Re: [COOT] coot-0.6-pre1-1941 for intel OS X 10.4/10.5

[Phil Evans]

On 29 Mar 2009, at 04:42, William G. Scott wrote:

This I hope will address previous grievances:
http://tinyurl.com/coot1941

... except I get a load of errors I didn't have before :-(

and no splash screen or icons. The files all seem to be there. Any  
ideas?

Phil

Acquiring application resources from /usr/local/xtal/coot/share/coot/ 
cootrc
INFO:: splash_screen_pixmap_dir /usr/local/xtal/coot/share/coot/pixmaps

** (coot-real:9797): WARNING **: Error loading pixmap file: /usr/local/ 
xtal/coot/share/coot/pixmaps/coot-0.6-pre-1.xpm
INFO:: Colours file: /usr/local/xtal/coot/share/coot/colours.def loaded
There are 118 data in /usr/local/xtal/coot/share/coot/lib/data/ 
monomers/list/mon_lib_list.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/ALA.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/ASP.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/ASN.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
c/CYS.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GLN.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GLY.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GLU.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
p/PHE.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
h/HIS.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
i/ILE.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
l/LYS.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
l/LEU.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
m/MET.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
m/MSE.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
p/PRO.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/ARG.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
s/SER.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
t/THR.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
v/VAL.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
t/TRP.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
t/TYR.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
p/PO4.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
s/SO4.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GOL.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
e/ETH.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
c/CIT.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/AR.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
a/AD.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
c/CR.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
c/CD.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GR.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
g/GD.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
t/TD.cif
There are 2 data in /usr/local/xtal/coot/share/coot/lib/data/monomers/ 
u/UR.cif

** (coot-real:9797): WARNING **: Error loading pixmap file: /usr/local/ 
xtal/coot/share/coot/pixmaps/display-manager.png
Reading coordinate file: /usr/local/xtal/coot/share/coot/standard- 
residues.pdb
 PDB file /usr/local/xtal/coot/share/coot/standard-residues.pdb has  
been read.
Spacegroup: P 1
Cell: 40.631 109.18 93.243 90 90 90
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/add-alt-conf.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/add-peptide-1.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/add-water.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/anchor.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/aniso-atom.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/atom-at-pointer.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/auto-fit-rotamer.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/azerbaijan.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/azerbaijan2.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/calculate-ghosts.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/cell+symm.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/change-chain-id.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/chiral.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/connect-to-ccp4.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/connect-to-oca.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/connect-to-usf.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/connect-to-world.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/crosshairs.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/delete.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/density-fit.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/diff-map.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/display-manager.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/edit-backbone.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/edit-chi.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/env-distances.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/flip-peptide.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/generic-display-objects.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/geom.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/ghosts.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gln-asn-b-factors.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gln-asn-b-factorssvg.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/kleywegt.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/map.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/merge-molecules.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/mutate-auto-fit.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/mutate.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/peptide-omega.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/phenixed.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/pink-pointer.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/plane-distances.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/pointer-distances.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/probe-clash.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/radacina_handcuffs-small.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/refine-1.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/regularize-1.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/renumber-residues.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/reset-view-32.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/reset-view.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/residue-info.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rigid-body.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rotamers.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rtz.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/scroll-wheel.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/secondary-structure.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/sequence-view.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/side-chain-180.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/smiles.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/spin-view.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/stereo-view.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/stop.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/temperature.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/torsion-general.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/undo-1.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/unknown-blob.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/water-diff-map.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/water-drop.svg'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/add-alt-conf.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/add-peptide-1.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/aniso-atom.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/appointment-new.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/atom-at-pointer.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/auto-fit-rotamer.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/cell+symm.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/chiral.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/coot-favicon.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/coot-icon.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/coot-save-symm.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/coot-save.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/crosshairs.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/delete.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/diff-map.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/display-manager.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/edit-chi.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/env-distances.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/flip-peptide.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/ghosts.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gnome-run.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gtk-connect-16.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gtk-font.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gtk-open-16.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gtk-open-24.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/gtk-open.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/panel-screenshot.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/peptide-omega.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/pink-pointer.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/plane-distances.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/pointer-distances.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/ramachandran.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/refine.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/regularize.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/reset-view-32.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/reset-view.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/residue-info.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rigid-body.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rotamers.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/rtz.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/sequence-view.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/side-chain-180.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/smiles.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/spin-view.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/temperature.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/undo-1.png'
Error loading icon: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/coot/pixmaps/unknown-blob.png'

