To edit the backbone angle:
1.) use the button from the 'old' Model/Fit/Refine dialog
2.) add the following line to the last list in your coot_toolbuttons.py
file (in COOTDIR/share/coot/python; e.g. after ["Add alt conf",
"altconf()", "Add alternative conformation", "add-alt-conf.svg"],):
["Edit BB", "setup_backbone_torsion_edit(1)", "Edit Backbone Torsion
Angle", "flip-peptide.svg"],
N.B. will be an option in the next version...
3.) Edit (or if not there create) coot_toolbuttons.py in
$HOME/.coot-preferences/coot_toolbuttons.py and add:
coot_toolbar_button("Edit BB", "setup_backbone_torsion_edit(1)",
"flip-peptide.svg")
The last two points are general to add new functions to the toolbuttons
manager.
I may include a GUI to add a simple function in the next release if
requested.
Bernhard
***************************************************
Dr. Bernhard Lohkamp
now University of York, YSBL
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden
phone: (+46) 08-52487698
fax: (+46) 08-327626
email: [EMAIL PROTECTED]
----- Original Message -----
From: Jianghai Zhu <[EMAIL PROTECTED]>
Date: Friday, October 3, 2008 6:09 pm
Subject: Re: [COOT] where did add alt conf go?
To: COOT@JISCMAIL.AC.UK
> Where can I find the instructions to add/delete buttons onto the
> toolbar? I particularly need the "backbone torsion angle" recently.
>
> Could somebody share the information? Thanks.
>
> -- Jianghai
>
>
>
>
>
>
> On Aug 2, 2008, at 4:57 AM, Bernhard Lohkamp wrote:
>
> > As Paul already mentioned in this thread you can add you own
> buttons
> > to
> > the horizontal toolbar now (pre version with python and gtk2). I
> > made a
> > few pre-defined functions but more will be added in future and
> can be
> > customized. I recently added an Alt Conf button.
> >
> > Bernhard
> >
> >> Dear Paul --
> >>
> >> On 26 Jul 2008, at 14:57, Paul Emsley wrote:
> >>> I recently discovered that on a laptop with 100dpi fonts and a
> >> 800-
> >>> pixel height resolution (not uncommon), then the tool-bar is so
> >>> long that the GNOME panel obscures the status bar. Not good. I
> >>> suppose that the Right Thing is to make it runtime configurable.
> >>
> >> Just a quick thought (I'm sure you're only considering this, but
> >> well...): what about adding an option just like your "Tips" window?
> >>
> >> What I have in mind is to add a pop-up window when you click on the
> >>
> >> Model/Fit/Refine button that will ask you which option you'd like
> >> to
> >> have in your refinement bar. You might put the all list of
> >> functions,
> >> with pre-selected buttons for the most common ones. The user will
> >> then have the possibility to choose what (s)he want according to
> >> the
> >> most used functions &/or the size of the screen.
> >>
> >> Sorry for the post if you already implemented it or already planed
> >> to
> >> do it. Just a thought.
> >>
> >> Kind regards.
> >>
> >> -- Leo --
> >> ------------------------------------------------------------
> >> Chavas Leonard, Ph.D. @ home
> >> Research Associate
> >> ------------------------------------------------------------
> >> Faculty of Life Sciences
> >> The University of Manchester
> >> The Michael Smith Building
> >> Oxford Road
> >> Manchester Lancashire
> >> M13 9PT
> >> ------------------------------------------------------------
> >> Tel: +44(0)161-275-1586
> >> e-mail: [EMAIL PROTECTED]
> >> http://personalpages.manchester.ac.uk/staff/leonard.chavas/
> >
> >
> >
> > ***************************************************
> >
> > Dr. Bernhard Lohkamp
> > Div. Molecular Structural Biology
> > Dept. of Medical Biochemistry and Biophysics (MBB)
> > Karolinska Institutet
> > S-17177 Stockholm
> > Sweden
> >
> > phone: (+46) 08-52487698
> > fax: (+46) 08-327626
> > email: [EMAIL PROTECTED]
> >
>
