I'm not sure if this will be helpful, but...  There's another problem
with Wine and a memory access violation and a workaround for this
problem is to disable ptrace protection with

    echo 0 | sudo tee /proc/sys/kernel/yama/ptrace_scope

I noticed that running this command fixes the menu bar problem as well.
I'm running Precise.

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https://bugs.launchpad.net/bugs/138508

Title:
  gnome panels displayed running wine apps and full screen apps with
  desktop effects enabled.

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