[
https://issues.apache.org/jira/browse/HADOOP-17708?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]
Jonathan mercier updated HADOOP-17708:
--------------------------------------
Description:
Dear I tried to build hadoop from source with a vanilla fedora 34
{code:bash}
dnf group install -y "Development Tools" \
&& dnf install -y java-1.8.0-openjdk-devel fuse-devel snappy-java snappy-devel
jansson-devel protobuf zlib-devel libzstd-devel \
maven-1:3.6.3 cmake gcc-c++ ant protobuf-compiler
protobuf-java slf4j
export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/
export MAVEN_OPTS="-Xms2048M -Xmx4096M"
export
PATH="/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/bin/:$PATH"
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
curl -LO
https://apache.mediamirrors.org/hadoop/common/hadoop-3.2.2/hadoop-3.2.2-src.tar.gz
tar xf hadoop-3.2.2-src.tar.gz && cd hadoop-3.2.2-src
mvn package -Pdist,native -Drequire.snappy=true -DskipTests -Dtar
{code}
But I have this error
{code:java}
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.runMake
(CompileMojo.java:229)
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.execute
(CompileMojo.java:98)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo
(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:210)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:156)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:148)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:81)
at
org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build
(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute
(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced
(Launcher.java:282)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch
(Launcher.java:225)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode
(Launcher.java:406)
at org.codehaus.plexus.classworlds.launcher.Launcher.main
(Launcher.java:347)
[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the
command
[ERROR] mvn <args> -rf :hadoop-common
{code}
If we take a look to cmake log
I have:
{code:c}
gmake[1]: *** [CMakeFiles/cmTC_82239.dir/build.make:106: cmTC_82239] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_82239/fast] Error 2
Source file was:
#include <pthread.h>
static void* test_func(void* data)
{
return data;
}
int main(void)
{
pthread_t thread;
pthread_create(&thread, NULL, test_func, NULL);
pthread_detach(thread);
pthread_cancel(thread);
pthread_join(thread, NULL);
pthread_atfork(NULL, NULL, NULL);
pthread_exit(NULL);
return 0;
}
Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir:
/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/gmake cmTC_2b9ff/fast && /usr/bin/gmake -f
CMakeFiles/cmTC_2b9ff.dir/build.make CMakeFiles/cmTC_2b9ff.dir/build
gmake[1]: Entering directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -c
/usr/share/cmake/Modules/CheckFunctionExists.c
Linking C executable cmTC_2b9ff
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2b9ff.dir/link.txt
--verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -o cmTC_2b9ff -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_2b9ff.dir/build.make:106: cmTC_2b9ff] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_2b9ff/fast] Error 2
{code}
and if I create the C code shown above and build with `-lpthread` that works
fine
So as I use cmake 3.19.7, is it an old cmake bug ?
Thanks for your help
best regards
was:
Dear I tried to build hadoop from source with a vanilla fedora 34
{code:bash}
dnf group install -y "Development Tools" \
&& dnf install -y java-1.8.0-openjdk-devel fuse-devel snappy-java snappy-devel
jansson-devel protobuf zlib-devel libzstd-devel \
maven-1:3.6.3 cmake gcc-c++ ant protobuf-compiler
protobuf-java slf4j
export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/
export MAVEN_OPTS="-Xms2048M -Xmx4096M"
export
PATH="/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/bin/:$PATH"
export CC=/usr/bin/gcc
export CXX=/usr/bin/g++
curl -LO
https://apache.mediamirrors.org/hadoop/common/hadoop-3.2.2/hadoop-3.2.2-src.tar.gz
tar xf hadoop-3.2.2-src.tar.gz && cd hadoop-3.2.2-src
mvn package -Pdist,native -Drequire.snappy=true -DskipTests -Dtar
{code}
But I have this error
{code:java}
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.runMake
(CompileMojo.java:229)
at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.execute
(CompileMojo.java:98)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo
