Hi I am using the latest build (1947 0.6 pre) of coot Coot lsq superpose does exactly what I want it to do i.e superpose all the atoms from one set of fragments to the ncs symmety other set of fragments.
Is it possible to have coot output to stdout the transfomation matrix like it does when it does a ssm match. SSM superpose fails on this case since the superposed entities are still poly-ALA . I have tried getting lsqkab from ccp4 to behave and do the same thing but its quite tedious to teach lsqkab which chains are related. I know coot-lsq does the right thing , Is it possible for it to spit out the transformation matrix for lsq as well . Thanks hari