qian created HADOOP-18173:
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Summary: AWS S3 copyFromLocalOperation doesn't support single file
Key: HADOOP-18173
URL: https://issues.apache.org/jira/browse/HADOOP-18173
Project: Hadoop Common
Issue Type: Bug
Affects Versions: 3.3.2
Environment: Hadoop version 3.3.2
Spark version 3.4.0-SNAPSHOT
use minio:latest to mock S3 filesystem
Reporter: qian
Spark job uses aws s3 as fileSystem and calls
{code:java}
fs.copyFromLocalFile(delSrc, overwrite, src, dest)
delSrc = false
overwrite = true
src =
"/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar"
dest =
"s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar"{code}
Then throw a PathIOException, message is as follow
{code:java}
Exception in thread "main" org.apache.spark.SparkException: Uploading file
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
failed... at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277)
at
scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286)
at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
at
scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
at scala.collection.TraversableLike.map(TraversableLike.scala:286) at
scala.collection.TraversableLike.map$(TraversableLike.scala:279) at
scala.collection.AbstractTraversable.map(Traversable.scala:108) at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275)
at
org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187)
at scala.collection.immutable.List.foreach(List.scala:431) at
org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178)
at
org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86)
at
scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126)
at
scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122)
at scala.collection.immutable.List.foldLeft(List.scala:91) at
org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84)
at
org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242)
at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242)
at
org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214)
at
org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)
at
org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)
at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203) at
org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90) at
org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by:
org.apache.spark.SparkException: Error uploading file
spark-examples_2.12-3.4.0-SNAPSHOT.jar at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328)
... 30 moreCaused by: org.apache.hadoop.fs.PathIOException: `Cannot get
relative path for
URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar':
Input/output error at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365)
at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226)
at
org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920)
at
org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499)
at
org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356)
at
org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913)
at
org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352)
... 31 more {code}
I add some logs
{code:java}
22/03/25 09:33:24 INFO KubernetesUtils: Uploading file:
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
to dest:
s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar...22/03/25
09:33:24 INFO S3AFileSystem: Copying local file from
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
to
s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar22/03/25
09:33:24 INFO CopyFromLocalOperation: Copying local file from
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
to
s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar22/03/25
09:33:24 INFO CopyFromLocalOperation: execute#CopyFromLocalOperation,
sourceFile is
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar22/03/25
09:33:24 INFO CopyFromLocalOperation:
uploadSourceFromFS#CopyFromLocalOperation, localFile 1: path is
LocatedFileStatus{path=file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar;
isDirectory=false; length=1567474; replication=1; blocksize=33554432;
modification_time=1647874074000; access_time=1647874074000; owner=hengzhen.sq;
group=staff; permission=rw-r--r--; isSymlink=false; hasAcl=false;
isEncrypted=false; isErasureCoded=false}22/03/25 09:33:24 INFO
CopyFromLocalOperation: getFinalPath#CopyFromLocalOperation, src is
file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar,
source is
/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
{code}
It looks like copyFromLocalOperation doesn't support single file.
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