Hi all, I have been trying to get coot 0.6.1 to run on my RHEL 4 machines with no luck. (I have also tried using a RHEL 5 machine with similiar results)
This is an i386 RHEL 4 machine running the CentOS-4 i386 pre-built binary: It displays the splash screen then disappears & errors: Reading coordinate file: ./coot-Linux-i386-centos-4-gtk2/share/coot/standard-residues.pdb PDB file ./coot-Linux-i386-centos-4-gtk2/share/coot/standard-residues.pdb has been read. Spacegroup: P 1 Cell: 40.631 109.18 93.243 90 90 90 ./coot-Linux-i386-centos-4-gtk2/bin/coot: line 240: 5549 Segmentation fault $coot_real $@ coot-exe: "./coot-Linux-i386-centos-4-gtk2/bin/coot-real" coot-version: /Home/jpk/linux/tmp/coot-Linux-i386-centos-4-gtk2/bin/coot-real platform: /bin/uname core: "core.30788" /usr/bin/gdb And GDB gives me this: Using host libthread_db library "/lib64/tls/libthread_db.so.1". Core was generated by `./coot-Linux-i386-centos-4-gtk2/bin/coot-real'. Program terminated with signal 11, Segmentation fault. #0 0xf7408dfe in g_type_check_instance_cast () from /usr/lib/libgobject-2.0.so.0 #0 0xf7408dfe in g_type_check_instance_cast () from /usr/lib/libgobject-2.0.so.0 #1 0x08320f65 in create_window1 () at gtk2-interface.c:1911 #2 0x080ff836 in main (argc=1, argv=0xffffd3f4) at main.cc:278 I try to use the x86_64 RHEL 4 release on my x86_64 RHEL 4 machine & get this (after the splash screen appears & disappears): Reading coordinate file: ./coot-Linux-x86_64-rhel-4-gtk2/share/coot/standard-residues.pdb PDB file ./coot-Linux-x86_64-rhel-4-gtk2/share/coot/standard-residues.pdb has been read. Spacegroup: P 1 Cell: 40.631 109.18 93.243 90 90 90 ./coot-Linux-x86_64-rhel-4-gtk2/bin/coot: line 240: 1544 Segmentation fault $coot_real $@ coot-exe: "./coot-Linux-x86_64-rhel-4-gtk2/bin/coot-real" coot-version: /Local/homes/AnansiHome/jpk/linux/tmp/coot-Linux-x86_64-rhel-4-gtk2/bin/coot-real ./coot-Linux-x86_64-rhel-4-gtk2/bin/coot-real: /usr/lib64/libidn.so.11: no version information available (required by ./coot-Linux-x86_64-rhel-4-gtk2/lib/libcurl.so.4) platform: /bin/uname core: "core.30788" /usr/bin/gdb warning: core file may not match specified executable file. Cannot access memory at address 0xbfed5bc808c9e528 and GDB gives me this: Using host libthread_db library "/lib64/tls/libthread_db.so.1". Core was generated by `./coot-Linux-i386-centos-4-gtk2/bin/coot-real'. Program terminated with signal 11, Segmentation fault. #0 0x0000000000000000 in ?? () #0 0x0000000000000000 in ?? () Any ideas where to start? Thank you! Jonathan
