I'm trying to understand the Extensions-> Dock sequence dialogue. How
does it work?
I've tried
Place helix here
Select Dock Sequence
choose Helix molecule
Load sequence from a file
click "Sequence closest fragment"
then I get
assign-sequence-from-file 2 "/Users/pre/Documents/Talks/
Crystallography/LMB-2009/MapFitting/Examples/amph2.seq")
iv: 0 seq.size: 1
debug pythoning and
MAEMGSKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSLLEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDSAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWEPTESQAGVLPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGTQEPGETAASEATSSSLPAVVVETFSATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ
apply the sequence info here
then cootaneer
ERROR:: the input contains an invalid chain and/or sequence
BL ERROR:: something went wrong assigning the sequence
What should I have done? (Coot 0.6-pre 1 1941, OSX)
Best wishes
Phil