(coot-real:9797): Gtk-WARNING **: Error loading icon: Couldn't  
recognize the image file format for file '/usr/local/xtal/coot/share/ 
themes/Glossy_P/gtk-2.0/stock_zoom_fit_width.png'

(coot-real:9797): Gtk-WARNING **: Error loading icon: Couldn't  
recognize the image file format for file '/usr/local/xtal/coot/share/ 
themes/Glossy_P/gtk-2.0/stock_undo.png'

(coot-real:9797): Gtk-WARNING **: Error loading icon: Couldn't  
recognize the image file format for file '/usr/local/xtal/coot/share/ 
themes/Glossy_P/gtk-2.0/stock_redo.png'
initalize graphics molecules...done.
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
DEBUG:: stating pydirectory /usr/local/xtal/coot/share/coot/python
INFO:: loading coot.py from /usr/local/xtal/coot/share/coot/python/ 
coot.py
Running python script /usr/local/xtal/coot/share/coot/python/coot.py
INFO:: coot.py loaded
INFO:: coot_python initialized
INFO loading coot python modules
Running python script /usr/local/xtal/coot/share/coot/python/ 
coot_load_modules.py
/usr/local/xtal/coot/share/coot/python/shelx.py:580: SyntaxWarning:  
import * only allowed at module level
  def read_shelx_project(file_name):
Loading: coot_utils.py
Loading: filter.py
Loading: coot_lsq.py
Loading: shelx.py
Loading: get_ebi.py
Loading: local_code.py
Loading: hello.py
Good Morning Pre, Welcome to Coot.
(set-display-intro-string "Good Morning Pre, Welcome to Coot.")
Loading: mutate.py
Loading: refmac.py
Loading: libcheck.py
Loading: gap.py
Loading: fitting.py
Loading: raster3d.py
Loading: povray.py
Loading: remote_control.py
Loading: generic_objects.py
Loading: ncs.py
Loading: cns2coot.py
Loading: tips.py
Loading: americanisms.py
Loading: group_settings.py
Loading: brute_lsqman.py
Loading: coot_gui.py
Coot Python Scripting GUI code found and loaded.
Traceback (most recent call last):
  File "/usr/local/xtal/coot/share/coot/python/coot_load_modules.py",  
line 119, in <module>
    execfile(filename)
  File "/usr/local/xtal/coot/share/coot/python/coot_toolbuttons.py",  
line 59, in <module>
    register_coot_icons()
  File "/usr/local/xtal/coot/share/coot/python/coot_toolbuttons.py",  
line 50, in register_coot_icons
    pixbuf = gtk.gdk.pixbuf_new_from_file(filename)
GError: Couldn't recognize the image file format for file '/usr/local/ 
xtal/coot/share/coot/pixmaps/add-alt-conf.svg'
Loading: tips_gui.py
Loading: clear_backup.py
Loading: coot_toolbuttons.py
BL ERROR: couldn't load  coot_toolbuttons.py
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
Loading scheme files from /usr/local/xtal/coot/share/coot/scheme
Coot Scheme Scripting GUI code found and loaded.
(set-display-intro-string "Good morning Phil. Welcome to Coot")
(set-display-lists-for-maps    0)
DEBUG:: in safe_python_command_with_return() pValue is 0xcee96e0
DEBUG:: in safe_python_command_with_return() pValue is 0xcee96e0
DEBUG:: in safe_python_command_with_return() pValue is 0xcee96e0
DEBUG:: in safe_python_command_with_return() pValue is 0xcee96e0
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_ok.png'
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_cancel.png'
(use-graphics-interface-state)

