launcher.java:406)
at org.codehaus.plexus.classworlds.launcher.Launcher.main
(Launcher.java:347)
[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the
command
[ERROR] mvn <args> -rf :hadoop-common
{code}
If we take a look to cmake log
I have:
{code:c}
gmake[1]: *** [CMakeFiles/cmTC_82239.dir/build.make:106: cmTC_82239] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_82239/fast] Error 2
Source file was:
#include <pthread.h>
static void* test_func(void* data)
{
return data;
}
int main(void)
{
pthread_t thread;
pthread_create(&thread, NULL, test_func, NULL);
pthread_detach(thread);
pthread_cancel(thread);
pthread_join(thread, NULL);
pthread_atfork(NULL, NULL, NULL);
pthread_exit(NULL);
return 0;
}
Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir:
/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/gmake cmTC_2b9ff/fast && /usr/bin/gmake -f
CMakeFiles/cmTC_2b9ff.dir/build.make CMakeFiles/cmTC_2b9ff.dir/build
gmake[1]: Entering directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -c
/usr/share/cmake/Modules/CheckFunctionExists.c
Linking C executable cmTC_2b9ff
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2b9ff.dir/link.txt
--verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -o cmTC_2b9ff -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_2b9ff.dir/build.make:106: cmTC_2b9ff] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_2b9ff/fast] Error 2
{code}
and if I create the C code shown above and build with `-lpthread` that works
fine
So as I use cmake 3.19 it is not an old cmake bug
Thanks for your help
best regards
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