(DefaultBuildPluginManager.java:137)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:210)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:156)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute
(MojoExecutor.java:148)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
(LifecycleModuleBuilder.java:81)
at
org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build
(SingleThreadedBuilder.java:56)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute
(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke
(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke
(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke (Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced
(Launcher.java:282)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch
(Launcher.java:225)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode
(Launcher.java:406)
at org.codehaus.plexus.classworlds.launcher.Launcher.main
(Launcher.java:347)
[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please
read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the
command
[ERROR] mvn <args> -rf :hadoop-common
{code}
If we take a look to cmake log
I have:
{code:c}
gmake[1]: *** [CMakeFiles/cmTC_82239.dir/build.make:106: cmTC_82239] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_82239/fast] Error 2
Source file was:
#include <pthread.h>
static void* test_func(void* data)
{
return data;
}
int main(void)
{
pthread_t thread;
pthread_create(&thread, NULL, test_func, NULL);
pthread_detach(thread);
pthread_cancel(thread);
pthread_join(thread, NULL);
pthread_atfork(NULL, NULL, NULL);
pthread_exit(NULL);
return 0;
}
Determining if the function pthread_create exists in the pthreads failed with
the following output:
Change Dir:
/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/gmake cmTC_2b9ff/fast && /usr/bin/gmake -f
CMakeFiles/cmTC_2b9ff.dir/build.make CMakeFiles/cmTC_2b9ff.dir/build
gmake[1]: Entering directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -c
/usr/share/cmake/Modules/CheckFunctionExists.c
Linking C executable cmTC_2b9ff
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2b9ff.dir/link.txt
--verbose=1
/usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic
CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -o cmTC_2b9ff -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_2b9ff.dir/build.make:106: cmTC_2b9ff] Error 1
gmake[1]: Leaving directory
'/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_2b9ff/fast] Error 2
{code}
and if I create the C code shown above and build with `-lpthread` that works
fine
So as I use cmake 3.6.3, is it an old cmake bug ?
Thanks for your help
best regards
> Fail to build hadoop-common from source on Fedora
> -------------------------------------------------
>
> Key: HADOOP-17708
> URL: https://issues.apache.org/jira/browse/HADOOP-17708
> Project: Hadoop Common
> Issue Type: Bug
> Reporter: Jonathan mercier
> Priority: Major
>
> Dear I tried to build hadoop from source with a vanilla fedora 34
> {code:bash}
> dnf group install -y "Development Tools" \
> && dnf install -y java-1.8.0-openjdk-devel fuse-devel snappy-java
> snappy-devel jansson-devel protobuf zlib-devel libzstd-devel \
> maven-1:3.6.3 cmake gcc-c++ ant protobuf-compiler
> protobuf-java slf4j
> export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/
> export MAVEN_OPTS="-Xms2048M -Xmx4096M"
> export
> PATH="/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.292.b10-0.fc34.x86_64/bin/:$PATH"
> export CC=/usr/bin/gcc
> export CXX=/usr/bin/g++
> curl -LO
> https://apache.mediamirrors.org/hadoop/common/hadoop-3.2.2/hadoop-3.2.2-src.tar.gz
> tar xf hadoop-3.2.2-src.tar.gz && cd hadoop-3.2.2-src
> mvn package -Pdist,native -Drequire.snappy=true -DskipTests -Dtar
> {code}
> But I have this error
> {code:java}
> at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.runMake
> (CompileMojo.java:229)
>
>
> at org.apache.hadoop.maven.plugin.cmakebuilder.CompileMojo.execute
> (CompileMojo.java:98)
>
>
> at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo
> (DefaultBuildPluginManager.java:137)
>
>
> at org.apache.maven.lifecycle.internal.MojoExecutor.execute
> (MojoExecutor.java:210)
>
>
> at org.apache.maven.lifecycle.internal.MojoExecutor.execute
> (MojoExecutor.java:156)
>
>
> at org.apache.maven.lifecycle.internal.MojoExecutor.execute
> (MojoExecutor.java:148)
>
>
> at
> org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
