Dear Don There is a program around called dssp2pdb from James Stroud which
does this job.
hope it works for you
all the best
Martyn
On Feb 9 2009, Don Kerkow wrote:
Hi all,
After seeing the string on secondary struct. assignment and molecular
visualization, I was wondering if anyone knows if there is a way to
produce the HELIX and SHEET records (i.e. explicit secondary struct.
assignment) automatically without depositing to PDB. Obviously, I
realize I could write this header manually based on the assignments I
get from DSSP, but for a large structure I was hoping there is an
easier way. I need this header for making accurate cartoon figures
in Pymol, but I am not yet ready to deposit the structure if that is
the only way to acquire such a header automatically.
Any help is much appreciated!
Don Kerkow
--
Martyn F. Symmons (Ph.D.)
Oppenheimer Research Fellow
Department of Pathology
University of Cambridge
Phone: 01223 333740
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"Gun fhaillin 'san fhairge",
said of Griomasaigh boats.