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/shadow_in.png:  
Couldn't recognize the image file format for file '/usr/local/xtal/ 
coot/share/themes/Glossy_P/gtk-2.0/shadow_in.png'

sys:1: GtkWarning: gdk_pixbuf_get_width: assertion `GDK_IS_PIXBUF  
(pixbuf)' failed
sys:1: GtkWarning: gdk_pixbuf_get_height: assertion `GDK_IS_PIXBUF  
(pixbuf)' failed

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_in.png,
borders don't fit within the image
sys:1: GtkWarning: gdk_pixbuf_get_n_channels: assertion `GDK_IS_PIXBUF  
(pixbuf)' failed
sys:1: GtkWarning: gdk_pixbuf_get_pixels: assertion `GDK_IS_PIXBUF  
(pixbuf)' failed
sys:1: GtkWarning: gdk_pixbuf_get_rowstride: assertion `GDK_IS_PIXBUF  
(pixbuf)' failed

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
vertical_trough.png: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/vertical_trough.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
vertical_trough.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
scrollbar_vertical.png: Couldn't recognize the image file format for  
file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
scrollbar_vertical.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
scrollbar_vertical.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png: Couldn't recognize the image file format for  
file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png: Couldn't recognize the image file format for file '/ 
usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/button_round.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/hline.png:  
Couldn't recognize the image file format for file '/usr/local/xtal/ 
coot/share/themes/Glossy_P/gtk-2.0/hline.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/hline.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png: Couldn't recognize the image file format for file '/ 
usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/transparent.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png: Couldn't recognize the image file format for file '/usr/ 
local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi-light_2.png'


** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png: Couldn't recognize the image file format for  
file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
plain_background.png: Couldn't recognize the image file format for  
file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
plain_background.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
plain_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
vertical_handle.png: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/vertical_handle.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_out.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/hline.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/hline.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/hline.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png: Couldn't recognize the image file format for  
file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue_push.png: Couldn't recognize the image file format  
for file '/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue_push.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue_push.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
button_round_blue_push.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
transparent.png,
borders don't fit within the image
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_open.png'
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_add.png'
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_save.png'
sys:1: GtkWarning: Error loading icon: Couldn't recognize the image  
file format for file '/usr/local/xtal/coot/share/themes/Glossy_P/ 
gtk-2.0/stock_quit.png'

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Pixbuf theme: Cannot load pixmap  
file /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png: Couldn't recognize the image file format for file  
'/usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_background.png'


** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
shadow_etched_in.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/ 
menu_background.png,
borders don't fit within the image

** (coot-real:9797): WARNING **: Invalid borders specified for theme  
pixmap:
        /usr/local/xtal/coot/share/themes/Glossy_P/gtk-2.0/menu_hi- 
light_2.png,
borders don't fit within the image
(coot-checked-exit    0)
(clear-backups-maybe)
(stereo-mode-state)
State file 0-coot.state.scm written.
(save-state)
State file 0-coot-history.py written.
State file 0-coot-history.scm written.
load "filter.scm"
load "matrices.scm"
load "coot-utils.scm"
load "coot-gui.scm"
load "coot-lsq.scm"
load "shelx.scm"
load "get-ebi.scm"
load "local-code.scm"
load "hello.scm"
Good morning Phil Evans. Welcome to Coot.
load "mutate.scm"
load "refmac.scm"
load "brute-lsqman.scm"
load "libcheck.scm"
load "gap.scm"
load "fitting.scm"
load "raster3d.scm"
load "povray.scm"
load "remote-control.scm"
load "generic-objects.scm"
load "fascinating-things.scm"
load "ncs.scm"
load "cns2coot.scm"
load "clear-backup.scm"
load "tips.scm"
load "americanisms.scm"
load "group-settings.scm"
load "tips-gui.scm"
load "extensions.scm"
There are 0 old files  (0 bytes) (0.0Mb) in "coot-backup"
WARNING: (net http client): imported module (net http message)  
overrides core binding `version'

Some deprecated features have been used.  Set the environment
variable GUILE_WARN_DEPRECATED to "detailed" and rerun the
program to get more information.  Set it to "no" to suppress
this message.
¯