> (LifecycleModuleBuilder.java:117)
>
>
> at
> org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject
> (LifecycleModuleBuilder.java:81)
>
>
> at
> org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build
> (SingleThreadedBuilder.java:56)
>
>
> at org.apache.maven.lifecycle.internal.LifecycleStarter.execute
> (LifecycleStarter.java:128)
>
>
> at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305)
>
>
>
> at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192)
>
>
>
> at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105)
>
>
>
> at org.apache.maven.cli.MavenCli.execute (MavenCli.java:957)
>
>
>
> at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:289)
>
>
>
> at org.apache.maven.cli.MavenCli.main (MavenCli.java:193)
>
>
>
> at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
>
>
>
> at sun.reflect.NativeMethodAccessorImpl.invoke
> (NativeMethodAccessorImpl.java:62)
>
>
>
> at sun.reflect.DelegatingMethodAccessorImpl.invoke
> (DelegatingMethodAccessorImpl.java:43)
>
>
> at java.lang.reflect.Method.invoke (Method.java:498)
>
>
>
> at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced
> (Launcher.java:282)
>
>
> at org.codehaus.plexus.classworlds.launcher.Launcher.launch
> (Launcher.java:225)
>
>
> at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode
> (Launcher.java:406)
>
>
> at org.codehaus.plexus.classworlds.launcher.Launcher.main
> (Launcher.java:347)
>
>
> [ERROR]
>
>
>
> [ERROR]
>
>
>
> [ERROR] For more information about the errors and possible solutions, please
> read the following articles:
>
>
> [ERROR] [Help 1]
> http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
>
>
>
> [ERROR]
>
>
>
> [ERROR] After correcting the problems, you can resume the build with the
> command
>
>
> [ERROR] mvn <args> -rf :hadoop-common
>
> {code}
> If we take a look to cmake log
> I have:
> {code:c}
> gmake[1]: *** [CMakeFiles/cmTC_82239.dir/build.make:106: cmTC_82239] Error 1
>
>
>
> gmake[1]: Leaving directory
> '/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
>
>
>
> gmake: *** [Makefile:140: cmTC_82239/fast] Error 2
>
>
>
>
>
>
>
>
>
>
>
> Source file was:
>
>
>
> #include <pthread.h>
>
>
>
>
>
>
>
> static void* test_func(void* data)
>
>
>
> {
>
>
>
> return data;
>
>
>
> }
>
>
>
>
>
>
>
> int main(void)
>
>
>
> {
>
>
>
> pthread_t thread;
>
>
>
> pthread_create(&thread, NULL, test_func, NULL);
>
>
>
> pthread_detach(thread);
>
>
>
> pthread_cancel(thread);
>
>
>
> pthread_join(thread, NULL);
>
>
>
> pthread_atfork(NULL, NULL, NULL);
>
>
>
> pthread_exit(NULL);
>
>
>
>
>
>
>
> return 0;
>
>
>
> }
>
>
>
>
>
>
>
> Determining if the function pthread_create exists in the pthreads failed with
> the following output:
>
>
> Change Dir:
> /hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp
>
>
>
>
>
>
>
> Run Build Command(s):/usr/bin/gmake cmTC_2b9ff/fast && /usr/bin/gmake -f
> CMakeFiles/cmTC_2b9ff.dir/build.make CMakeFiles/cmTC_2b9ff.dir/build
>
>
> gmake[1]: Entering directory
> '/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
>
>
>
> Building C object CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o
>
>
>
> /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -o
> CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -c
> /usr/share/cmake/Modules/CheckFunctionExists.c
>
>
> Linking C executable cmTC_2b9ff
>
>
>
> /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2b9ff.dir/link.txt
> --verbose=1
>
>
> /usr/bin/cc -DCHECK_FUNCTION_EXISTS=pthread_create -rdynamic
> CMakeFiles/cmTC_2b9ff.dir/CheckFunctionExists.c.o -o cmTC_2b9ff -lpthreads
>
>
> /usr/bin/ld: cannot find -lpthreads
>
>
>
> collect2: error: ld returned 1 exit status
>
>
>
> gmake[1]: *** [CMakeFiles/cmTC_2b9ff.dir/build.make:106: cmTC_2b9ff] Error 1
>
>
>
> gmake[1]: Leaving directory
> '/hadoop-3.2.2-src/hadoop-common-project/hadoop-common/target/native/CMakeFiles/CMakeTmp'
>
>
>
> gmake: *** [Makefile:140: cmTC_2b9ff/fast] Error 2
> {code}
> and if I create the C code shown above and build with `-lpthread` that works
> fine
> So as I use cmake 3.19.7, is it an old cmake bug ?
> Thanks for your help
> best regards
--
This message was sent by Atlassian Jira
(v8.3.4#803005)
---------------------------------------------------------------------
To unsubscribe, e-mail: common-issues-unsubscr...@hadoop.apache.org
For additional commands, e-mail: common-issues-h...@hadoop.apache.org
